XLOC_006272


Basic Information

Item Value
gene id XLOC_006272
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 49283773 ~ 49287310 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013431
cgtggaTGGAATCTGTGACTCTGATCATGTGTAATGTACAGTAATTGCTGTGGATGGTTTGTGTTGGGCAGATGTGGCATATGTGTTTCACTCACTGGATTAATGTCAGACCTGGAGCAGAACAAATGAATGAGACGTCACTTCTGCTTAGAGCGACACACAGCTAGACCAAACAGACAAAGACGGAGAAAGAAGACAAAGAGAATTGAGGGCATGAGTTGCCATGGCGACGGTCAGACTGCGCAGGGTTACCGGGGTGAGACTGCAGGGGATTTTCGGATGAAGTGTGTCAGTGTCGCAGTCGTGCATCTCCTCCTACTCCGGCCTTTGATCAGAGACACAAGTCGGGTGTTGAGTGACGTCTGCAGGAAGATCTGGAGGGGGCAGAAGATGCTGTTTCCTCGGGGTCCGGGACCCCTGATGACCTCTGCTATTGTTGAAGAGCTGGCAAGGAAATGTAGACACAGCAGCCTGTGGGCAGTGGATCAGACAGCATcaaaaccaacacaggctcattctgaaaatgtagccctatatacatttctggagaatgcaaattatgtagccagaggtacgtatggctgcatttcgtctttaaaataaagactacgaggcagtatgacgccgttccttttcatgcttacctccgtatgaacGGCTTTACCAGCTTGT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013431 True 672 lncRNA 0.49 2 49283773 49287310

Neighbor

gene id symbol gene type direction distance location
XLOC_006271 egln1a coding upstream 77060 49175624 ~ 49206713 (+)
XLOC_006270 CABZ01005325.1 coding upstream 300973 48982686 ~ 48982800 (+)
XLOC_006268 NA coding upstream 319932 48902167 ~ 48963841 (+)
XLOC_006269 CABZ01030259.1 coding upstream 380714 48902945 ~ 48903059 (+)
XLOC_006267 CU651669.1 coding upstream 442016 48765887 ~ 48841757 (+)
XLOC_006273 NA coding downstream 21240 49308550 ~ 49313340 (+)
XLOC_006274 ggps1 coding downstream 440023 49727333 ~ 49769372 (+)
XLOC_006275 NA coding downstream 538250 49825560 ~ 49825898 (+)
XLOC_006276 NA coding downstream 577862 49865172 ~ 49867408 (+)
XLOC_006277 gpr137ba coding downstream 864097 50151407 ~ 50171965 (+)
XLOC_006266 NA non-coding upstream 550740 48729645 ~ 48733033 (+)
XLOC_006280 NA non-coding downstream 1096604 50383914 ~ 50390410 (+)
XLOC_006281 NA non-coding downstream 1164594 50451904 ~ 50454700 (+)

Expression


Co-expression Network