G89003


Basic Information

Item Value
gene id G89003
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34344635 ~ 34345989 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU111037
NNAAAGGCTTTGGTGCAGGTCAGGGAATGTCCTGGAAAAACTGACTGGGAATTTATGAGAGTACTATAACAGAGCTTTTGTTGCCTAAGGTCCTACAGTTTTCAGGTTGTAAGAGAAATAGAGTTgagttaaaacatttttctaaattccATGTAATTATAGGATTTTTCTATTGCCTGTTAACAGAAATGACTAACTGTGAAAAAATTCTCACAGTGGATTGTGGCTGCAAGCCATTGCTAGAGTTTCTATGTGACAATAAGTAACCAGGTGGAAAGCTACCCATGACTGTAACTCTAAGACCTTTTAAACCAGATTGTCACACCTCTTGCATAATAAGGAAGTAATTCGGCAACATACTTACAAAAAAGTATGCAACTGGATGCTtttatgtgttcatttaaatgtgCTGAAATTGGTGGAGCTGTAGATTACtcttacagaaattaaaataaaacctttggaTACTGTTCAAAGTTATCtcgcttttgtttttcctatttttttggtatgtaatttatatttagttCCAATCCTATAATGGGTGCTACATGTGATCCAAATGAATTTGTGTCAGAACTCTGACTGCATTATGAATGTAAAGTCCTGCACTTCATTGCATTAATGTGGTATTTCTCCTAGGTCATTTGCTGTATCTCTGTAGTAGAGTCTTCAAGCTGAAACACTCAAGTCAAATTCAGGTTCACACAAAGaTAATGACATACGACACATCAGCTACTGGAGTTGAAGCACATTGGTACCTTTTGCTGTCACCAGTTCCTTTATTTGTGGTTATCAATTAACCAAAT

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU111037 True 809 lncRNA 0.36 2 34344635 34345989

Neighbor

gene id symbol gene type direction distance location
AMCG00021863 LOC107751906 coding downstream 69924 34263815 ~ 34274711 (-)
AMCG00021865 NA coding downstream 84239 34251674 ~ 34260396 (-)
AMCG00021864 NA coding downstream 94988 34242865 ~ 34249647 (-)
AMCG00021860 LOC107748562 coding downstream 155109 34179592 ~ 34189526 (-)
AMCG00021861 NA coding downstream 329745 34006659 ~ 34014890 (-)
AMCG00021870 NA coding upstream 399714 34745703 ~ 34757627 (-)
AMCG00021878 grina coding upstream 420863 34766852 ~ 34784712 (-)
AMCG00021879 NA coding upstream 444279 34790268 ~ 34809602 (-)
AMCG00021877 vps28,LOC107696523,LOC107592928 coding upstream 465167 34811156 ~ 34820379 (-)
AMCG00021885 kif13a coding upstream 965300 35311289 ~ 35351633 (-)
G88991 NA non-coding downstream 58333 34284384 ~ 34286302 (-)
G88939 NA non-coding downstream 167154 34177047 ~ 34177481 (-)
G88918 NA non-coding downstream 363807 33976080 ~ 33980828 (-)
G88883 NA non-coding downstream 499183 33845114 ~ 33845452 (-)
G88873 NA non-coding downstream 583161 33761242 ~ 33761474 (-)
G89011 NA non-coding upstream 73771 34419760 ~ 34420279 (-)
G89130 NA non-coding upstream 733584 35079573 ~ 35081173 (-)
G89212 NA non-coding upstream 1024117 35370106 ~ 35370480 (-)
G89240 NA non-coding upstream 1059068 35405057 ~ 35405340 (-)
G89247 NA non-coding upstream 1108578 35454567 ~ 35455198 (-)
AMCG00021849 NA other downstream 2275171 32063385 ~ 32069464 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other downstream 3212450 31129583 ~ 31132185 (-)
AMCG00021820 NA other downstream 3456047 30877848 ~ 30888588 (-)
G88527 NA other downstream 3920023 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 4601827 29730077 ~ 29742808 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 999 34346988 ~ 34380295 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other upstream 32712 34378701 ~ 34388010 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other upstream 1029027 35375016 ~ 35395771 (-)
G89368 NA other upstream 1597763 35943752 ~ 35946984 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other upstream 2068890 36414879 ~ 36438350 (-)

Expression


Co-expression Network