XLOC_006254 (TMEM87B)


Basic Information

Item Value
gene id XLOC_006254
gene name TMEM87B
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 47710434 ~ 47727611 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012258
CATGATCGAGAAGGCTGTTTCTGTGCTGAATATCAGAACACCAACACCGTGGGATCAGCAACTCAGGGTCTGCTGATCTTCGCTGAGCTCGTCTCTGCTCTGAAAAGGACTTTGGCTCGTTTGCTCGTCATCATCGTCAGTCTGGGCTACGGCATTGTCAAACCTCGTCTAGGCACTGTCATGCACAGAGTGGTTGGTCTCGGTGTGCTTTACTTTGCATTCGCTGCCATTGAGGGCGTTCTGAGGATCACTGGGGCTAAAGACTCTGACCTGGCCCTGCTAGCCAACATTCCCCTGGCTCTGCTTGACTCCTCTCTGTGTTGGTGGATATCCTTTTGGGAAGCAGTTTTGGCACAAACCATTAAGACTCTAAAGCTCAGAAAAAACCCAGTGAAGTTGTCTTTGTACAGACACTTCACCAACACACTCATCTTCGCTGTTCTGGCTTCAATCATTTTCATGGTTTGGACAACAAAGAAGTTTCGTTTGGCACACTGTCAGGGGGACTGGATGGAGCTGTGGGTGGACGATGCTTTCTGGAGGTTCCTCTTCTCTATTATTCTGCTGGTCATCATGTTTCTGTGGAGGCCGTCTGCTAATAACCAAAGGCAATTGAGAGCAGCTAAAACAGAAACCAATGGAACAGTGAAGCCTCCACCAACTAATCCGGTCAGTGATAGTATGTGA

Function

symbol description
tmem87b Acts upstream of or within cardiac ventricle development. Is expressed in hindbrain; pharyngeal arch; rhombomere; and somite. Orthologous to human TMEM87B (transmembrane protein 87B).

GO:

id name namespace
GO:0003231 cardiac ventricle development biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-091110-3 Acts upstream of or within cardiac ventricle development. Is expressed in hindbrain; pharyngeal arch; rhombomere; and somite. Orthologous to human TMEM87B (transmembrane protein 87B).

Ensembl:

ensembl_id ENSDARG00000112581

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012258 True 687 mRNA 0.49 8 47710434 47727611

Neighbor

gene id symbol gene type direction distance location
XLOC_006253 mertka coding upstream 18724 47623916 ~ 47691710 (+)
XLOC_006252 lhcgr coding upstream 91587 47573405 ~ 47618847 (+)
XLOC_006249 NA coding upstream 256526 47189134 ~ 47453908 (+)
XLOC_006251 NA coding upstream 349158 47353962 ~ 47361276 (+)
XLOC_006250 NA coding upstream 481138 47227236 ~ 47229296 (+)
XLOC_006255 zmp:0000001006 coding downstream 82600 47810211 ~ 47816048 (+)
XLOC_006256 zc3h6 coding downstream 93913 47821524 ~ 47839365 (+)
XLOC_006257 AL772263.1 coding downstream 176457 47904068 ~ 47904182 (+)
XLOC_006258 CU986283.1 coding downstream 318501 48046112 ~ 48046228 (+)
XLOC_006259 NA coding downstream 335514 48063125 ~ 48064309 (+)
XLOC_006248 CR847786.1 non-coding upstream 660408 47049912 ~ 47050026 (+)
XLOC_006246 NA non-coding upstream 723252 46986747 ~ 46987182 (+)
XLOC_006262 NA non-coding downstream 825095 48552706 ~ 48556760 (+)
XLOC_006263 NA non-coding downstream 841376 48568987 ~ 48587410 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_00306160_00314770 NA coding CI01180000 null 306160 ~ 315744 (+)