XLOC_006268


Basic Information

Item Value
gene id XLOC_006268
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 48902167 ~ 48963841 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013428
tgctaacattgtGTTCAGTTAtgcggaaaaaaaaacatgatggaaaaactttttaaaattaaaacatgataacATTGTGGCGATCTTGTTATAAACATGTTGGCAAGATGTTAaatcatgttagcaacatgttaaaacatgttagcattaTGGTAAATTGTACTGGAAAGCATGCTATGTAAAGTGTCTTATCTTTTTAATGTTAAACCAGTCTAGCCACATATTAAAACTTGTTAGCAATATGTTAAAACCTATTAGCAATATGTTTGCCAGTCTAGCAACGttaacatgtattgttctctgttTTGTGTCAGATTGTGACGCGCGGCTGCGAGACCACAGAAATGACCCTGCGCAGGAACGGCCTCGGGCAGCTGGGCTTCCATGTGAACTTTGAGGGCATCGTGGCGGATGTGGAGCCGTTCGGGTACGCCTGGAAGGCTGGTCTGCGGCAGGGCAGTCGGCTAGTGGAGATCTGCAAGGTGGCAGTGGCGACGCTCACCCACGAACAGATGATCGACCTTCTAAGGACATCCATCTCTGTTAAGGTGGTGATCATCCAGCCGTACGAGGACGGAGCTCCTAGGAGGGGTTGTTCGGAGCTTTACCGTATCCCCATGGTGGAGTATAAGCTGGACAGTGAAGGAACTCCCTGCGAGTACAAGACGCCCTTTAAGAGGAACACCACGTGGCATCGTGTGCCCAGCAGCGGGCAGGCTGTTCCCCGCGGGTCTCCCACACAGGGGCCCGAACGCCCGGCTGGCCAGCAGCTCCAGAGTGGGCAGAGTGGCATCCCGCGCAGCACCTCCTTTGACAGAAAACTGCCCGACGGACACAGGAATGTTCAGGATGTAGAAAACCCTCAGATGTCGTCATGTAGCAAAACAGAGGCGTCTCAACATTACCGCAGTTCACCCAGTAACCAGTCGTCCTCCAGTGATCCCGGACCCTGCGGCAGCGCCAGCTGGAGCCAGCAGCATCCACCATACGATGgGTGTCAGTCTCCTGTTCTCCACGAGCGCTCAGCTGAAGCCCAGGGCATGATGGGAGATGGAGAGATGCTAAGAGAGAGAGAGcccacactggagagaacacGCTCCGCAGAGGCAAAGTGGCACGTTCCCTCAACCAAGATCCTCAACTCTCTGAAGGAAAGAGGAAAGGATTCGCCAAACAAGTTGACGCGGCAGGGCGGCGATAAAAACTCCAGCCACTCCAGCAGCAACACTCTGTCCAGCAACGCCTCCAGCAGTAACAGTGATGAGAAGCACTTCGGCTCCGGTGACCTGATGGATCCTGAGATGCTGGGTCTCACCTACATTAAAGGAGCGTCCACAGACAGCGGGATTGACACTGCTCCCTGCAGCATGACTCCAGGGGGCGCCGGTGCTCCAGCGTCCCGCGTCATGCTGCAGGGCCGGGGCGCGTCTGATCCGGGCCACCCCTGGACGCCCGAGCTGACAGAAGAAGGGCCTACAGAAGAGGACCACAACAGGTTATACCTTCCCCAAAGCTACGCCGCGGATCTGGCCACCGGACACAACCCTGCAGATGGCAGTATGGGAGACCTGAGCGAGATTTCCTCTCATTCTAGGTGAGTTCTAGGTCTGTTGGActctttttaatctgtttttaaagggctcctatttgACCGCTTTTACAAGAAGTAAGATAAACCTTCGGTGTCTCCATATTGTGtttttaaagtttcagctcaaaatacccattagATTATTCATTCTATCAGTCAGAATAAGCTCAGTTTGTGCTCAGAGCAATGTGTCCCTCTTTTTGTAGCCTGttcctttaatgcaaatgagctggttatCCCCAGTCCACTATTCCTACTGCATCAAtttagataaacagcagtcagtgaaaGAGTTAAACATGGAAGAAGCAGATTCAGTTGATGAGTTTATGAGTCAAATATCGCAAGTACGTTTATTTGATATAtctgtggtggagtttattcgaaaaaaaaaagatgcattgtTTTctgcaatgagtcacacacaaatgccattacaaacttcaaagtacacacacacacagtttttgcATAGACTCTCGAATAACATCTATGTCTTTATtataaacatgctctgttttaaaaacatcttgtaaaactcatttttaAGGTGCAGCTGAGAGTTGAACAGATCTTTAAGTCTGTTTCTTTGCGAACCCTGTTCTGTGGATATGTCatgcgttactatggagacatgtaaatatgtgcctgtcaatcaattccaataatatccagctgcagatcCGCACACGTTTTAGGACACCGAGTTCAGCTCATACGATCTAGGCAGTAGCAAACCATACATGGTTACGACGGATGTTTATGTTATTAATGTTTTACCttgtcatcattatatttatataaatatattgtttatatatagttTACACAATAGGCAGTAGTGTATACTATTTTACAAGCATAGCGAT
>TCONS_00013430
tgctaacattgtGTTCAGTTAtgcggaaaaaaaaacatgatggaaaaactttttaaaattaaaacatgataacATTGTGGCGATCTTGTTATAAACATGTTGGCAAGATGTTAaatcatgttagcaacatgttaaaacatgttagcattaTGGTAAATTGTACTGGAAAGCATGCTATGTAAAGTGTCTTATCTTTTTAATGTTAAACCAGTCTAGCCACATATTAAAACTTGTTAGCAATATGTTAAAACCTATTAGCAATATGTTTGCCAGTCTAGCAACGttaacatgtattgttctctgttTTGTGTCAGATTGTGACGCGCGGCTGCGAGACCACAGAAATGACCCTGCGCAGGAACGGCCTCGGGCAGCTGGGCTTCCATGTGAACTTTGAGGGCATCGTGGCGGATGTGGAGCCGTTCGGGTACGCCTGGAAGGCTGGTCTGCGGCAGGGCAGTCGGCTAGTGGAGATCTGCAAGGTGGCAGTGGCGACGCTCACCCACGAACAGATGATCGACCTTCTAAGGACATCCATCTCTGTTAAGGTGGTGATCATCCAGCCGTACGAGGACGGAGCTCCTAGGAGGGGTTGTTCGGAGCTTTACCGTATCCCCATGGTGGAGTATAAGCTGGACAGTGAAGGAACTCCCTGCGAGTACAAGACGCCCTTTAAGAGGAACACCACGTGGCATCGTGTGCCCAGCAGCGGGCAGGCTGTTCCCCGCGGGTCTCCCACACAGGGGCCCGAACGCCCGGCTGGCCAGCAGCTCCAGAGTGGGCAGAGTGGCATCCCGCGCAGCACCTCCTTTGACAGAAAACTGCCCGACGGACACAGGAATGTTCAGGATGTAGAAAACCCTCAGATGTCGTCATGTAGCAAAACAGAGGCGTCTCAACATTACCGCAGTTCACCCAGTAACCAGTCGTCCTCCAGTGATCCCGGACCCTGCGGCAGCGCCAGCTGGAGCCAGCAGCATCCACCATACGATGgGTGTCAGTCTCCTGTTCTCCACGAGCGCTCAGCTGAAGCCCAGGGCATGATGGGAGATGGAGAGATGCTAAGAGAGAGAGAGcccacactggagagaacacGCTCCGCAGAGGCAAAGTGGCACGTTCCCTCAACCAAGATCCTCAACTCTCTGAAGGAAAGAGGAAAGGATTCGCCAAACAAGTTGACGCGGCAGGGCGGCGATAAAAACTCCAGCCACTCCAGCAGCAACACTCTGTCCAGCAACGCCTCCAGCAGTAACAGTGATGAGAAGCACTTCGGCTCCGGTGACCTGATGGATCCTGAGATGCTGGGTCTCACCTACATTAAAGGAGCGTCCACAGACAGCGGGATTGACACTGCTCCCTGCAGCATGACTCCAGGGGGCGCCGGTGCTCCAGCGTCCCGCGTCATGCTGCAGGGCCGGGGCGCGTCTGATCCGGGCCACCCCTGGACGCCCGAGCTGACAGAAGAAGGGCCTACAGAAGAGGACCACAACAGGTTATACCTTCCCCAAAGCTACGCCGCGGATCTGGCCACCGGACACAACCCTGCAGATGGCAGTATGGGAGACCTGAGCGAGATTTCCTCTCATTCTAGTGGCTCCCACCACTCCGGCAGCCCGTTACCCCACAGCTCTCAGATCACATCCCGTGCTGAATGCCCGGAAGCCCAGAGCGCCCCCTACAGTAGCCAGGATCCCGGGCCCAGCATtgacctgcacacacacagccaaCATAAGAGGACAGATGACAaacccatcccggacgagccccccaTTCAGTCAGAgtatggTGGAGCCGAGAGCTTGTTGTGTTTCCTTCTCAAGGCTCTGTCCGAGCGCTCCaggtatatatgtgtatgtttgtgctcACGCTATTGGTGAACTTTCCCCTCTGAACTTTCCCCTCTGGACCCCTGACCTTTGTGTTCTCCTCACCGTTTACAACTGGAAATGAGCAATTCCTGCATTGCGGATGTGACATCTGCTGTAAAAACTTGAAACATACATTCACTGAGAATgtctatggcaggggtgtccaaagtcagtcctggagggctggtg
