XLOC_006274 (ggps1)


Basic Information

Item Value
gene id XLOC_006274
gene name ggps1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 49727333 ~ 49769372 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012275
ATGAGCTTCCTGTCAGACTCAGACATGACACATCAGCCGAAGGCTCTCTGGCGCGGCATAAAAACCCATTCTGCCTTCATATAACTGGATATTACAGCCTTAAGGATGATAAGGGACCGTTTTAAACGCGTTATAAATGAGCTGTGAGTCGAATTGGAGTTAAATTGTCGTCCTTGGCTAACTGGCTAATGCTAGCGAGCTGGCTGACGGTGGAGAAAAAAACTGAAAGCGGAAGAGTGACGTGCTGGATTACCGAGGCGGAAGTGACAGAGCGCAGATTTTCCTTCTGGAAGGTTTGGATATACAGAGGGATGGATGAAAAGCAAAGAGCCACTTCTGAACGGATTCTTCTGGAACCGTACAAGTATTTATTACAACTGCCAGGAAAACAAGTCAGAACAAAACTCTCTCAGGCGTTCAACCACTGGCTCAACGTCCCAGAGGATAAACTTCAGGTGATCATCGAGGTGACGGAGATGCTGCACAATGCAAGTCTGCTGATTGATGATATTGAGGACAGCTCGAAGCTGCGGAGGGGTTTCCCAGTGGCCCACAGCATCTACGGCATCCCGTCGGTCATCAACTCTGCAAACTATGTGTATTTCTTGGGCCTGGAGAAGGTGCTGAtgctggagcacccggaggcggTGCGTGTTTTCACCCGGCAGCTGCTGGAGCTGCACCGCGGCCAGGGTCTGGACATCCACTGGCGGGACACATACACCTGTCCCAGCGAGGCTGAGTACCGCGCCATGGTGCTGCAGAAAACCGGAGGCCTCTTTGGGCTCGCTGTAGGCCTCATGCAACTCTTTTCTGACTGGAAACGAGATCTGAAGCCACTTTTAGACACTCTAGGGCTGTATTTCCAGATCCGGGACGACTACGCTAATCTGAACTCCAAAGAGTACAGCGCTAACAAAAGCTTCTGTGAAGACTTGACCGAAGGAAAGTTCTCGTTTCCCACCATTCACGCCATCTGGTCGCATCCTGAGAGCACACAGGTGCAGAATATTCTGCGTCAGAGAACGGAGAACTTGGATATTAAGCGGTACTGTGTGGATTATCTGGAGAAGGTGGGCTCGTTTGCTTACACCCGGCAGACGCTGCTGGATCTGGAGGTGGAGGCTTACAGGCTGATTAAGGAGCTCGGGGGAAACCCGGAACTGGAGGCTTTAGTGGAGCATCTGAGCCGCATGTATAAAGAGCCTGAGGGCGGAGCTACTGTAAGCCAATCAAAATAAACTGAGGCGGAGCTACAGCTGGGCATTCAAATGAGTTCAAGGGCAGAGATGCATTAGTTAAAACAGTCTGGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTCAAGGGCAGAGATGCATTAGATAAAACAGTCTGGGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTCAAGGGCAGAGATGCATTAGATAAAACAGTCTGGGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTCTGGGGCGGAGatgcattagttaatacagtCTGTGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTTTGGGGCGGAGatgcattagttaatacagtCTGTGGGCGGGGCTACAGCTGGGCAGGCATAAGAGTTCAAGGGCAGAGATGCATTAGATAAAACAGTCTGGGGCGGGGCTACAGCTGGGCAGGCATAAGAGTTCAAGGGCAGAGATGCATTAGATAAAACAGTCTGGGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTCTGGGGCGGAGatgcattagttaatacagtCTGTGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTTTGGGGCGGAGatgcattagttaatacagtCTGTGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTCAGGGGCGGAGatgcattagttaatacagtCTGGGGGCGGGGCTACAGCTAGGCATTCAAAAGAGTTCAGGGGCGGAGatgcattagttaatacagtTTGGGGGCGGGGCTACAGCTAGGCAGGCAAAAGAGTTCTGGGGCGGAGATGTATTGGTTAAAATGGTCTGGGGTGGGGCTACAGCTGGGCAGTCAAAAGAGTTCAGGGGCCGAGATGTATTAGTTAAAACAGTATGGGGCGGGGCTACAGCTGGGCAGTCAAAAGAGTTCAGAGGCGGAGTTGTATTAGTTAAAATATTATGGGGGTGGGGCTACAGCTGGGCATTCAAAAGAGTTCAGGGACAGAGATGCATTAGTCGGTTAAAAGAGTGGAGGGTGGAGCTTCAGCTGGGCATTGAAGAGTCTGGGGCGAGGGTGCAGCTAAGTATTTAAATGTCTGAGGGTGGAGCTGCAGTCAGCCAGTTAAAATAGTACTGAGATGGAGATGAGTATTTTAAAGTACATGGGCGGAGCTGTAGTCAGCCATTTAAAATAGTATGGGGTGTGGCTTCAGCTTGGAATTCAAGAGTCTAGGGCGGGGCTACAGCTGAGTGTTTAAATGTCTGGGGGTTGAGCTGTATGCAGCCAGTTAAAATAGTGTGGAGGTGGAGCTGAGCATTTAAAATATGGGGGTGGAGCTGCAGTCACCTTGTCTAAATAGTACAGGGGTGGAGCTTCAGCTGGGCAATCAACATTTTTTTGGGGTGGAGCTGTAGTCAGTCAGTTAAAATAGTATGGGGGTGGCCTTTCAGCTGGGCAATCAAGACTTTGGGGGGTGGGGCTATAGCCGAGCATTTTAAAGTCTGGCAGTGGAGCTGCAATCAGCCAATTTAAATAGCATGGGCAGGGCTTCAGCTGGGCAGTCAAAAGAGTCTGGCGCAGAGCTGCAGTAAGCCTGTTATAATAGTATGGGGTAAAGCCAGTGCTACTGAAGCATTTATAAGTCTGGAATCTGGAAGAAGAGCTCAGCCTGTTTAAATAGAATGGGTGGAGCTGGGCATTTAAAAGTCTGGGGGTGGAGCTACAGTCAGCTAGTTAAAAAGTATGAGGGCGGAGCTTCAGTCAGGCACTCAGAAGAGTCTAATGCTGATGATTTACAGGGCAACTTTTGGGAAACTATGCCATAAATGGGCAATCAGGTGTGACCAGGGTAACTAATTAGAGCAATGGGTTACAGATACAATACTGTTGCCCATTCTTAATAGAAACATTGCCAAGCAAACATCGCTCTGGAAAATTACCTGGCAACACTGATCCTGAAGTGTCCCTAGTGTTTCATCAGGAGGAGGCGGAGCTGCAGTCAGACATTTAACATAGTATGGGGCGGAGCTGAGCATGCAAAAGTCTGGGGCGGAGTTGTAGTCAGTCAAAATAGTATAGGGCGGAGCTTCAGCTGGGCACTCAGGCAGAGCTGCAGTCAGCCAATCAAAACAATGACTCATGCTAATCAGGTCTGCACTGTGAATGAACCatttctgtagtatttgtttagACTGAGGGCAGGAAACAAAGTCTGTTCTGTTTGATTCGTATTTCATAGACTTGTGAAATTGGCGTCTTAAATATTTGGTCATTTTCCATGGttaaatatatgaagagtttccTTATAAATGAACCATAAAAACTCTCAGATTATACAaccatttaatgtttaaatgattaatgatttCACCACAAATTATATTGACTAAGAGGATGTTCATGGACCTTTCTTTTTGTAttacttattgttattattaacatgTCGACTGTTTTCATTATTAAACCAATATTTTAGTAATGATCATGGTTATTATATGATTAGTGATATTCTGCTCTTTTGCCTTTGAGAATGTTGAAGTcagcacattcatttatttattcttcctCATTAAGAGATCGTCATGTGAGTGAATAATGTCATACACGGTTTATTCAGCTGACGTGATGAGGCCTTATGTTCACGTGTGGATACTCCAACACTCCTGAATGTCTGTCGTTCGTGTGTTTCTGTTTAGCAGTTGTTGGGTTGTTTTTGGGGGCTGATGATGTTAAAGGACGCTGAACATTCACCTGAGGATCAAATAACTCTGAAATAGTGAATTTCGCACCATGTTTGATGTTTTACAGGTCATGTGCGTTTTATCAGACTCCTTCCACTTTtgattttgttcttttatttgttgTGTCTTTTGAATACTTCCCTGAATAAACATTCAGCCACTCATGTTCTCATCA
