XLOC_006284


Basic Information

Item Value
gene id XLOC_006284
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 50488157 ~ 50490156 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013434
GAAAGCTCCATCACACTGTAGTATATTAACCATAGTGGACTGATTAACTAATAAACACTAGGAATGTAACGGTATTAAAATTTCAcgatacggtaatacctcggtatgaatggcacggtacggtatttattgaatcatttaaaggaaaaacaaaactattgaagagactcaaaaaaagtgccagaatgttcaggttaccttaacactgaacagatcaatgacatacaaatgatctatctgtaaactttcaaacaggaacttaaattattcaattttaataacaaaaaatattaaaccatataaaaaaaaaacaccactcgaaaggacaagccatgagtgaggtagaggtctcttggtggtacaagtcaatgtctccatcaatgtgagcagtgtgctgtgttctgctgtccccttgactaaaggaatccccatcatgttagtcgtattccccgacttgtatttcagcagtctggcagtgcctgcacacccttttttctgtcaccttttcttctttcttgtttcttttcagagagaaactgaaatgcttccacacatctgatttaaaacccgctttaggttcgaccatttttagctctttttctttgccgctactagcagcacactccatttccgcattactggatctgtagcgacaacagaccgcagaggatgatggccacgcctgggctgatgggaattgtagtttctgcTACCTCCCATTCGCTCCATTCACCTGAGCAAACTTCTCACCAAAAGACCTATGATTTATTGAGTCACaac

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013434 True 780 lncRNA 0.40 2 50488157 50490156

Neighbor

gene id symbol gene type direction distance location
XLOC_006282 NA coding upstream 16883 50470860 ~ 50471274 (+)
XLOC_006281 NA coding upstream 33457 50451904 ~ 50454700 (+)
XLOC_006280 NA coding upstream 97747 50383914 ~ 50390410 (+)
XLOC_006279 cox5b2 coding upstream 110119 50375800 ~ 50378038 (+)
XLOC_006278 dnajc12 coding upstream 115136 50368668 ~ 50373021 (+)
XLOC_006285 NA coding downstream 30469 50520625 ~ 50521600 (+)
XLOC_006286 dre-mir-202 coding downstream 112483 50602639 ~ 50602714 (+)
XLOC_006287 dntt coding downstream 288031 50778187 ~ 51021871 (+)
XLOC_006288 CABZ01077016.1 coding downstream 303600 50793756 ~ 50793872 (+)
XLOC_006289 CABZ01083953.1 coding downstream 510903 51001059 ~ 51001178 (+)
XLOC_006276 NA non-coding upstream 620749 49865172 ~ 49867408 (+)
XLOC_006275 NA non-coding upstream 662259 49825560 ~ 49825898 (+)
XLOC_006290 CABZ01078666.1 non-coding downstream 612588 51102744 ~ 51102859 (+)

Expression


Co-expression Network