XLOC_006256 (zc3h6)


Basic Information

Item Value
gene id XLOC_006256
gene name zc3h6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 47821524 ~ 47839365 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012260
ATGGCTTTTGTGAGCCTCTTCTCCAGTCCCCCAAGCCCCGCACTTGACAAAATCATGACAGACTGTGAGCTGACAGGGGAAGAAAGGGAGGATGGTGAATTGGAAGATGGAGAAATAGACGATGAAGGTATAAGCATAGAAGAAGTTAAGGAAACTAAAGAAGAGTCTGAAGAGTTCGATAAAGACAAAGAGAAGGGAAAAGAGAAGGAAAAAGATGAGAAGTCACACCGGCATTCCCGAAAACGACACAGGAAAATTAAAGAAAAGCACCGGTCAAAGAGAAAGCGGCGAGATCGGCAAAAGCATCACACCCCGTCCAGTGGCTCCAGCTCAGACAGCTACGACTCTGAACATGAGCGTCAAGACAGACGTAAGAGCAAGAAGAGCAAATTAGTGTATCGTGATCACGATGGAGATTTTGCACAGGTGAGTTCAGGGTCATGCACTAGATTTAAAATTGCATTATCACGTGGCAGAGGTCGTGGTGGTGTTGTTGGTAGAGGACGAGGAATGCTGAACAAAAATAAGAAACTAAAGGGCAAGAACTGGGGCAGAGGCCGTGGTCGAGGAGGAGAGCAAATGGGAGGAGATGGGGACTCTAAAGGCCCACCCATTTTCCAGAAAAAGCGTCCAATCATGAGTCAGGAATTCATTAATCAGCATACGGTTGAACACAATGGAAGACACATTTGCAAATATTTCCTCGAGGGTAGATGCATCAAAGGTGACCAGTGCAAGTTTGAACATGATAATGTTGTTCCAGAGAAGAAGAAAGAACTGTGCAAATTTTACGTCCAGGGATACTGTACCAAAGGAGATATTTGTATATACATTTTACGCGAGTATCCTTGCAAGTTCTTTCACACCGGAGCAAAGTGTTATCAAGGAGACAACTGCAAGTTCTCCCATGAGCCTTTAACTGATGTCACCAAGGAACTTTTGGATAAGATCTTAAATACAGATGAGGAAACTGTCCATGAAGACGAAATTGAGTTAGAAAATCTGAGAAAACAAGGAATTGCCCCCCTGCCTAAACCCCCTCCAGGTGTTGGATTATTACCCACTCCTGGGCCTGGAAGTCCCACAGATGGAAGCAAGAAGATCCCTTCACTGTTTGAGATCAAAGTTCAGCCTACTGTGGACTTGGCACAGAAAATCGCTCTAAGACCCAATTTCTACAACAGCACATCTCCCCCTGCTGGACAGTTTCAAGGTGGTCCACAGTTTGGCAGCAGCCCTGAGGACATGCAGGCTGGCAATATGATGTCTCCTCCACCCAATCCTTCACATTCTCCTCATCCAGGCACAATGGGGAGTCCTCCACCACCATTCACAGGTCCAGTAATTCCCCAAAGCCCTCCATGCCAACCTCCACCACAAGGCTTTCCTATGCCACCTCCAGGCCAGCCACCAGCTTTCCACGGCAGCATGCAGCACATGAGCTGTCCTCCAATCAATCAACAGGGGGCTCCATTTCCACCCATGCCGGATATGCCTTCAGAGTTCTTCAAGAATTTGTTTAGCAGCCAGTCTCTTACTCAAGGGGATGAGGGAcccatgcaggactcccagacaCATGGTAACACCGATTCCAGTGGCATGCAGGACTTCCTTCCGGCTGTACAGAAGGCTTTGCTTTTACATCTAAACCAGAACAAGCAGGACTCTGACTCTCACAGGGAGGAAGGACAAGGGTCTACACCTTCCAACAGAGATAAAGACGAAACTCCTAACTGGTACTCCAGCGACGACGAGGAGGGCAGTAGTGTAAAAGCAATCCTTAACACACTCAAAAAGCAGAACGAAATGCTGAAAAACCAACCCAGCGTGGCACCAGCTGACCCAAGACTCCAGAAGGAACGCGCAGACCCACGTCAGCGTCCACCAGACCCCAGAAAAGAGGATGCTGTCGGAGACCCCAGGCTTGCCAGAGACCCACGCAAATTAAAACCTTCAGATGCCCCCAAACCTGACCCTCATCATCGGCACCCGAATCCCTCTGTATCCCATAAAACCCCAGCAGGAGAGGACGATGATGAATGCGAAAGAGAGCTTCGTGAGCGTGCAGTTCTAATCCCGCTAGATCCCATTCCCGGAGGAACCCAGCGAGACCCGCGCTGTCAAATCAAACAATTCAGTCACATCCGAGTGGATATTCTCCTCCAGCGTCCGGCTTTTTCTCAAACCGTAATTTGGGCTCCAGAAGACCTCATCCCGTCGTTGATTCCCAAACAGGAGCACTCCATAAACCTGCCGCTTCCACCGTTAATCGCTGACGCGCAATTAAACCGTAGCCTTTCGTCTCCACCTGATCACCCTCCGTCTGTAACTCTGAGTCCTCCAGATCCACGTTTGGCCGCGGCACGCTTTAAAGAGGGCGTCGTGCGGATTGGAAGTCCGCCTGGTAGGACTGTAGATCCTCGACATCAAGACAAGCCTACAGATCCACGCACTCATAAAGCGCTCGATCCCAGAATAAACCGCTCCGGAAGTCTAGACTCCAAGCTCCCGGTTGCTAAAGAGAGTCCAATCGAAAGAGTGGATCCGAGAATACAGCGTGCGTCCTCAAACCAACCGGTTAGTGTGGAAAAGTCTGAAAAGTTGCCTCCGTATGCACCACGTCTGGCTTCATCGATGGGTGCTGGTCTTGAAAGCCCAACCACATTGTTGGGTGGGATTAGTTTATATGATCCACGTAATCACAGCTTACTTTCTCCAAAACGGGAAAGCGAGGAGATGCCTAGAAAGTCAGGGATACTAAAGCCGCCGTCTACAAAGTTGTCTCCTCCTCATGAATCACCAGAAAAGGATGATAAAAACACTATCGAGGACTCTGAGAGCAATGCAAGTGTGTCGATTCCTCCAGTGCCTACAGTAATGCCGGCGTCTCCTTGTTCTCCTGTTTTGGCGGCAGCTCCAGCAGTGCATAATTTACCCATTCAGGCACTGGCAGGACTGATACGGCCTGCATATACTGACCCACGGCAAAACAAACCTGTCGGCTCCACTGGTGCAAATGCACCGGAGGAAGAAGAGGACAAAGACAGTAAGAAGAAAGACAGGCCTTTAAGGGATGTCTTTAAAACATTTGACCCTACAGCATCACCATTCTGTCAGTAA

