iars1 (iars,LOC107697556)


Basic Information

Item Value
gene id iars1
gene name iars,LOC107697556
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 586415 ~ 599371 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU115544
AAACATGAGACTAATCCAGCGTTAAGATGTTTTAAACTCAAATACGAGTCCGTAGTAGCTCTTCCTCCAGTCAAAAAGTGGCGTTTACAAGCTAGACGTCATTCTTCTAGCACTAAAGTGATTCACATCTTGTCATTCACAGAGTTGTGTGATTTGTAATTTTTTCCCATCAGGAGCTGAATGTCCGCCAGCTCACTCTGTCCACTGACAAGGACAAATATGGCATTCGTCTGCGAGCTGAACCCGATCACATGGTGCTGGGCAAACGGCTGAAAGGGGCATTTAAATCCGTGACTGCTTCCATCAAAGAGCTGAAGAGTGAAGAGCTGGAGATCTTCCAGAGGACAGGGTCCATCGTGGTGGACGGTCACGAGCTGCTGGAGGACGACCTGCGTCTGATGTACAGCTTCGATCAGAGCTCAGGAACGCCGGCTCAGTACGAGGCTCACTCGGACGCTCAGGTGCTGGTTCTTCTGGACGTCACGCCCGATCAGGCCATGCAGGACGAGGGTGTGGCCCGAGAGGTCATCAACCGCATCCAGAAGCTGCGCAAGAAGGGTCACCTGGTCCCGTCGGATGAGATCACGGTGTATTACAGCAGTCAGCCGGCGGGAGAATACCTGGATAAAGTGATCCGAGCACACACTGACTTCATACTGGCCACCACTAAAGCTCCTCTCAAGCCCTATCCTGTGGCCCAGAGCTCCAGCGTGATCGTCCAGGAGAAAACACAGctcAAGGGCTCAGACCTGGACTTGACCATCGTTAGAGGTCCGGCGTCTCAGGCGCCTCTGACCTCCGCCGCCTGCGCCTTCGTCAACCTCA
>TU115545
GCTGACGCTGGGCTCTGTTTCAGTACCCGCTGAAGGAGGTGGTGGTGATCCATCAGGACCCAGAGGCGCTCAGAGACATCCAGTCCCTGCAGAAAGTACATCCTGGAGGAGCTGAATGTCCGCCAGCTCACTCTGTCCACTGACAAGGACAAATATGGCATTCGTCTGCGAGCTGAACCCGATCACATGGTGCTGGGCAAACGGCTGAAAGGGGCATTTAAATCCGTGACTGCTTCCATCAAAGAGCTGAAGAGTGAAGAGCTGGAGATCTTCCAGAGGACAGGGTCCATCGTGGTGGACGGTCACGAGCTGCTGGAGGACGACCTGCGTCTGATGTACAGCTTCGATCAGAGCTCAGGAACGCCGGCTCAGTACGAGGCTCACTCGGACGCTCAGGTGCTGGTTCTTCTGGACGTCACGCCCGATCAGGCCATGCAGGACGAGGGTGTGGCCCGAGAGGTCATCAACCGCATCCAGAAGCTGCGCAAGAAGGGTCACCTGGTCCCGTCGGATGAGATCACGGTGTATTACAGCAGTCAGCCGGCGGGAGAATACCTGGATAAAGTGATCCGAGCACACACTGACTTCATACTGGCCACCACTAAAGCTCCTCTCAAGCCCTATCCTGTGGCCCAGAGCTCCAGCGTGATCGTCCAGGAGAAAACACAGctcAAGGGCTCAGACCTGGACTTGACCATCGTTAGAGGTCCGGCGTCTCAGGCGCCTCTGACCTCCGCCGCCTGCGCCTTCGTCAACCTCA
