XLOC_006285


Basic Information

Item Value
gene id XLOC_006285
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 50520625 ~ 50521600 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013699
atttaatTCCTCTCGCTTCAGTTTTCGACTATAAGCACAGCCCGTTTTCAGCAGTATCGGTAGCAGCACGTCTCAGATGTTCCTCCACCGTCTAATAAGAGAGTATTGTTTGGTGGAAGCGATGTATCGGACAGGGATGTTGTACACTCGACTGTTGTAAAACACCACCAGTGTGTATGGCTGCTGCGCATCTACACCAGAGCTTTTCCTCAGCAGAAAAGAGCCATCCTAAAATAAAGGTAG
>TCONS_00012280
GTTTTCAGCAGTATCGGTAGCAGCACGTCTCAGATGTTCCTCCACCGTCTAATAAGGGAATCCACCAGGACCAGAGGATTCTTCTGATGGTTCTCAATCATGTCACACACGCTGCTGAAACGCTTCACAGGCAGAAAAATCAGAGTTTAGAGACTGACAGATGACAACTTTCACCTCATATCTcccattgagAGAGTATTGTTTGGTGGAAGCGATGTATCGGACAGGGATGTTGTACACTCGACTGTTGTAAAACACCACCAGTGTGTATGGCTGCTGCGCATCTACACCAGAGCTTTTCCTCAGCAGAAAAGAGCCATCCTAAAATAAAGGTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094656

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013699 False 243 lncRNA 0.46 2 50520625 50521600
TCONS_00012280 True 336 processed_transcript 0.46 3 50520668 50521600

Neighbor

gene id symbol gene type direction distance location
XLOC_006283 CU570781.3 coding upstream 3400 50481817 ~ 50517225 (+)
XLOC_006284 NA coding upstream 30469 50488157 ~ 50490156 (+)
XLOC_006282 NA coding upstream 49351 50470860 ~ 50471274 (+)
XLOC_006281 NA coding upstream 65925 50451904 ~ 50454700 (+)
XLOC_006280 NA coding upstream 130215 50383914 ~ 50390410 (+)
XLOC_006286 dre-mir-202 coding downstream 81039 50602639 ~ 50602714 (+)
XLOC_006287 dntt coding downstream 256587 50778187 ~ 51021871 (+)
XLOC_006288 CABZ01077016.1 coding downstream 272156 50793756 ~ 50793872 (+)
XLOC_006289 CABZ01083953.1 coding downstream 479459 51001059 ~ 51001178 (+)
XLOC_006290 CABZ01078666.1 coding downstream 581144 51102744 ~ 51102859 (+)
XLOC_006291 CU929144.1 non-coding downstream 775953 51297553 ~ 51375708 (+)

Expression


Co-expression Network