Function

symbol description
zc3h6 Predicted to enable metal ion binding activity. Is expressed in brain; digestive system; eye; head; and liver.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000075165

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012260 True 3120 mRNA 0.49 13 47821524 47839365

Neighbor

gene id symbol gene type direction distance location
XLOC_006255 zmp:0000001006 coding upstream 5476 47810211 ~ 47816048 (+)
XLOC_006254 TMEM87B coding upstream 93913 47710434 ~ 47727611 (+)
XLOC_006253 mertka coding upstream 129814 47623916 ~ 47691710 (+)
XLOC_006252 lhcgr coding upstream 202677 47573405 ~ 47618847 (+)
XLOC_006251 NA coding upstream 460248 47353962 ~ 47361276 (+)
XLOC_006257 AL772263.1 coding downstream 64703 47904068 ~ 47904182 (+)
XLOC_006258 CU986283.1 coding downstream 206747 48046112 ~ 48046228 (+)
XLOC_006259 NA coding downstream 223760 48063125 ~ 48064309 (+)
XLOC_006260 msh6 coding downstream 519102 48358467 ~ 48381055 (+)
XLOC_006261 FOXN2 coding downstream 642891 48482256 ~ 48551810 (+)
XLOC_006249 NA non-coding upstream 367616 47189134 ~ 47453908 (+)
XLOC_006250 NA non-coding upstream 592228 47227236 ~ 47229296 (+)
XLOC_006248 CR847786.1 non-coding upstream 771498 47049912 ~ 47050026 (+)
XLOC_006246 NA non-coding upstream 834342 46986747 ~ 46987182 (+)
XLOC_006262 NA non-coding downstream 713341 48552706 ~ 48556760 (+)
XLOC_006263 NA non-coding downstream 729622 48568987 ~ 48587410 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_00368639_00375465 ZC3H6 coding CI01180000 null 368639 ~ 376247 (+)