>XM_043252500.1
ATGGAGCCTGTTTTTGGTCTCAGGCTCCTTTCCACGCCGTTCATAAACGGGGCTGATGTACACAGAACCCCTGCGTCATCTGATCGACCGGCGTCGGTGGAGAAGGGCGGGAGCATCACTACCTCATGCTGCCTCATCGCGCTCGAAGGCGCCGTGTCTCGGATGCAGTCGGTCCTTCGAGAGCTGGGCCGTGTGATCCGGGACAGGAAGACTCTGCGTGTGATGCTGATCTGCTGACGCTGGGCTCTGTTTCAGTACCCGCTGAAGGAGGTGGTGGTGATCCATCAGGACCCAGAGGCGCTCAGAGACATCCAGTCCCTGCAGAAAAAAGTAAAAGTGGAACTGAATGTCCGCCAGCTCACTCTGTCCACTGACAAGGACAAATATGGCATTCGTCTGCGAGCTGAACCCGATCACATGGTGCTGGGCAAACGGCTGAAAGGGGCATTTAAATCCGTGACTGCTTCCATCAAAGAGCTGAAGAGTGAAGAGCTGGAGATCTTCCAGAGGACAGGGTCCATCGTGGTGGACGGTCACGAGCTGCTGGAGGACGACCTGCGTCTGATGTACAGCTTCGATCAGAGCTCAGGAACGCCGGCTCAGTACGAGGCTCACTCGGACGCTCAGGTGCTGGTTCTTCTGGACGTCACGCCCGATCAGGCCATGCAGGACGAGGGTGTGGCCCGAGAGGTCATCAACCGCATCCAGAAGCTGCGCAAGAAGGGTCACCTGGTCCCGTCGGATGAGATCACGGTGTATTACAGCAGTCAGCCGGCGGGAGAATACCTGGATAAAGTGATCCGAGCACACACTGACTTCATACTGGCCACCACTAAAGCTCCTCTCAAGCCCTATCCTGTGGCCCAGAGCTCCAGCGTGATCGTCCAGGAGAAAACACAGctcAAGGGCTCAGACCTGGACTTGACCATCGTTAGAGGTCCGGCGTCTCAGGCGCCTCTGACCTCCGCCGCCTGCGCCTTCGTCAACCTCAGGGTCACTCTCAGGACAAACAGCAAGGTCAGGGTGATCCTGCTGGAGAACCCCAGGGGTGACGACACGCTGGGCGTGGAGCGGCTCAAGAGCGTCTGCTGTAGTGTGTTCGGACTCAACGGTGCACCTGTGACCATATTCAGCGGGAGGACAGCGCTGACCGCTGGGACTGACCTGATGTCCCTGAGCGGGAAAACGCTGACGGTGACCTCGGGTTCGAGTCCCGCAGACGTGAGCGGCTCCGACCCTCCTCTGTGTCCGTATGTGAACCTGCAGCTCGTGAACACCGGAGAAGTGGCCACGCTGCTCTTGATGAACCCAGTGGGGAAGAACGCCTTGCTCTTCCCCGATCTGCTGCGAGAAGCGGCTAAAGTCTTCGGCCTGAGAGGAAGGAAGCTGCGGCTGTACCTGAACGAGGAGCTGACAGACGAGCTGGAGGCGTCTTCTCTGCACTCTCTGAACACCAAGACCCTCTACGTGAAGGTTCTTCCTACAACAGCAGAAGCTTAACCAGACCAGACCTGCGTCTGATGAAGATCTGATCCGGATCATGTTTGGTGTTTGTAATGGAAACAGGGAAGGTCAAATAACTCAGATTTCATGTATGTTGGTTGATCAAGTAAAGTTTATAACTGGATCTGTACTCTGTGGGTTTCTGTTGGGAAGCTTTGAATAAAACTTGAGATGCAGGTAAAA

