XLOC_006255 (zmp:0000001006)


Basic Information

Item Value
gene id XLOC_006255
gene name zmp:0000001006
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 47810211 ~ 47816048 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012259
AGCTTTTGGATAAAGCAAAGCATACGCGGAAGGTGCCTGAACAAAATGCTGGCTTTTCTCTTGATTGTTTCTTTTCATGAAGTCATCCTTGGCGCAGACGAACATGCATTCCAGCAGTTCATTGAGTGTGCGTTTAACAGCCAAGGGCAAGTAGACCGCTCATGGAGATATGGGTATGATGGCAAAGACGTCATGCATGTGGATTTGGCGACTGAAACTGTGGTCGGGACCAGTGAACCTGGCAAACGTTTAGCAGAAGAACGAAAAAGCACAGAGTACATTAGGAGGAAAGAAGAAAAACTAAAGATTGTGTGCTCTGCTGTGAAAACGGTCTTCCTAAAGTCTAACAATACACTGTCCAGGGCAGCAAAACCAACAGTGCTTTTATTGTCTAATGGAGGTCAGGGTCAGGAATATCTCAAGTGTGTTGTGCGTGGCTTCTATCCAAATGTCATCCGAGTGCGTTGGACCCAAAAGGGAAAGCCAATCTTTTTCGGTGTGTCGACTACTGGAACACTTCCTCACACTGACGGCACGTTTCAGATGACCTCCTATCTCAGCCTCGGTAATATGACAGCCCATGGTGTTACCTGTGAGATTGAACACTTGAGCATTGATGGGAAACTGAGGAAAAACTATGGGGATAATCCATGGATTCTGTCACAAATCACAGTGGCAGTGGTTGCTTTTATTCTTGGATTTGTGTGCACAATTGCGGTAATATTTGTTTGGAAAAGGCACCaaacaacaaaatcacatgatgaTGAGACAAATGGCGCAAGTGACGAATCAGAAGCATCTTTATCTTTGAATGTAATGAATATTTCTCAGGAAACATAAAcaattcttctttttcttctgatTATGGGCACAAACAGACTTTATTTTTATAGATGTGTATTAAGATACACCTGATTTGTTTCTCAGTGAGCAATAAAATACTATTGTGATGCCTG

Function

symbol description
zmp:0000001006 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-1009 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000090839

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012259 True 956 mRNA 0.42 4 47810211 47816048

Neighbor

gene id symbol gene type direction distance location
XLOC_006254 TMEM87B coding upstream 82600 47710434 ~ 47727611 (+)
XLOC_006253 mertka coding upstream 118501 47623916 ~ 47691710 (+)
XLOC_006252 lhcgr coding upstream 191364 47573405 ~ 47618847 (+)
XLOC_006249 NA coding upstream 356303 47189134 ~ 47453908 (+)
XLOC_006256 zc3h6 coding downstream 5476 47821524 ~ 47839365 (+)
XLOC_006257 AL772263.1 coding downstream 88020 47904068 ~ 47904182 (+)
XLOC_006258 CU986283.1 coding downstream 230064 48046112 ~ 48046228 (+)
XLOC_006259 NA coding downstream 247077 48063125 ~ 48064309 (+)
XLOC_006260 msh6 coding downstream 542419 48358467 ~ 48381055 (+)
XLOC_006251 NA non-coding upstream 448935 47353962 ~ 47361276 (+)
XLOC_006250 NA non-coding upstream 580915 47227236 ~ 47229296 (+)
XLOC_006248 CR847786.1 non-coding upstream 760185 47049912 ~ 47050026 (+)
XLOC_006246 NA non-coding upstream 823029 46986747 ~ 46987182 (+)
XLOC_006262 NA non-coding downstream 736658 48552706 ~ 48556760 (+)
XLOC_006263 NA non-coding downstream 752939 48568987 ~ 48587410 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_00361420_00364335 NA coding CI01180000 null 361420 ~ 365126 (+)