G78652 (LOC107550538,LOC107697642)


Basic Information

Item Value
gene id G78652
gene name LOC107550538,LOC107697642
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1898733 ~ 1899063 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116417
aaatatatatatatatatatatatatatatTTTTGAGTGTATGTTATTGATGACCACAGACCTGGGGAGGAGGGATTCCCCCTGCTCCCTCGGGGCAGTCCGGAAGCATCCTGCGGATATCCTCAGTACTACACTCACAGTCGGGGGACGGCTTCTCTACAGTCCAGTTGCCTTTATGAAGGAGCTGCCACATGCTGTAGGGAATCTGTGGCCGAACAAACTTTGTTTCAGCTTCCTGTAAACAGTCAGTGTCTCTGAAAAAGCACACAATTAAGCGCCAC

Function

NR:

description
PREDICTED: ATP-binding cassette sub-family A member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116417 True 281 lncRNA 0.46 2 1898733 1899063

Neighbor

gene id symbol gene type direction distance location
LOC122354697 NA coding upstream 20606 1878021 ~ 1878127 (+)
trnas-gcu_27 NA coding upstream 21819 1876831 ~ 1876914 (+)
trnap-agg_19 NA coding upstream 22044 1876619 ~ 1876689 (+)
trnaq-cug_16 NA coding upstream 22467 1876195 ~ 1876266 (+)
trnas-gcu_26 NA coding upstream 23023 1875629 ~ 1875710 (+)
odad1 LOC107699332,LOC107592901,LOC107750999,LOC107752162,LOC107654176,LOC107550522 coding downstream 44599 1943662 ~ 1949355 (+)
fhit fhit,LOC107699359,LOC107654179 coding downstream 281400 2180463 ~ 2417458 (+)
si:ch211-236d3.4 si:ch211-236d3.4,LOC107570538,LOC107699358,LOC107706914,LOC107724804,LOC107703113 coding downstream 767445 2666508 ~ 2676482 (+)
ccdc3b ccdc3b,LOC107706913,LOC107699329,LOC107570539,LOC105912203,LOC108435991,LOC106565857 coding downstream 783643 2682706 ~ 2693039 (+)
LOC122354390 adnpa,LOC107655053,LOC107563106,LOC107727745,LOC107685678,LOC107577312 coding downstream 900993 2800056 ~ 2805587 (+)
G78625 NA non-coding upstream 96420 1801351 ~ 1802313 (+)
G78540 NA non-coding upstream 132144 1766371 ~ 1766589 (+)
G78517 NA non-coding upstream 229038 1669022 ~ 1669695 (+)
G78490 NA non-coding upstream 323608 1572594 ~ 1575125 (+)
G78484 NA non-coding upstream 336077 1558860 ~ 1562656 (+)
G78674 NA non-coding downstream 37797 1936860 ~ 1939086 (+)
G78757 NA non-coding downstream 589151 2488214 ~ 2488553 (+)
G78772 NA non-coding downstream 801332 2700395 ~ 2700703 (+)
G78784 NA non-coding downstream 913314 2812377 ~ 2813282 (+)
G78797 NA non-coding downstream 1102056 3001119 ~ 3002991 (+)
G78506 inpp1,LOC107737355,LOC107683640,LOC107730897 other upstream 172636 1644631 ~ 1726097 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other upstream 217533 1678226 ~ 1681200 (+)
G78500 NA other upstream 305608 1590744 ~ 1593125 (+)
rargb LOC107730622,LOC107681487,LOC107551317,LOC107681495,LOC107754558,LOC107557540,LOC108424631,LOC105907526 other upstream 380770 1485707 ~ 1517963 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other upstream 449773 1419520 ~ 1448960 (+)
G78763 NA other downstream 779072 2678135 ~ 2680142 (+)
G78790 NA other downstream 926476 2825539 ~ 2826794 (+)
camk2n1 si:dkey-33m11.6,LOC107572850,LOC107680422,LOC107555994,LOC107751034,LOC107714486,LOC107699327 other downstream 1371136 3270199 ~ 3272619 (+)
LOC122353713 LOC107714487,LOC107555999 other downstream 1459147 3358210 ~ 3361658 (+)
tmem167b tmem167b,LOC107592590,LOC107555997,LOC107699326 other downstream 1487195 3386258 ~ 3391229 (+)

Expression


Co-expression Network