ptgfr (ptgfr,LOC107753832,LOC107562064,LOC107655972,LOC107665835)


Basic Information

Item Value
gene id ptgfr
gene name ptgfr,LOC107753832,LOC107562064,LOC107655972,LOC107665835
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 14465892 ~ 14468603 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU121002
GCCATATATGCGGGATATATAAGAGAGCAAGGGTGAGCGGAACCAGTTTTTACTTGCGTGTGCATAAATTTGCATGTGGCGCATGCATGTGATTGATCACTTTATGTCTAAAATAAACCGCTTTTCAAAATGCGTGCTCAACTTGATGCAGCtgactatgtaaaaaaaacggTCAAAAGTAAACCTGAACATTTTCAccaaataaaa
>XM_043252721.1
TCATGCTTTATAATGGTTCAGCTAATGCCGGATGCTCGGTGTCGGGCGATGTGTGTAACGGGAGCTGTACTAAAAAGGAAGTTTCTGTGACCCCGACTGCCATCTCGATGACGGTGGGCATCGTTTCCAACACCCTGGCCCTCTTCATCTTGATCAAAGCCTACCGCAGGTTCAGGCTGAAGTCGAAAGCAGCCTTCCTCATGTTTGCTAGCGGCCTGGTGGTGACTGACTTCTTGGGACACCTGATCAACGGCTCTCTGGCTCTCTACGTGTACGCCTCCCAAAAAGACTGGGAGACGTTTGACCCTCACAAGTCTCTGTGCGACTTTTTTGGCGTTTCCATGGCTTTCTTTGGCTTGACTCCTCTGCTGCTCGGGGGCTTGATGGCGGTGGAGCGCTGTTTCGGAGTGACCCGTCCTCTCTTCCACGTCACAGTGCAGGGGGCCCATCACGTCAGGAGGCTGTTGGGTTTGACCTGGCTGCTGGGTCTGCTGGTGGCCCTGCTGCCCCTCCTGCTTCAGAGGTCGTATCAGGTGCAGCGCTCCCGGAGCTGGTGTTTCTTCCACCTGCAGGGCCCGCGCGATTGGCTGGACGTGCTCCTGCTGATACTGTTCTCTGCGCTGGGTTTGCTGGCTCTCCTCGTCTCATTAGTGTGCAATACAGTGACTTTTCTCACTCTCCTGCGGCGCAGGGTACAACTTGACCGAGATCATCATCGCCACAGCCGTAACACATCTCACCATTGTGAGATGGTCTGCCAGCTTTTGGCAATCATGCTGGTCTCCTGTGTGTGCTGGGGACCAATTTTGATAACGGGCATCATCTTCAGCCTGCAGGACCACGGTGAGGATCAGACATCGTACGCTCATATGCTCCTGGTTGTGCGCATGGCGACCTGGAACCAGATCCTCGATCCCTGGGTGTACATCCTCCTGCGCAAAGCTGTTCTGAGGAGACTTTTTCAGGTGGCACTGAGACTTTGCAGTCCTCACTCCGAATTTCGCTTCCAGTGGCAGGGCAGCATCGAGGCCAGCAGCTCAGTGATCAGCAGACCAGACTTCATCTGCCTGCATGGACCTTACCTTCCAGACACTGCCATCCAGTCAGACGACCTCCGCTGACGGGGGATATGCATTACACTGGATAAGAGGCCGTGCCATGTCTCTTGCATTAATCACAGACCTGTTTTCATTAGTATACGTACAACGTGCAAgaatcaaatacaaaattagTGCTTTTAATCGATTTGTTCAAATAAGTGGGGTATATAGATCcttttgaagcttttttttcatctattgCTTCAAGCATGTTTTGAGactttatgtgaatatattttaaaagacgATCGTGGTTAGATGTTTTAAACATCTCAGAACATGTCTCATAGCGGTacgcacacacatttaaaatgatttttgtattttatggtATCTGTAGATTGGAGCATTTTATATGAAAGCTTCTAGAATTAAATTTTGCTGCTGTAAAGAGCTGTTTAAATCCGTAATCTGTCAATGTCGAAGCactacaaaatataaacatgtacaACTAGCTCATCTTAATGTATATGTTCGCTTGTCGCGTGGCCATATATGCGGGATATATAAGAGAGCAAGGGTGAGCGGAACCAGTTTTTACTTGCGTGTGCATAAATTTGCATGTGGCGCATGCATGTGATTGATCACTTTATGTCTAAAATAAACCGCTTTTCAAAATGCGTGCTCAACTTGATGCAGCtgactatgtaaaaaaaacggTCAAAAGTAAACCTGAACATTTTCAccaa

Function

symbol description
ptgfr Enables prostaglandin F receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway; inflammatory response; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Orthologous to human PTGFR (prostaglandin F receptor).

