LOC122342053 (trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752)


Basic Information

Item Value
gene id LOC122342053
gene name trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 738137 ~ 748364 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU158
NNNGAACTCAGAAGAAGAGCTGGATGAGTTTGTACTGAGTAAATATCAACGATCAGAAGAATGTCTTCTGAGGCTGCTGCCAGTGATCAAAGCATCTAGAAAGGCTGATCTCTCCTGCTGTTATATTACAAAGAAAGGCTGGTCTGCTCtgacttcagctctgagatcaaaccattcacacctgagagaactgaatCTGAGCCGTAATAAACTCAGTGATTCAGAAGTGCTCTGTGCTCTGCTGGAGGATCCTGTAAGCTGTAAACTGGAAAAACTACAGCTGAGTTACTGCAGTATTGGAGAGGAAGGCTGTGCTGCTCTGatttcagctctgagatcaaacccctcacactTGAAAGAACTGGATCTGAGCCGTAATAAACCAGGAGACTCGGgtgtgaagctgctctctgctCTACTGGAGGATCCACACTGTAAACTGGAGAAACTACAGCTGTGGGACTGCAGTATTGGAGAGGAAGGCTGTGCTGCTCTGatttcagctctgagatcaaattcctcacacctgagagaactggatcTGAGCTGTAATAAACCAGGAGAcacaggagtgaagctgctctctgctCTAGTGGAGGATCCACACTGTAAACTTAAGAAACTTTGGCTGTGTAACTGCAATATTGGAGAAGAAGGCTGTGCTGCTCTGAtttcagctctgagttcaaactcctcacacctgagagaactggatcTGAGCCTTAATAAACCAGGAGACTCAAGAGTAAAGCTGCGCTCTGCTCTACTGGAGGTTTCACACAGTAAACTGAAGAAACTATATATTTGACAGTGGAAACTCCACAAGCTTCAAACAACTAATTCAAAACATCACGTCCTGAGCAAGACTGTCACCTGCACATTAATGCTGATCCAACAGAGATTGGACATACTGcgctgtgaaaaaaaatgcataagtaCAGTATATTTGTCATGGAATGTGGTTGTACTCATGTAACACGATAAACAAAGGTTtctttaattctaatttaataagCTTTAACAGACATCCcattaaatgacattaattCATAGCAAATCAAAAGGGGAAACTGAATGCTTATAAGGACAGGGAAACAATCAGGGTGAACTGAAACAGGTGAAGAAACACAGGTGttttaactaataatattactaattgaggacaggaagaggaagggcCAAATAAGGACAAAGAGGACACATGGGGGAAAGAAACGCAACAGAACAGTCCGGGAATGTGGAGCCGAGAAGGACCAAGGCAGATCACGAGTCTCGGGGTGCTATTCAGGCAGTTCGGCGAGCCAATGCAGTGCAGGGAGCTTGAGAACCACAACCTTTTCCCATAGTCCACCAACCTTTGACTCGGCTACGGCTATATAGCTCCCGCTGACAAAATGTCTTGGGGACGTTATCCAGGGACCACAGATTTCAGGAGGCCATTAAGGAGTTTGTCACGTTATTCATGCTTCTGACATGACTAGATCAGAAATTTAAATTCTAAGAAAATGACCCAGAATACTTtataatacagtacatttctGGCATTATTTTCTGTTTCCTATAGCCTCTGGCTCTGTAACAGCAGGTTTAACTATCTTTAAGTAGGCTAAACTGTTGGGTATTTATCCCTGCTTTGGAACAAAATGTATTCAGTGAttacatatttctatttatatgaattattttctCATATACACCCAAAGCCATCTTTGTGtactacttttacattttaaaacctgtTCAGACCTAAGTTCAAACCACAGTGCAATACAAAAATGAACTATAGCTGCAAGCAGCAATGAACAGGCCCTCatttaaagaagaaatatataaatgatatgtaaaagcaatatatacagacgtggacaaaattgttggtaccctttggtcaatgaaagaaaaagtca
>XM_043235838.1