Function

symbol description
iars Enables isoleucine-tRNA ligase activity. Involved in isoleucyl-tRNA aminoacylation. Part of aminoacyl-tRNA synthetase multienzyme complex. Is expressed in several structures, including alimentary system; nervous system; respiratory system; sensory organ; and urinary system. Orthologous to human IARS1 (isoleucyl-tRNA synthetase 1).

NR:

description
isoleucine--tRNA ligase, cytoplasmic

GO:

id name namespace
GO:0006428 isoleucyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004822 isoleucine-tRNA ligase activity molecular_function
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115544 False 825 TUCP 0.54 5 591328 595328
TU115545 False 760 TUCP 0.58 6 587984 595328
XM_043252500.1 True 1686 mRNA 0.56 14 586415 599371

Neighbor

gene id symbol gene type direction distance location
dusp7 dusp7,LOC107697567,LOC107677944,LOC107712495 coding upstream 79776 497894 ~ 506639 (+)
poc1a poc1a,LOC108424582,LOC107747840 coding upstream 92714 456952 ~ 493701 (+)
LOC122354000 NA coding upstream 130343 453562 ~ 456072 (+)
alas1 alas1 coding upstream 137901 442953 ~ 448514 (+)
npffl npffl,LOC107747841,LOC107669931,LOC107738884,LOC107677943 coding upstream 144336 440220 ~ 442079 (+)
slc6a11b slc6a11,LOC107750026,LOC107561801,LOC107697565 coding downstream 122439 721810 ~ 741292 (+)
slc6a1b slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 coding downstream 167917 767288 ~ 775904 (+)
hrh1 hrh1,LOC107697554,LOC107750035,LOC107570335,LOC107576492 coding downstream 242261 841632 ~ 845908 (+)
syn2b syn2,syn2b,LOC107758022,LOC107742035,LOC107667867 coding downstream 343420 942791 ~ 1001714 (+)
pparg pparg,LOC107571218,LOC107742034,LOC107667870 coding downstream 403872 1003243 ~ 1029217 (+)
G78089 NA non-coding upstream 161337 424386 ~ 425078 (+)
G78067 cyp27b1 non-coding upstream 174990 270996 ~ 411425 (+)
G78081 LOC107747831,LOC107561793,LOC107684010 non-coding upstream 178011 405735 ~ 408404 (+)
G78047 NA non-coding upstream 180942 402445 ~ 405473 (+)
LOC122353670 NA non-coding upstream 181445 403452 ~ 404970 (+)
LOC122353680 NA non-coding downstream 471703 1071074 ~ 1074580 (+)
G78370 NA non-coding downstream 595853 1195224 ~ 1195463 (+)
G78380 NA non-coding downstream 617853 1217224 ~ 1222835 (+)
G78400 LOC107747473,LOC107550334,LOC107654802 non-coding downstream 677144 1276515 ~ 1277127 (+)
G78455 NA non-coding downstream 823362 1422733 ~ 1425764 (+)
G78084 NA other upstream 173662 412039 ~ 412753 (+)
G78083 NA other upstream 175731 409333 ~ 410684 (+)
LOC122354326 LOC107747702,LOC107684012,LOC107574232,LOC107701181,LOC107737133 other upstream 235973 348517 ~ 350442 (+)
G78055 LOC107569407,LOC107569398,LOC107688685,LOC107571108 other upstream 252019 333069 ~ 334396 (+)
LOC122353551 NA other upstream 521267 63006 ~ 65148 (+)
atp2b2 atp2b2,LOC107561799,LOC107570616,LOC107746712,LOC102776443,LOC107697566 other downstream 3767 603138 ~ 709490 (+)
atg7 atg7,vgll4,vgll4b,LOC107697561,LOC107750032,LOC107750033,LOC107697562 other downstream 248804 848175 ~ 913799 (+)
tsen2 tsen2 other downstream 435038 1034409 ~ 1040239 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other downstream 475336 1074707 ~ 1077399 (+)
LOC122353696 LOC107670931,LOC107551313 other downstream 587495 1186866 ~ 1191721 (+)

Expression


Co-expression Network