>TCONS_00012274
ATGAGCTTCCTGTCAGACTCAGACATGACACATCAGCCGAAGGCTCTCTGGCGCGGCATAAAAACCCATTCTGCCTTCATATAACTGGATATTACAGCCTTAAGGATGATAAGGGACCGTTTTAAACGCGTTATAAATGAGCTGTGAGTCGAATTGGAGTTAAATTGTCGTCCTTGGCTAACTGGCTAATGCTAGCGAGCTGGCTGACGGTGGAGAAAAAAACTGAAAGCGGAAGAGTGACGTGCTGGATTACCGAGGCGGAAGTGACAGAGCGCAGATTTTCCTTCTGGAAGGTTTGGATATACAGAGGGATGGATGAAAAGCAAAGAGCCACTTCTGAACGGATTCTTCTGGAACCGTACAAGTATTTATTACAACTGCCAGGTGATCATCGAGGTGACGGAGATGCTGCACAATGCAAGTCTGCTGATTGATGATATTGAGGACAGCTCGAAGCTGCGGAGGGGTTTCCCAGTGGCCCACAGCATCTACGGCATCCCGTCGGTCATCAACTCTGCAAACTATGTGTATTTCTTGGGCCTGGAGAAGGTGCTGAtgctggagcacccggaggcggTGCGTGTTTTCACCCGGCAGCTGCTGGAGCTGCACCGCGGCCAGGGTCTGGACATCCACTGGCGGGACACATACACCTGTCCCAGCGAGGCTGAGTACCGCGCCATGGTGCTGCAGAAAACCGGAGGCCTCTTTGGGCTCGCTGTAGGCCTCATGCAACTCTTTTCTGACTGGAAACGAGATCTGAAGCCACTTTTAGACACTCTAGGGCTGTATTTCCAGATCCGGGACGACTACGCTAATCTGAACTCCAAAGAGTACAGCGCTAACAAAAGCTTCTGTGAAGACTTGACCGAAGGAAAGTTCTCGTTTCCCACCATTCACGCCATCTGGTCGCATCCTGAGAGCACACAGGTGCAGAATATTCTGCGTCAGAGAACGGAGAACTTGGATATTAAGCGGTACTGTGTGGATTATCTGGAGAAGGTGGGCTCGTTTGCTTACACCCGGCAGACGCTGCTGGATCTGGAGGTGGAGGCTTACAGGCTGATTAAGGAGCTCGGGGGAAACCCGGAACTGGAGGCTTTAGTGGAGCATCTGAGCCGCATGTATAAAGAGCCTGAGGGCGGAGCTACTGTAAGCCAATCAAAATAAACTGAGGCGGAGCTACAGCTGGGCATTCAAATGAGTTCAAGGGCAGAGATGCATTAGTTAAAACAGTCTGGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTCAAGGGCAGAGATGCATTAGATAAAACAGTCTGGGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTCAAGGGCAGAGATGCATTAGATAAAACAGTCTGGGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTCTGGGGCGGAGatgcattagttaatacagtCTGTGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTTTGGGGCGGAGatgcattagttaatacagtCTGTGGGCGGGGCTACAGCTGGGCAGGCATAAGAGTTCAAGGGCAGAGATGCATTAGATAAAACAGTCTGGGGCGGGGCTACAGCTGGGCAGGCATAAGAGTTCAAGGGCAGAGATGCATTAGATAAAACAGTCTGGGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTCTGGGGCGGAGatgcattagttaatacagtCTGTGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTTTGGGGCGGAGatgcattagttaatacagtCTGTGGGCGGGGCTACAGCTGGGCAGGCAAAAGAGTTCAGGGGCGGAGatgcattagttaatacagtCTGGGGGCGGGGCTACAGCTAGGCATTCAAAAGAGTTCAGGGGCGGAGatgcattagttaatacagtTTGGGGGCGGGGCTACAGCTAGGCAGGCAAAAGAGTTCTGGGGCGGAGATGTATTGGTTAAAATGGTCTGGGGTGGGGCTACAGCTGGGCAGTCAAAAGAGTTCAGGGGCCGAGATGTATTAGTTAAAACAGTATGGGGCGGGGCTACAGCTGGGCAGTCAAAAGAGTTCAGAGGCGGAGTTGTATTAGTTAAAATATTATGGGGGTGGGGCTACAGCTGGGCATTCAAAAGAGTTCAGGGACAGAGATGCATTAGTCGGTTAAAAGAGTGGAGGGTGGAGCTTCAGCTGGGCATTGAAGAGTCTGGGGCGAGGGTGCAGCTAAGTATTTAAATGTCTGAGGGTGGAGCTGCAGTCAGCCAGTTAAAATAGTACTGAGATGGAGATGAGTATTTTAAAGTACATGGGCGGAGCTGTAGTCAGCCATTTAAAATAGTATGGGGTGTGGCTTCAGCTTGGAATTCAAGAGTCTAGGGCGGGGCTACAGCTGAGTGTTTAAATGTCTGGGGGTTGAGCTGTATGCAGCCAGTTAAAATAGTGTGGAGGTGGAGCTGAGCATTTAAAATATGGGGGTGGAGCTGCAGTCACCTTGTCTAAATAGTACAGGGGTGGAGCTTCAGCTGGGCAATCAACATTTTTTTGGGGTGGAGCTGTAGTCAGTCAGTTAAAATAGTATGGGGGTGGCCTTTCAGCTGGGCAATCAAGACTTTGGGGGGTGGGGCTATAGCCGAGCATTTTAAAGTCTGGCAGTGGAGCTGCAATCAGCCAATTTAAATAGCATGGGCAGGGCTTCAGCTGGGCAGTCAAAAGAGTCTGGCGCAGAGCTGCAGTAAGCCTGTTATAATAGTATGGGGTAAAGCCAGTGCTACTGAAGCATTTATAAGTCTGGAATCTGGAAGAAGAGCTCAGCCTGTTTAAATAGAATGGGTGGAGCTGGGCATTTAAAAGTCTGGGGGTGGAGCTACAGTCAGCTAGTTAAAAAGTATGAGGGCGGAGCTTCAGTCAGGCACTCAGAAGAGTCTAATGCTGATGATTTACAGGGCAACTTTTGGGAAACTATGCCATAAATGGGCAATCAGGTGTGACCAGGGTAACTAATTAGAGCAATGGGTTACAGATACAATACTGTTGCCCATTCTTAATAGAAACATTGCCAAGCAAACATCGCTCTGGAAAATTACCTGGCAACACTGATCCTGAAGTGTCCCTAGTGTTTCATCAGGAGGAGGCGGAGCTGCAGTCAGACATTTAACATAGTATGGGGCGGAGCTGAGCATGCAAAAGTCTGGGGCGGAGTTGTAGTCAGTCAAAATAGTATAGGGCGGAGCTTCAGCTGGGCACTCAGGCAGAGCTGCAGTCAGCCAATCAAAACAATGACTCATGCTAATCAGGTCTGCACTGTGAATGAACCatttctgtagtatttgtttagACTGAGGGCAGGAAACAAAGTCTGTTCTGTTTGATTCGTATTTCATAGACTTGTGAAATTGGCGTCTTAAATATTTGGTCATTTTCCATGGttaaatatatgaagagtttccTTATAAATGAACCATAAAAACTCTCAGATTATACAaccatttaatgtttaaatgattaatgatttCACCACAAATTATATTGACTAAGAGGATGTTCATGGACCTTTCTTTTTGTAttacttattgttattattaacatgTCGACTGTTTTCATTATTAAACCAATATTTTAGTAATGATCATGGTTATTATATGATTAGTGATATTCTGCTCTTTTGCCTTTGAGAATGTTGAAGTcagcacattcatttatttattcttcctCATTAAGAGATCGTCATGTGAGTGAATAATGTCATACACGGTTTATTCAGCTGACGTGATGAGGCCTTATGTTCACGTGTGGATACTCCAACACTCCTGAATGTCTGTCGTTCGTGTGTTTCTGTTTAGCAGTTGTTGGGTTGTTTTTGGGGGCTGATGATGTTAAAGGACGCTGAACATTCACCTGAGGATCAAATAACTCTGAAATAGTGAATTTCGCACCATGTTTGATGTTTTACAGGTCATGTGCGTTTTATCAGACTCCTTCCACTTTtgattttgttcttttatttgttgTGTCTTTTGAATACTTCCCTGAATAAACATTCAGCCACTCATGTTCTCATCA

