LOC122347879 (msmo1,LOC107655978,LOC107745062,LOC107548349,LOC107750426,LOC107591587,LOC107702386)


Basic Information

Item Value
gene id LOC122347879
gene name msmo1,LOC107655978,LOC107745062,LOC107548349,LOC107750426,LOC107591587,LOC107702386
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10840428 ~ 10844345 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243148.1
GTCTGCTCTTGTCTCAGCCAATGGTCATATGTAAAGTTCTGTGACATTAAAAGCCATCGTAGAGCTGGCGCAGGTAGAAGAAGAGCTTCTCACAGTTACTCATCCGGAGAGTCCCACTGACTCGCTGCCATGGAGGTGAACGGCACAGCCAACATCCTGTCTTCAGCGTATCTGGCGGTGGAATTTGTGGATTCATTTCTTCCAGAAAATCCGCTGCAGGAACCTCTGCGGCACGCGTGGAACCACATGCTGCAGAGCTACAGCAAGTTCCAGATCGCCACCTGGGGCTCCCTCATCGTCCACGAACTGATCTATTTCCTCTTCTGTCTGCCTGGATTTATCTTTCAGTTCCTCCCTTTCATGCAGAAGTATAAGATCCAACCAGATAAACCAGAGACGTGGGAGAAACAGTGGAAGTGCTTTAAGATGCTGCTGTTTAATCACTTTTGCATCCAGCTACCGCTCATCTGCGGGACGTATTACTTTACTGAGTTCTTCAGCATTCCTTATGACTGGGACTCCATGCCTCGCTGGCCCTTTATATTGGCCCAGTGTTTTGGTTGTGCAGTGATTGAAGACACGTGGCATTACTTCCTCCACCGAGCCCTGCATCATCGCAGAATCtacaaatacattcataaagtCCATCATGACTTCACTGCTCCATTTGGCATGCAGGCAGAATATGCCCACCCCGCTGAGACTCTGATTCTGGGGGCTGgattctttattggcatcatGGTCTTCTGCAATCATATGGTTTTGCTCTGGGCTTGGGTCGCCTTCCGGCTTCTTGAAACCATCGACGTTCACAGCGGTTACGACATTCCTCTGAACCCCCTACATCTGATTCCATTCTACGCCGGAGCTCGTTTCCATGACTTCCACCACATGAATTTTGTGGGCAACTATGGATCTACTTTCACCTGGTGGGACAAACTCTTCAACACCGATTCCCAATTTAAGAAGCATTACTCATTTCATAAAGCTGTGAAGAGCGACTGATTGAGGAAGATCACCGTCACCCAGAGCGATCTATCTCTCTTGTTGGACTCTTGTGTGGGCTCCGCTTGGtctgatgcttttttttgcatcgCCTCCTGCTGCACACACCGActgtaaagtatttaaaatcaGACTGAATGGATTTAAATGAATGCCAGCTTCTTACAGCAACGTGCctttgaaaagagaaaaaaaaaacacaccccgCTGTTATTATTAGACCACTGGTACTCCAAAGGACTGTTTGGACTTCAGCCTGTGTTCtcaattattataaacattcaTCTGTTTCAAgtaataatgacattattgCTCAAAAGCACTTTACTTTCACATAAACAAAGATGGAATGttataaatggttatttttgtaatgccttatttttctttttcttttgctttgttgCCTTACCTGATTTTTTGCTCAGTTTCTGTAAAGATTTTGTAACTTCCACAGGTACCACCTATAGCATATAGATGTGCCTTGGAAAGGATTTGTGGGgaacaatgattaaaaaaacaaaacaaaacacttttagagggagaaaaaaactCCCAAACATAGAtctcaaaatgtgttttcattccGTATTCACATTCACTGATGAAGTCAAATGTTGCATATGAGGTGagatatacatattaaatacatgaTATTAAAGAATCATGTGATTGCAAAA

Function

symbol description
msmo1 Predicted to enable C-4 methylsterol oxidase activity. Predicted to be involved in sterol biosynthetic process. Predicted to act upstream of or within steroid biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in epidermis; head; lens; and otic vesicle. Orthologous to human MSMO1 (methylsterol monooxygenase 1).

