G78479


Basic Information

Item Value
gene id G78479
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1513879 ~ 1514178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116134
CAAAAAGGTTTTTTCAAAATCTGCCAACtttgcattatttcatttattaatttaggcATGTCAGTTCCAAGAAGTCCAAGAAGGTAAAGATCTTAAATGGGTCACGATAGTTGGTTGACAGGCCTGTCTTACCTTAGACCCGCCCTTGTTGGATGCAATAATGAATACAGCAGTCGGCATTTCTTCCTGACATCTGAGctgctgaaaacaaaaaggatTAACGTTACTTTCATTTTGAAGGGAATGTGCAGAACCCCGATCTGCCTATAAATGTATCTATGTTCGTACAAATCATTTGTG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0031497 chromatin assembly biological_process
GO:0048468 cell development biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0071103 DNA conformation change biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116134 True 300 lncRNA 0.38 1 1513879 1514178

Neighbor

gene id symbol gene type direction distance location
lrp1aa LOC107654787,LOC106565466 coding upstream 99080 1308673 ~ 1414799 (+)
LOC122354215 LOC107654785 coding upstream 213080 1291107 ~ 1300799 (+)
dtx3l2.2 LOC107654785 coding upstream 223675 1285110 ~ 1290204 (+)
mybl2b mybl2,mybl2b,LOC107654799,LOC107670940 coding upstream 228926 1277780 ~ 1284953 (+)
ift52 ift52,LOC107730620 coding upstream 237866 1270083 ~ 1276013 (+)
hoxc13b NA coding downstream 21849 1536027 ~ 1538014 (+)
hoxc6b LOC107551320,LOC107707362,LOC107660782 coding downstream 29444 1543622 ~ 1544764 (+)
lima1b LOC107707364,LOC107687370,LOC107754562,LOC107551335 coding downstream 87529 1601707 ~ 1618526 (+)
igfbp6a LOC107718979,LOC107687374,LOC107696018,LOC107730876,LOC107557535 coding downstream 117649 1631827 ~ 1633704 (+)
pip4k2cb pip4k2cb,LOC107730889,LOC107557542 coding downstream 121709 1635887 ~ 1643236 (+)
G78468 NA non-coding upstream 31730 1479174 ~ 1482149 (+)
G78467 NA non-coding upstream 42495 1469668 ~ 1471384 (+)
G78455 NA non-coding upstream 88115 1422733 ~ 1425764 (+)
G78400 LOC107747473,LOC107550334,LOC107654802 non-coding upstream 236752 1276515 ~ 1277127 (+)
G78380 NA non-coding upstream 291044 1217224 ~ 1222835 (+)
G78471 LOC107551319 non-coding downstream 7798 1521976 ~ 1524078 (+)
G78472 LOC107557538,LOC107681486,LOC107707358,LOC107551319 non-coding downstream 10169 1524347 ~ 1529157 (+)
G78484 NA non-coding downstream 44682 1558860 ~ 1562656 (+)
G78490 NA non-coding downstream 58416 1572594 ~ 1575125 (+)
G78517 NA non-coding downstream 154844 1669022 ~ 1669695 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other upstream 64919 1419520 ~ 1448960 (+)
LOC122353696 LOC107670931,LOC107551313 other upstream 322158 1186866 ~ 1191721 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other upstream 436480 1074707 ~ 1077399 (+)
tsen2 tsen2 other upstream 473640 1034409 ~ 1040239 (+)
atg7 atg7,vgll4,vgll4b,LOC107697561,LOC107750032,LOC107750033,LOC107697562 other upstream 600080 848175 ~ 913799 (+)
G78500 NA other downstream 76566 1590744 ~ 1593125 (+)
G78506 inpp1,LOC107737355,LOC107683640,LOC107730897 other downstream 130453 1644631 ~ 1726097 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other downstream 164048 1678226 ~ 1681200 (+)
G78763 NA other downstream 1163957 2678135 ~ 2680142 (+)
G78790 NA other downstream 1311361 2825539 ~ 2826794 (+)

Expression


Co-expression Network