NR:

description
prostaglandin F2-alpha receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004958 prostaglandin F receptor activity molecular_function
GO:0004960 thromboxane receptor activity molecular_function

KEGG:

id description
K04262 PTGFR; prostaglandin F receptor

RNA

RNA id representative length rna type GC content exon number start site end site
TU121002 False 207 lncRNA 0.38 1 14468397 14468603
XM_043252721.1 True 1789 mRNA 0.48 2 14465892 14468597

Neighbor

gene id symbol gene type direction distance location
LOC122353764 LOC107723054 coding upstream 26082 14417383 ~ 14439810 (+)
zgpat zgpat coding upstream 50589 14410061 ~ 14415303 (+)
rtel1 rtel1,LOC107723052,LOC107753877,LOC107665833,LOC107562060 coding upstream 56653 14393900 ~ 14409239 (+)
rbb4l rbb4l,rbbp7,LOC107753839,LOC107562083,LOC107656110,LOC108438657,LOC105893332,LOC103023991,LOC107730765 coding upstream 84359 14373890 ~ 14381533 (+)
ap1s2 ap1s2,LOC105893284,LOC107602789,LOC107665854,LOC107732206,LOC108438658,LOC107656112 coding upstream 98717 14363575 ~ 14367175 (+)
btf3l4 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107655993,LOC107562065 coding downstream 304 14468907 ~ 14472097 (+)
mob3c mob3c,LOC107576341,LOC107572948,LOC107753835,LOC107723061,LOC107656107,LOC108270829 coding downstream 45092 14513695 ~ 14519419 (+)
mknk1 mknk1,LOC107753831,LOC107723060,LOC107655971,LOC107602795 coding downstream 51307 14519910 ~ 14527527 (+)
LOC122354141 NA coding downstream 59065 14527668 ~ 14532247 (+)
atp5f1b atp5b,LOC102199207,LOC100693141 coding downstream 64137 14532740 ~ 14536364 (+)
G81750 NA non-coding upstream 14146 14451339 ~ 14451746 (+)
G81749 NA non-coding upstream 15658 14450030 ~ 14450234 (+)
G81732 NA non-coding upstream 93522 14371306 ~ 14372370 (+)
G81726 comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 non-coding upstream 156045 14267605 ~ 14309847 (+)
G81724 NA non-coding upstream 331923 14125832 ~ 14133969 (+)
G81752 NA non-coding downstream 16422 14485025 ~ 14485263 (+)
G81736 NA non-coding downstream 22102 14490705 ~ 14493029 (+)
G81753 NA non-coding downstream 24633 14493236 ~ 14497040 (+)
G81762 NA non-coding downstream 68010 14536613 ~ 14618947 (+)
G81763 NA non-coding downstream 68724 14537327 ~ 14537789 (+)
LOC122353763 NA other upstream 111187 14352300 ~ 14354705 (+)
G81717 NA other upstream 159315 13887333 ~ 14306577 (+)
G81722 NA other upstream 435791 14021790 ~ 14030101 (+)
LOC122353915 vmac,LOC107680554,LOC107685109,LOC107757942 other upstream 760917 13701235 ~ 13704975 (+)
LOC122353908 vmac,LOC107680554,LOC107757942,LOC107685109 other upstream 1000476 13460464 ~ 13465416 (+)
zfyve9b zfyve9b,LOC107753830,LOC107656105,LOC107562066,LOC107723065,LOC107665831 other downstream 3963 14472566 ~ 14488809 (+)
palm1a palm,palm1a,LOC107656088,LOC107674557,LOC107723854,LOC107753814,LOC107593145 other downstream 355804 14824407 ~ 14855872 (+)
G82072 LOC107753843,LOC107680456,LOC107562070,LOC107718864,LOC107563489 other downstream 812376 15280979 ~ 15282157 (+)
LOC122354546 abcc10,LOC107753844,LOC107680503,LOC107674523,LOC107718869,LOC107680501 other downstream 838049 15306652 ~ 15331632 (+)
hap1 si:dkey-28e7.3,LOC107680538,LOC107674537,LOC107718874,LOC107753848,LOC107564818,LOC107562051 other downstream 920463 15389066 ~ 15400192 (+)

Expression


Co-expression Network