atgtttgaaaataaaaatgctaaactaGTTGAGTATCAGGAATCATATGAGCTGAGTTACTGCAGTATTGGAGAGGAAGGCTGTGCTGCTCTGatttcagctctgagatcaaacccctcacactTGAAAGAACTGGATCTGAGCCGTAATAAACCAGGAGACTCGGgtgtgaagctgctctctgctCTACTGGAGGATCCACACTGTAAACTGGAGAAACTACAGCTGTGGGACTGCAGTATTGGAGAGGAAGGCTGTGCTGCTCTGatttcagctctgagatcaaattcctcacacctgagagaactggatcTGAGCTGTAATAAACCAGGAGAcacaggagtgaagctgctctctgctCTAGTGGAGGATCCACACTGTAAACTTAAGAAACTTTGGCTGTGTAACTGCAATATTGGAGAAGAAGGCTGTGCTGCTCTGAtttcagctctgagttcaaactcctcacacctgagagaactggatcTGAGCCTTAATAAACCAGGAGACTCAAGAGTAAAGCTGCGCTCTGCTCTACTGGAGGTTTCACACAGGGGAGAGCCTACAGAAGTGAATCCTGGGCTGTTCCTGGACTCACCTACTGACAGTCCAGTCGTCAATCCTGCTTTTCCCACATtgagaGAAATTAACATTGACAGTATTCAGGCCCCAGAGCCCAGAACCAGAGATGAGTTCCTGCAGTATGCTTGTGATTTGACCCTGGATCCGAACACGGCCCATCGGCGTCTGGTCTTGTCTGACGAAGACACGGCGGCCACCCTTCAGCAGACCTCTCAGCCGTACCCAGACGTCCCTCAGCGCTTCGACGGCTGGACGCAGGTGCTCTGTCTGCAGCCCCTCTCCTCCGACCGCTGCTACTGGGAGGTGGAGTGGAGGGGGCGTGGTTCCTCTCTGGGTGTAGTCAGCGGGTCCATGTCCCGCAAAGGGGCGGATTCGGGGGCGGGGCTCGGGTATAACGGCCAATCGTGGAGCTTGGAGCTGTCAGACATGTGCTGCGCAGCCATGCACGCCAATCAGAAGGTGGAGATCCCTGTGACCTACAGCCCTCGAGTCGGGGTGTTTCTGGACAGGACCGCAGGGACTCTGACTTTCTATAGCGTGGATGATGAGTTGGTTCCTCTCCACACTTTTCAAGGGCTGTTCCCTCCATCGCTGTACGCCGCATTCGGGGTGGGCTGTGGGGTCGGCGTGGGGCTGGATTTTGCCATGGGACAGTTCAGCTCCGCGTCAGACAGCATTAAAATCTGTCCTTTGTGATCTCACAAAAAACATGCAGGTCATATTTCATTccgaaatcaaaatgaaaagaatcaaGGCTATTGGAAAGATCAAAATTATCTTTCATAAAGATTCAGTACTTCTCCCCTCCaaatttatattactttaacaCCTCTAGTAACTTGTacaattgtctttttttcatttctgcaaTACAACCATGGTAATCATTTTGTctagaccttttttttttaatctgccaaaaaaatgattatattataaaaaataaatgtacctaaaaatatgaaattacaccgtagataaaaaatattcttgtgccaaaatttagcattttacttTCATGGCTTATAGCTcacttaaatatttcatagtaATAACAATGATATTCatacttgacatgttaaaactTGTTGCTTTAATTCTAaagatgttttgatttttattgcaaaatgtaatttatttttctcttctaGACTCTTCACatgaaataattattcatgttaAGCAAAATAACTTGTGCATGAAGGGAAATTATTACTTTGTCATTATACTATAAAAATTTTGCAAACTTatggaaaaatgaaatgacaagaACATTGAATTTGatggttttattataaaaaaacaagataatCATACTAATACATGGTTCTGACAGCTAAGCACAGGAAAACACACTAAGGCCGTGGTTACTATGTCAACAGCACAAAAGAAATCACCTGGTGCTTGATGTCACAACTTGTGGCATCGTCTTCAAgcattgacctttgacctcaatGGCAGCAGAGGGCCTGATGACATCAACAGCAGGATGTAAATAAGGACACTTTGATGCAGAAATCAAATCATGCGTTTAATACCACACACTTCAGCTGGGATTAGAGATAAAGCTAGTGATGTACAGAAGCAGCAAGCATGCTGGTATTATTCTGAAGGAGGTGGTAATGCGATTCACTTTACCAAGTTTCGATTGTATTCTTGGCATAGCTGACAAAAGCTTATTAAAATGGCATTCCTGTAACAGTTTCTGGACCAAACTCATGGTTTTCCCTGTGCTGTCATCATGTCATTTACTAGAAAGCACAAAAGGTCAGTTTACCACAAAAACGAACACGTTTACGTACGGTTTAGCTTATAAAACGACAATTCAGGCAAGAAAGACAAATAATTTTGGTTTAAACCCAAAAAGGTCTTTGAAACTTGAGTCCCTTCTCAAactcgacaaaaaaaaaaacatgaaatatattaaaatctcaTTCCTAGCTGAATGGTTAGTAAATAATATTCGCTATCTCTCAGGTTAAGTGTATTAAGATAATCTAGTCTTACCTTACTGTTAGATAACACGCGTAACGCCTAGTTACTAAAAAACACAATTCTAG

