G89549


Basic Information

Item Value
gene id G89549
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 37466781 ~ 37467591 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU111717
CTCAGTGAATCATCctatattctaaaatggcctaaAACTTAGGGCCcgattaattaaatcaaaaatgttcacaagcTGCTAACAAGAAAAGTTGTGGGTGAGtctagagccctgcatttcagcctgAGCCTGACGGGGCCCCGACTTCTTTACACCCCTCAGGCTGGGCTTCAGGCCAATTTTCACTTCATAGTTCACACGCGGGCTGGGCATTGGGactgttttaggctcctcctcctgtttatattttggacattaattaattaattaaaagaaactatgagaatttgatgatggtaaaacaaacatagaaagatgTTATATAATCTATCACACTGACATGCGtgacacagtctgctcacgcatgcacacacacgcacacaggtttcccacggACAACACGAGAGCATGCTACCGTGCCTGTGCAGACTGGCTCGCACGGTGTTTAGTGTCCAGCGCAGCTGGAAGAGGACAGAAGAAAGCAGGACTGGACTGAGACCGTCCACTGTGGATGATGTGCTTTTTCTCCATGATGCTCTGTaagagactgttcttctggctcTAGCTatgttaagactaggaggcttgttttttgtttgattggactttattgtcattagtctaactgttggaaactattggaaatgagaatggccatgttctgtggtgacaccttgatttttgaggtaaTGTAAGATaacctgtgtgttttattgtatttgtttagatcGTACAGCCTGTTAGTTCATTTTTCCTCACTCCATTGCGAGCAGTAGAGCAGCCTggtcagcttgtcaaaaatgccttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111717 True 811 lncRNA 0.43 1 37466781 37467591

Neighbor

gene id symbol gene type direction distance location
AMCG00021906 sall3,LOC103388658,LOC102796582,LOC103369140 coding downstream 231940 37212616 ~ 37234841 (-)
AMCG00021905 NA coding downstream 295402 37091198 ~ 37171379 (-)
AMCG00021904 NA coding downstream 467141 36992851 ~ 36999640 (-)
AMCG00021903 atp9b coding downstream 491665 36944033 ~ 36975116 (-)
AMCG00021901 NA coding downstream 592571 36867843 ~ 36874210 (-)
AMCG00021907 galr1,LOC107373077,LOC102797365 coding upstream 490164 37957755 ~ 37958533 (-)
AMCG00021909 NA coding upstream 712489 38180080 ~ 38224604 (-)
AMCG00021908 NA coding upstream 770547 38238138 ~ 38245037 (-)
AMCG00021913 tshz1,LOC107592027,LOC107748691,LOC107696938,LOC107593600 coding upstream 1351820 38819411 ~ 38826295 (-)
AMCG00021921 NA coding upstream 1471016 38938607 ~ 38945501 (-)
G89539 NA non-coding downstream 207963 37258543 ~ 37258818 (-)
G89431 NA non-coding downstream 954850 36511599 ~ 36511931 (-)
G89428 NA non-coding downstream 964953 36498194 ~ 36501828 (-)
G89373 NA non-coding downstream 1481520 35967119 ~ 35985261 (-)
G89359 NA non-coding downstream 1573067 35852036 ~ 35893714 (-)
G89553 NA non-coding upstream 97383 37564974 ~ 37565215 (-)
G89559 NA non-coding upstream 146806 37614397 ~ 37614596 (-)
G89562 NA non-coding upstream 293226 37760817 ~ 37761021 (-)
G89565 NA non-coding upstream 350971 37818562 ~ 37818769 (-)
G89566 NA non-coding upstream 425203 37892794 ~ 37893012 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other downstream 779139 36677106 ~ 36687642 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other downstream 929063 36524509 ~ 36537718 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other downstream 1028431 36414879 ~ 36438350 (-)
G89368 NA other downstream 1519797 35943752 ~ 35946984 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other downstream 2071010 35375016 ~ 35395771 (-)
G89598 NA other upstream 793796 38261387 ~ 38283855 (-)
G89611 NA other upstream 927980 38395571 ~ 38397755 (-)
AMCG00021918 cndp2,LOC103371436,LOC104951856,LOC105892098,LOC106958632,LOC106588296,LOC102776275 other upstream 1788288 39255879 ~ 39276056 (-)
G89765 NA other upstream 2018242 39485833 ~ 39486288 (-)
AMCG00021924 eppk1,LOC106938278,LOC107592034 other upstream 2019306 39486897 ~ 39548802 (-)

Expression


Co-expression Network