>TCONS_00013429
tgctaacattgtGTTCAGTTAtgcggaaaaaaaaacatgatggaaaaactttttaaaattaaaacatgataacATTGTGGCGATCTTGTTATAAACATGTTGGCAAGATGTTAaatcatgttagcaacatgttaaaacatgttagcattaTGGTAAATTGTACTGGAAAGCATGCTATGTAAAGTGTCTTATCTTTTTAATGTTAAACCAGTCTAGCCACATATTAAAACTTGTTAGCAATATGTTAAAACCTATTAGCAATATGTTTGCCAGTCTAGCAACGttaacatgtattgttctctgttTTGTGTCAGATTGTGACGCGCGGCTGCGAGACCACAGAAATGACCCTGCGCAGGAACGGCCTCGGGCAGCTGGGCTTCCATGTGAACTTTGAGGGCATCGTGGCGGATGTGGAGCCGTTCGGGTACGCCTGGAAGGCTGGTCTGCGGCAGGGCAGTCGGCTAGTGGAGATCTGCAAGGTGGCAGTGGCGACGCTCACCCACGAACAGATGATCGACCTTCTAAGGACATCCATCTCTGTTAAGGTGGTGATCATCCAGCCGTACGAGGACGGAGCTCCTAGGAGGGGTTGTTCGGAGCTTTACCGTATCCCCATGGTGGAGTATAAGCTGGACAGTGAAGGAACTCCCTGCGAGTACAAGACGCCCTTTAAGAGGAACACCACGTGGCATCGTGTGCCCAGCAGCGGGCAGGCTGTTCCCCGCGGGTCTCCCACACAGGGGCCCGAACGCCCGGCTGGCCAGCAGCTCCAGAGTGGGCAGAGTGGCATCCCGCGCAGCACCTCCTTTGACAGAAAACTGCCCGACGGACACAGGAATGTTCAGGATGTAGAAAACCCTCAGATGTCGTCATGTAGCAAAACAGAGGCGTCTCAACATTACCGCAGTTCACCCAGTAACCAGTCGTCCTCCAGTGATCCCGGACCCTGCGGCAGCGCCAGCTGGAGCCAGCAGCATCCACCATACGATGgGTGTCAGTCTCCTGTTCTCCACGAGCGCTCAGCTGAAGCCCAGGGCATGATGGGAGATGGAGAGATGCTAAGAGAGAGAGAGcccacactggagagaacacGCTCCGCAGAGGCAAAGTGGCACGTTCCCTCAACCAAGATCCTCAACTCTCTGAAGGAAAGAGGAAAGGATTCGCCAAACAAGTTGACGCGGCAGGGCGGCGATAAAAACTCCAGCCACTCCAGCAGCAACACTCTGTCCAGCAACGCCTCCAGCAGTAACAGTGATGAGAAGCACTTCGGCTCCGGTGACCTGATGGATCCTGAGATGCTGGGTCTCACCTACATTAAAGGAGCGTCCACAGACAGCGGGATTGACACTGCTCCCTGCAGCATGACTCCAGGGGGCGCCGGTGCTCCAGCGTCCCGCGTCATGCTGCAGGGCCGGGGCGCGTCTGATCCGGGCCACCCCTGGACGCCCGAGCTGACAGAAGAAGGGCCTACAGAAGAGGACCACAACAGGTTATACCTTCCCCAAAGCTACGCCGCGGATCTGGCCACCGGACACAACCCTGCAGATGGCAGTATGGGAGACCTGAGCGAGATTTCCTCTCATTCTAGTGGAGCCGAGAGCTTGTTGTGTTTCCTTCTCAAGGCTCTGTCCGAGCGCTCCaggtatatatgtgtatgtttgtgctcACGCTATTGGTGAACTTTCCCCTCTGAACTTTCCCCTCTGGACCCCTGACCTTTGTGTTCTCCTCACCGTTTACAACTGGAAATGAGCAATTCCTGCATTGCGGATGTGACATCTGCTGTAAAAACTTGAAACATACATTCACTGAGAATgtctatggcaggggtgtccaaagtcagtcctggagggctggtg

