G89272 (LOC101154678)


Basic Information

Item Value
gene id G89272
gene name LOC101154678
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35817366 ~ 35817621 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU111375
gtggcttccgtctggccactctaccatacaggcctgattggtggagtgctgcagagatggttgttcttctggaaggttctcctctctccacagagacacgctggagctctgtcagagtgaccatcggtttcttggtcacctccctgactaaggcccttctcccccgatcgctcagtttggccgggcggccagctctaggaagagtcctggtggttccaaacttcttccatttacggatgatggaggccactgtgct

Function

NR:

description
transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111375 True 256 lncRNA 0.56 1 35817366 35817621

Neighbor

gene id symbol gene type direction distance location
AMCG00021890 NA coding downstream 18259 35798190 ~ 35799107 (-)
AMCG00021888 NA coding downstream 76856 35727419 ~ 35740510 (-)
AMCG00021889 NA coding downstream 144843 35668304 ~ 35672523 (-)
AMCG00021885 kif13a coding downstream 465733 35311289 ~ 35351633 (-)
AMCG00021877 vps28,LOC107696523,LOC107592928 coding downstream 996987 34811156 ~ 34820379 (-)
AMCG00021887 trip13,LOC106596102,LOC106590995 coding upstream 110970 35928591 ~ 35950291 (-)
AMCG00021891 NA coding upstream 209659 36027280 ~ 36030435 (-)
AMCG00021892 plekhg4b,LOC107729807 coding upstream 237353 36054974 ~ 36058550 (-)
AMCG00021898 NA coding upstream 804910 36622531 ~ 36625236 (-)
AMCG00021902 LOC108435486,LOC106605067 coding upstream 1018807 36836428 ~ 36845633 (-)
G89264 NA non-coding downstream 105650 35711463 ~ 35711716 (-)
G89247 NA non-coding downstream 362168 35454567 ~ 35455198 (-)
G89240 NA non-coding downstream 412026 35405057 ~ 35405340 (-)
G89212 NA non-coding downstream 446886 35370106 ~ 35370480 (-)
G89130 NA non-coding downstream 736193 35079573 ~ 35081173 (-)
G89359 NA non-coding upstream 34415 35852036 ~ 35893714 (-)
G89373 NA non-coding upstream 149498 35967119 ~ 35985261 (-)
G89428 NA non-coding upstream 680573 36498194 ~ 36501828 (-)
G89431 NA non-coding upstream 693978 36511599 ~ 36511931 (-)
G89539 NA non-coding upstream 1440922 37258543 ~ 37258818 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other downstream 421595 35375016 ~ 35395771 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other downstream 1429356 34378701 ~ 34388010 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other downstream 1437071 34346988 ~ 34380295 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other downstream 1460459 34260004 ~ 34356907 (-)
AMCG00021849 NA other downstream 3747902 32063385 ~ 32069464 (-)
G89368 NA other upstream 126131 35943752 ~ 35946984 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other upstream 597258 36414879 ~ 36438350 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other upstream 706888 36524509 ~ 36537718 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other upstream 859485 36677106 ~ 36687642 (-)
G89598 NA other upstream 2443766 38261387 ~ 38283855 (-)

Expression


Co-expression Network