Function

symbol description
trim25l Predicted to enable zinc ion binding activity.

NR:

description
PREDICTED: uncharacterized protein LOC107582366

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158 False 1907 lncRNA 0.47 6 741070 748364
XM_043235838.1 True 2642 mRNA 0.42 8 738137 745984

Neighbor

gene id symbol gene type direction distance location
LOC122353666 NA coding downstream 110319 627700 ~ 627818 (-)
trnag-gcc NA coding downstream 299009 439054 ~ 439128 (-)
lztfl1 lztfl1,LOC107701792,LOC107675311 coding downstream 304459 422900 ~ 433678 (-)
ccr9b ccr9b,LOC107598203,LOC107749654,LOC107675310,LOC107726711,LOC107703604 coding downstream 330051 404682 ~ 408086 (-)
gli3 LOC107749627,LOC107747788,LOC107554716,LOC107598194,LOC107694915,LOC107694564 coding downstream 376534 210723 ~ 361603 (-)
LOC122342059 ncam2,LOC107748174,LOC107756756,LOC107673712,LOC108426076,LOC107721821 coding upstream 17862 766226 ~ 826226 (-)
farp1 farp1,LOC107730395,LOC107677850,LOC107653673,LOC107560794,LOC107744955,LOC107559785 coding upstream 302382 1050746 ~ 1116435 (-)
kpnb3 kpnb3,ipo5,LOC107677849,LOC107653674 coding upstream 369477 1117841 ~ 1137065 (-)
LOC122353706 NA coding upstream 381135 1129499 ~ 1129637 (-)
rap2ab rap2ab,rap2a,LOC105911819,LOC106582448,LOC106512668,LOC101166017,LOC105933629,LOC103391592,LOC105907999 coding upstream 400308 1148672 ~ 1164935 (-)
G99 NA non-coding downstream 14101 723745 ~ 724036 (-)
G73 NA non-coding downstream 289497 448328 ~ 448640 (-)
G72 NA non-coding downstream 290255 447508 ~ 447882 (-)
G70 NA non-coding downstream 295928 441879 ~ 442209 (-)
G66 NA non-coding downstream 315728 422132 ~ 422409 (-)
G125 NA non-coding upstream 141880 890244 ~ 890587 (-)
G231 NA non-coding upstream 225382 973746 ~ 973969 (-)
LOC122347488 NA non-coding upstream 507825 1256189 ~ 1263203 (-)
G244 NA non-coding upstream 534474 1282838 ~ 1284809 (-)
G247 NA non-coding upstream 595934 1344298 ~ 1346789 (-)
G67 NA other downstream 302012 435808 ~ 436125 (-)
G20 NA other downstream 551052 186420 ~ 187085 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other upstream 327824 1076188 ~ 1231647 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 843705 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 1940401 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 2388144 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 3259476 4007840 ~ 4014287 (-)

Expression


Co-expression Network