G82024 (slc39a3)


Basic Information

Item Value
gene id G82024
gene name slc39a3
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15126647 ~ 15129620 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU121433
GGAAAATCactttattaaatagaaaaattaaagatgatcgattattacattttaaaaaggaatttCGCAACACTGAGATGCTAAATCTTATTGACACAAGGAAAAGAGTACAGGCAGGAATTGGCTACAGATTGAGATTAAAAATCTTAGATTAAGCCTCCACATCAGAATCCAACCTCGGATGCAAGATCCTGTCTGAAAATATCTGGTACCCAAAACCTGTTAGCAGTAGGTTTTGTCCCAAAATCAATGTTTCACTACCCAAAGCTGTATTAACAGTCTTCTCTCGGCAGGCACAGAAAGCCAGTGGGAGCAGAAAAAAAGGAGATGAAGTGACGGTAAATGCGTTTCATTCTTTTCAATGCTCTGTCCAAACATTATTACCACAAGCAATATCAATGGAAGATTACTGCTCCACAAAAATGcccattaataaaacaaaacctctGTCTTATCTTTAACATGTCTGCGAGGAAAACAACacaacagattaaaaaaactcaaatcatATAAAATGACTGATCAATGAATTAAGCgtatttgatttataaataataaagcagaATAATAAACTCACCAAACGATTAAAaacgcaaagaaaaaaaaaacgaacgtGTGGCAACACGCACGGGTTGCCACAAAGAGCCCACAAACACCTAAACAATGAAAAGACTAAGAATCTCCCTGATAGGCTTAAAAGTATATCACCGTGAAAGTTCATAAAGCTGTAAAAAACACAGGAGTACAAAACAAAGGTTGTTCAAACACGAGGAATACAAGGTTGTTACGTCTTAACTTCCTGAGGCTCACTCTGGGCAATAGCAATGCATGTCGTTTTCATAATGCGGGATTCAGCATTTCtcttcatttatatatttatgaatacaaAATATTCATCACACTCAAACTGAGCCTAGCAGCCAAAATCAAATATAGCTTTAAAGTAACAATGAGCAATCTGAATTATGCATAAAACTATACCAGCAGATGAAACGGTCAACCAGCAAACCCAGCTTGCTCAAATACATTCACCCCGTTCTGCTTCAAAACACCATCTGTCTGTCAGCTCGCAGCCAAAACTGAGTCTCTGTCTAGATCGGGAGTATTTCCCCCCCAGTGACACTTGTGTCAAGTAACCGAAACATGTGACGGTCAGACTGAACTCAACTGCATTACGATGAATGTGAATCTAAATCAGGAACCTCACCGCAGTTCACATCCTACGTGTGCATTCAGCTAATAGTATCTACAAGCAAATCCTTCAAAACAGCCTTTGTAGTACTGGTACATATTGACTGTGATATTTACAtaaaggataaataaaaaataaataaaaaaactagcCTGAAATGTATCAGATGATTTGAGCAAGACGTAAAAGGGTATAATTCAAAAGAATGAGGCCCAGGGTGTTCATTCACGTGAGATGCTAATTAAAGGAATCgtttaccccaaaattaaaattattctgTGATTTACCCGCCATCCTGGGTgtatatggctttcttctttaAGATTAATACAATTGGATTTCTACTGAAATATGACCTGGCtcaagctttataatggcagtgaatagTGGCCAAGATTTAGAAGTACTCCGTCATAAACAGTACTCCACATATACACcttaggatggcttgagggaaATTCAAGGGgtcactttcatttttggctgaacccTTCCTATTaacactatttttaatattatgattacctcattattttttcatttctagttagccatttaaatatgcattataattCCTTTGTACTAACTGTACATGTAATATTTGGCCTTAGTACAGTAACAAAACTAAAGTTAGCTTTTGGAAACAATTTTTCTGGACAATATGACACTTAACatattaatcacacacacacacacacacacatacacacacacacacacatatatatatatatataaataaaaataaaggtcaaACAGTTTGAAAACACTTGCTCTCTAAAATACCAAACGTTATTCAGTAGATTTAAAGAAACTGTTGATTATAATGTTTTAGAGATGGTGCTCTAAAAGAGCGGAACagttttttatgttacattttgaaCCCCTTTTACCATTTGATGAAGACAAGTCCTGCTAATACACTGTAGCCCAGAGCAAGAAACAGCACCTTCAGTAGCCTGTCGTGTTTATCCTCCAGCTCTCGTGAAAGGATCTCAAAGAACGTGATGAAGAGGGACGTGCCGGCTGCCAGGCCCTGGAGCACTACTGATAAAATACTTTCCGCCAGGTGCTGGACTGTCTGAATACCCATTCCTATCCCGATGCCCAGAGGAATCATTAGGCTCACTGTTACGGCCAGTTTACTGGCGTCCCGTAAAGAGACGCCCGCCTTGGCTATATTAACCCCCAGAGCCACGGCTGCCAGCGTCTCGTGGATGGCCACTCCAATGAAGAGGGTTCCCAGTTCAGCCCCCTCTTCCTGAAGGCCCAAAGCGAGACCCTCGAACACAGAGTGAGCGGAGAGCGCTAGCACCAGGCTAGCTAACCTCAACGGCCCGGCGTGCGTCAGCTCCGAAGGGTGGAAGTGTCCGTGGTGATGGGAATGGTACTGGTGGTCTCTGGAACCTCGGGCGGGAGCGATGAATGGAGCATCGTTCTCTGAGTCGCTCCCCGCTGCCGAGCCGCCAGCGTTAAAAGTCTCCAGGTCGATAAATGAGGGCTTCTCTTTGCGGAAAGTGAGCACGGCCTGTTCCACAAATACTGTGAGGAAAAACccaatcatcatcatcgtctCTGCCAGAGGATAATGATTGGGAGTTTTTAACGTTTCCAGG
>TU121434
GGAAAATCactttattaaatagaaaaattaaagatgatcgattattacattttaaaaaggaatttCGCAACACTGAGATGCTAAATCTTATTGACACAAGGAAAAGAGTACAGGCAGGAATTGGCTACAGATTGAGATTAAAAATCTTAGATTAAGCCTCCACATCAGAATCCAACCTCGGATGCAAGATCCTGTCTGAAAATATCTGGTACCCAAAACCTGTTAGCAGTAGGTTTTGTCCCAAAATCAATGTTTCACTACCCAAAGCTGTATTAACAGTCTTCTCTCGGCAGGCACAGAAAGCCAGTGGGAGCAGAAAAAAAGGAGATGAAGTGACGGTAAATGCGTTTCATTCTTTTCAATGCTCTGTCCAAACATTATTACCACAAGCAATATCAATGGAAGATTACTGCTCCACAAAAATGcccattaataaaacaaaacctctGTCTTATCTTTAACATGTCTGCGAGGAAAACAACacaacagattaaaaaaactcaaatcatATAAAATGACTGATCAATGAATTAAGCgtatttgatttataaataataaagcagaATAATAAACTCACCAAACGATTAAAaacgcaaagaaaaaaaaaacgaacgtGTGGCAACACGCACGGGTTGCCACAAAGAGCCCACAAACACCTAAACAATGAAAAGACTAAGAATCTCCCTGATAGGCTTAAAAGTATATCACCGTGAAAGTTCATAAAGCTGTAAAAAACACAGGAGTACAAAACAAAGGTTGTTCAAACACGAGGAATACAAGGTTGTTACGTCTTAACTTCCTGAGGCTCACTCTGGGCAATAGCAATGCATGTCGTTTTCATAATGCGGGATTCAGCATTTCtcttcatttatatatttatgaatacaaAATATTCATCACACTCAAACTGAGCCTAGCAGCCAAAATCAAATATAGCTTTAAAGTAACAATGAGCAATCTGAATTATGCATAAAACTATACCAGCAGATGAAACGGTCAACCAGCAAACCCAGCTTGCTCAAATACATTCACCCCGTTCTGCTTCAAAACACCATCTGTCTGTCAGCTCGCAGCCAAAACTGAGTCTCTGTCTAGATCGGGAGTATTTCCCCCCCAGTGACACTTGTGTCAAGTAACCGAAACATGTGACGGTCAGACTGAACTCAACTGCATTACGATGAATGTGAATCTAAATCAGGAACCTCACCGCAGTTCACATCCTACGTGTGCATTCAGCTAATAGTATCTACAAGCAAATCCTTCAAAACAGCCTTTGTAGTACTGGTACATATTGACTGTGATATTTACAtaaaggataaataaaaaataaataaaaaaactagcCTGAAATGTATCAGATGATTTGAGCAAGACGTAAAAGGGTATAATTCAAAAGAATGAGGCCCAGGGTGTTCATTCACGTGAGATGCTAATTAAAGGAATCgtttaccccaaaattaaaattattctgTGATTTACCCGCCATCCTGGGTgtatatggctttcttctttaAGATTAATACAATTGGATTTCTACTGAAATATGACCTGGCtcaagctttataatggcagtgaatagTGGCCAAGATTTAGAAGTACTCCGTCATAAACAGTACTCCACATATACACcttaggatggcttgagggaaATTCAAGGGgtcactttcatttttggctgaacccTTCCTATTaacactatttttaatattatgattacctcattattttttcatttctagttagccatttaaatatgcattataattCCTTTGTACTAACTGTACATGTAATATTTGGCCTTAGTACAGTAACAAAACTAAAGTTAGCTTTTGGAAACAATTTTTCTGGACAATATGACACTTAACatattaatcacacacacacacacacacacatacacacacacacacacatatatatatatatataaataaaaataaaggtcaaACAGTTTGAAAACACTTGCTCTCTAAAATACCAAACGTTATTCAGTAGATTTAAAGAAACTGTTGATTATAATGTTTTAGAGATGGTGCTCTAAAAGAGCGGAACagttttttatgttacattttgaaCCCCTTTTACCATTTGATGAAGACAAGTCCTGCTAATACACTGTAGCCCAGAGCAAGAAACAGCACCTTCAGTAGCCTGTCGTGTTTATCCTCCAGCTCTCGTGAAAGGATCTCAAAGAACGTGATGAAGAGGGACGTGCCGGCTGCCAGGCCCTGGAGCACTACTGATAAAATACTTTCCGCCAGGTGCTGGACTGTCTGAATACCCATTCCTATCCCGATGCCCAGAGGAATCATTAGGCTCACTGTTACGGCCAGTTTACTGGCGTCCCGTAAAGAGACGCCCGCCTTGGCTATATTAACCCCCAGAGCCACGGCTGCCAGCGTCTCGTGGATGGCCACTCCAATGAAGAGGGTTCCCAGTTCAGCCCCCTCTTCCTGAAGGCCCAAAGCGAGACCCTCGAACACAGAGTGAGCGGAGAGCGCTAGCACCAGGCTAGCTAACCTCAACGGCCCGGCGTGCGTCAGCTCCGAAGGGTGGAAGTGTCCGTGGTGATGGGAATGGTACTGGTGGTCTCTGGAACCTCGGGCGGGAGCGATGAATGGAGCATCGTTCTCTGAGTCGCTCCCCGCTGCCGAGCCGCCAGCGTTAAAAGTCTCCAGGTCGATAAATGAGGGCTTCTCTTTGCGGAAAGTGAGCACGGCCTGTTCCACAAATACTGTGAGGAAAAACccaatcatcatcatcgtctCTGCCAGAGGATAATGATTGGGAGTTTTTAACGTTTCCAGGACATCGTCAACCTGAAAGCAAAAAGGTAGGAAGTCAAGGGtctgtaaatgtaaactgtaattaatgatttttcttaaaggggtcatatcatgttactaaaaagaacattattttgtgtatttgatgtTATGCGATTTGTAACAATTTGTTTACCGTTTCTCCTCTA

