LOC122354326 (LOC107747702,LOC107684012,LOC107574232,LOC107701181,LOC107737133)


Basic Information

Item Value
gene id LOC122354326
gene name LOC107747702,LOC107684012,LOC107574232,LOC107701181,LOC107737133
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 348517 ~ 350442 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU115515
CTTGATTGCATGCATCTGTTAGCGTGTCATAAGACATGAGGAGCGGAAGCTCTGTAAGCCCCGCCCCTACAGAAGGAGTGTTAATGTTGATTTGCCGTCACCTTGATCTCTGAAGACCGTAGCTTTCACTGTTTCTGAGGATCATATCATCTGGACAGGGATCATGGCCTATCAGTGCAAACTGGCTGAGAAACTGGTCATTCTGAATGATCGGGGTCAAGGAGTGCTGATCAGGATGAACCACATCaaaaaggtATGCACAGACCCAAAACGAAGACCATCAAACCTGACTGACAAAAGCATGGAATCTGCCGTAAAATACATTAACAGAAAATTCCCCAACATTGACATCAGGGGCGGCAGTCAACATCTGAGCAGCATACAGAAGCAGAAGTCAGCCATATTGGAGGGTCTGCACAGTTATTATGAGTCCTTCATGGATGTCATGGAGTTTAGG
>XM_043252499.1
CCCCTACAGAAGGAGTGTTAATGTTGATTTGCCGTCACCTTGATCTCTGAAGACCGTAGCTTTCACTGTTTCTGAGGATCATATCATCTGGACAGGGATCATGGCCTATCAGTGCAAACTGGCTGAGAAACTGGTCATTCTGAATGATCGGGGTCAAGGAGTGCTGATCAGGATGAACCACATCaaaaaggtATGCACAGACCCAAAACGAAGACCATCAAACCTGACTGACAAAAGCATGGAATCTGCCGTAAAATACATTAACAGAAAATTCCCCAACATTGACATCAGGGGCGGCAGTCAACATCTGAGCAGCATACAGAAGCAGAAGTCAGCCATATTGGAGGGTCTGCACAGTTATTATGAGTCCTTCATGGATGTCATGGAGTTTAGGTAA

Function

NR:

description
PREDICTED: nck-associated protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115515 True 457 TUCP 0.46 3 348517 350439
XM_043252499.1 False 397 mRNA 0.45 3 348580 350442

Neighbor

gene id symbol gene type direction distance location
LOC122353958 sarnp,LOC107683632,LOC107696044 coding upstream 66955 280680 ~ 281562 (+)
LOC122353953 LOC107569407,LOC107688685,LOC107569398,LOC107688486 coding upstream 155660 190906 ~ 192857 (+)
LOC122354020 iars,LOC107697556 coding upstream 232016 69645 ~ 116501 (+)
LOC122354142 zgc:172352,LOC107701181,LOC107575329,LOC107747702,LOC107684012 coding downstream 1513 351955 ~ 365169 (+)
si:ch211-159e12.5 NA coding downstream 46749 397191 ~ 403408 (+)
slc11a2 slc11a2,LOC107669929,LOC107561796,LOC107747835,LOC107677945 coding downstream 75038 425480 ~ 438326 (+)
npffl npffl,LOC107747841,LOC107669931,LOC107738884,LOC107677943 coding downstream 89778 440220 ~ 442079 (+)
alas1 alas1 coding downstream 92511 442953 ~ 448514 (+)
G78072 NA non-coding upstream 8841 338836 ~ 339676 (+)
G78045 NA non-coding upstream 19495 184597 ~ 329022 (+)
G78043 NA non-coding upstream 26533 179562 ~ 321984 (+)
G78038 NA non-coding upstream 45299 160750 ~ 303218 (+)
G78061 NA non-coding downstream 177 350619 ~ 350944 (+)
LOC122354311 NA non-coding downstream 17361 367803 ~ 373639 (+)
G78047 NA non-coding downstream 52003 402445 ~ 405473 (+)
LOC122353670 NA non-coding downstream 53010 403452 ~ 404970 (+)
G78081 LOC107747831,LOC107561793,LOC107684010 non-coding downstream 55293 405735 ~ 408404 (+)
G78055 LOC107569407,LOC107569398,LOC107688685,LOC107571108 other upstream 14121 333069 ~ 334396 (+)
LOC122353551 NA other upstream 283369 63006 ~ 65148 (+)
G78083 NA other downstream 58891 409333 ~ 410684 (+)
G78084 NA other downstream 61597 412039 ~ 412753 (+)
iars1 iars,LOC107697556 other downstream 235973 586415 ~ 599371 (+)
atp2b2 atp2b2,LOC107561799,LOC107570616,LOC107746712,LOC102776443,LOC107697566 other downstream 252696 603138 ~ 709490 (+)
atg7 atg7,vgll4,vgll4b,LOC107697561,LOC107750032,LOC107750033,LOC107697562 other downstream 497733 848175 ~ 913799 (+)

Expression


Co-expression Network