Function

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0033596 TSC1-TSC2 complex cellular_component

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013428 False 2460 lncRNA 0.47 6 48902167 48952091
TCONS_00013430 False 2060 lncRNA 0.54 8 48902167 48963841
TCONS_00013429 True 1865 lncRNA 0.53 7 48902167 48963841

Neighbor

gene id symbol gene type direction distance location
XLOC_006267 CU651669.1 coding upstream 60410 48765887 ~ 48841757 (+)
XLOC_006266 NA coding upstream 169134 48729645 ~ 48733033 (+)
XLOC_006265 si:ch1073-268j14.1 coding upstream 249582 48617974 ~ 48652585 (+)
XLOC_006264 NA coding upstream 284643 48615112 ~ 48617524 (+)
XLOC_006263 NA coding upstream 314757 48568987 ~ 48587410 (+)
XLOC_006270 CABZ01005325.1 coding downstream 18845 48982686 ~ 48982800 (+)
XLOC_006271 egln1a coding downstream 211783 49175624 ~ 49206713 (+)
XLOC_006272 NA coding downstream 319932 49283773 ~ 49287310 (+)
XLOC_006273 NA coding downstream 344709 49308550 ~ 49313340 (+)
XLOC_006274 ggps1 coding downstream 763492 49727333 ~ 49769372 (+)
XLOC_006262 NA non-coding upstream 345407 48552706 ~ 48556760 (+)
XLOC_006275 NA non-coding downstream 861719 49825560 ~ 49825898 (+)
XLOC_006276 NA non-coding downstream 901331 49865172 ~ 49867408 (+)

Expression


Co-expression Network