NR:

description
PREDICTED: methylsterol monooxygenase 1 isoform X1

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0016126 sterol biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0000254 C-4 methylsterol oxidase activity molecular_function

KEGG:

id description
K07750 MESO1, ERG25; methylsterol monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243148.1 True 1685 mRNA 0.43 6 10840428 10844345

Neighbor

gene id symbol gene type direction distance location
LOC122347952 chrna7,LOC107748270,LOC107679711,LOC107702399,LOC107686877,LOC107548356,LOC107655813,LOC107709454,LOC107562618 coding upstream 105574 10723316 ~ 10734854 (+)
LOC122347900 mtnr1aa,LOC107591561,LOC107656395,LOC107754134,LOC107702348,LOC107746022 coding upstream 157468 10679587 ~ 10682960 (+)
LOC122347771 cyp4v8,LOC107558204,LOC107754133,LOC107656409,LOC107562739,LOC108415372,LOC106602559 coding upstream 340954 10490262 ~ 10499474 (+)
ankrd37 ankrd37,LOC107754130,LOC107656428,LOC107746026,LOC107702343 coding upstream 428285 10409844 ~ 10412143 (+)
slc25a4 slc25a4,LOC107656452,LOC107562743 coding upstream 438761 10399336 ~ 10401667 (+)
LOC122347755 chrna6,LOC107655806,LOC107548359,LOC107709456,LOC107750436 coding downstream 218267 11062612 ~ 11076698 (+)
LOC122342727 chrnb3a,LOC107562617,LOC107709455,LOC107548357,LOC107655822,LOC107702298,LOC107750476 coding downstream 259792 11104137 ~ 11121875 (+)
LOC122342742 adgrl3.1,LOC107709467,LOC107702411,LOC107671918,LOC108437730 coding downstream 278735 11123080 ~ 11143007 (+)
si:dkey-192k22.2 NA coding downstream 451066 11295411 ~ 11302485 (+)
trnap-agg NA coding downstream 466048 11310393 ~ 11310464 (+)
G2352 NA non-coding upstream 1963 10837625 ~ 10838465 (+)
G2350 klhl2,LOC107591556,LOC107745059,LOC107702385,LOC107655955,LOC107750425,LOC107548347 non-coding upstream 3183 10827685 ~ 10837245 (+)
G2246 LOC107754123,LOC107562734,LOC107746042,LOC107702337,LOC107558191 non-coding upstream 466581 10372962 ~ 10373847 (+)
G2219 NA non-coding upstream 760958 10078885 ~ 10079470 (+)
G2149 NA non-coding upstream 1053267 9784218 ~ 9787161 (+)
G2354 NA non-coding downstream 103774 10948119 ~ 10982967 (+)
G2420 mtnr1aa,LOC107656395,LOC107591561,LOC107702348,LOC107754134 non-coding downstream 356787 11201132 ~ 11201666 (+)
G2430 NA non-coding downstream 466248 11310593 ~ 11315354 (+)
G2449 NA non-coding downstream 494950 11339295 ~ 11341748 (+)
G2454 NA non-coding downstream 506555 11350900 ~ 11351657 (+)
tlr3 tlr3,LOC107754132,LOC107562740,LOC107656973,LOC107746023,LOC107702346 other upstream 350344 10483640 ~ 10490084 (+)
G2253 NA other upstream 442388 10397373 ~ 10398040 (+)
fat1a fat1,fat1a,LOC107656821,LOC107702333 other upstream 505226 10256662 ~ 10335202 (+)
G2230 NA other upstream 594850 10245157 ~ 10245578 (+)
G2125 NA other upstream 1427991 9408405 ~ 9412437 (+)
LOC122347856 cpe,LOC107745061,LOC107548348,LOC107591555,LOC107702282,LOC107750458 other downstream 611 10844956 ~ 10981356 (+)
fbxo10 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107702368,LOC107754157,LOC107591540,LOC107750413 other downstream 867595 11711940 ~ 11724900 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other downstream 929611 11773956 ~ 11783070 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other downstream 993261 11837606 ~ 11844060 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other downstream 1800334 12644679 ~ 12658507 (+)

Expression


Co-expression Network