Function

symbol description
slc39a3 Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within response to zinc ion. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SLC39A3 (solute carrier family 39 member 3).

NR:

description
PREDICTED: zinc transporter ZIP3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121433 False 2808 lncRNA 0.40 1 15126647 15129454
TU121434 True 2974 lncRNA 0.40 1 15126647 15129620

Neighbor

gene id symbol gene type direction distance location
elavl1b hug,LOC107602813,LOC107723845,LOC107674545,LOC107656079,LOC107593135 coding upstream 12546 15108416 ~ 15114101 (+)
si:ch73-60h1.1 si:ch73-60h1.1,LOC107723863,LOC107602811,LOC107674560,LOC107753807,LOC107593134,LOC107656080,LOC103036728,LOC108270791 coding upstream 19831 15091773 ~ 15106816 (+)
LOC122353556 efna2,LOC107674568,LOC107602810,LOC106613575,LOC107753873,LOC106574064,LOC108270832 coding upstream 87312 14928712 ~ 15039335 (+)
fam174c cunh19orf24,LOC107723861,LOC107602809,LOC107656081,LOC107753890,LOC108437278 coding upstream 232049 14891843 ~ 14894598 (+)
ptbp1b ptbp1b,ptbp1,LOC107753809,LOC107723850,LOC107602808,LOC107674525 coding upstream 235160 14875039 ~ 14891487 (+)
LOC122354453 LOC107753800,LOC107655990,LOC107723864,LOC107602815,LOC105898142,LOC103367601 coding downstream 37141 15166761 ~ 15171280 (+)
krt95 LOC107753879,LOC107562057,LOC107746886 coding downstream 57849 15187469 ~ 15190332 (+)
LOC122354562 si:ch211-156l18.7,LOC107753880,LOC107562056 coding downstream 64895 15194515 ~ 15197241 (+)
npepps npepps,LOC107718863,LOC107674532,LOC107753845,LOC107680533 coding downstream 117328 15246948 ~ 15264500 (+)
mrpl45 mrpl45,LOC107753856,LOC107680544 coding downstream 135186 15264806 ~ 15267839 (+)
G82017 NA non-coding upstream 18544 15106911 ~ 15108103 (+)
G81782 NA non-coding upstream 489388 14634108 ~ 14637259 (+)
G81762 NA non-coding upstream 507700 14536613 ~ 14618947 (+)
G81763 NA non-coding upstream 588858 14537327 ~ 14537789 (+)
G81753 NA non-coding upstream 629607 14493236 ~ 14497040 (+)
G82025 NA non-coding downstream 759 15130379 ~ 15130848 (+)
G82031 NA non-coding downstream 28970 15158590 ~ 15158942 (+)
G82032 NA non-coding downstream 34704 15164324 ~ 15164523 (+)
G82055 NA non-coding downstream 68292 15197912 ~ 15202535 (+)
G82060 NA non-coding downstream 106980 15236600 ~ 15241282 (+)
palm1a palm,palm1a,LOC107656088,LOC107674557,LOC107723854,LOC107753814,LOC107593145 other upstream 270775 14824407 ~ 14855872 (+)
zfyve9b zfyve9b,LOC107753830,LOC107656105,LOC107562066,LOC107723065,LOC107665831 other upstream 637838 14472566 ~ 14488809 (+)
ptgfr ptgfr,LOC107753832,LOC107562064,LOC107655972,LOC107665835 other upstream 658044 14465892 ~ 14468603 (+)
LOC122353763 NA other upstream 771942 14352300 ~ 14354705 (+)
G81722 NA other upstream 1096546 14021790 ~ 14030101 (+)
G82072 LOC107753843,LOC107680456,LOC107562070,LOC107718864,LOC107563489 other downstream 151359 15280979 ~ 15282157 (+)
LOC122354546 abcc10,LOC107753844,LOC107680503,LOC107674523,LOC107718869,LOC107680501 other downstream 177032 15306652 ~ 15331632 (+)
hap1 si:dkey-28e7.3,LOC107680538,LOC107674537,LOC107718874,LOC107753848,LOC107564818,LOC107562051 other downstream 259446 15389066 ~ 15400192 (+)
col9a1a col9a1a,LOC107674561,LOC107563512,LOC107753862,LOC107680514,LOC107718896,LOC108438673 other downstream 327262 15456882 ~ 15491776 (+)
G82131 NA other downstream 400973 15530593 ~ 15531490 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G390046 NA non-coding CI01000207 null 270930 ~ 274697 (+)