Function

symbol description
ggps1 Predicted to enable prenyltransferase activity. Predicted to be involved in isoprenoid biosynthetic process. Orthologous to human GGPS1 (geranylgeranyl diphosphate synthase 1).

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function
GO:0004659 prenyltransferase activity molecular_function

KEGG:

id description
ko00900 Terpenoid backbone biosynthesis
ko01006 Prenyltransferases

ZFIN:

id description
ZDB-GENE-030131-8742 Predicted to enable prenyltransferase activity. Predicted to be involved in isoprenoid biosynthetic process. Orthologous to human GGPS1 (geranylgeranyl diphosphate synthase 1).

Ensembl:

ensembl_id ENSDARG00000023627

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012275 False 4132 mRNA 0.47 4 49727333 49769372
TCONS_00012274 True 4061 mRNA 0.47 3 49727333 49769372

Neighbor

gene id symbol gene type direction distance location
XLOC_006273 NA coding upstream 413993 49308550 ~ 49313340 (+)
XLOC_006272 NA coding upstream 440023 49283773 ~ 49287310 (+)
XLOC_006271 egln1a coding upstream 520620 49175624 ~ 49206713 (+)
XLOC_006270 CABZ01005325.1 coding upstream 744533 48982686 ~ 48982800 (+)
XLOC_006268 NA coding upstream 763492 48902167 ~ 48963841 (+)
XLOC_006275 NA coding downstream 56188 49825560 ~ 49825898 (+)
XLOC_006276 NA coding downstream 95800 49865172 ~ 49867408 (+)
XLOC_006277 gpr137ba coding downstream 382035 50151407 ~ 50171965 (+)
XLOC_006278 dnajc12 coding downstream 599296 50368668 ~ 50373021 (+)
XLOC_006279 cox5b2 coding downstream 606428 50375800 ~ 50378038 (+)
XLOC_006269 CABZ01030259.1 non-coding upstream 824274 48902945 ~ 48903059 (+)
XLOC_006280 NA non-coding downstream 614542 50383914 ~ 50390410 (+)
XLOC_006281 NA non-coding downstream 682532 50451904 ~ 50454700 (+)
XLOC_006282 NA non-coding downstream 701488 50470860 ~ 50471274 (+)

Expression


Co-expression Network