CI01000000_17267180_17298324 (SLIT3)


Basic Information

Item Value
gene id CI01000000_17267180_17298324
gene name SLIT3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 17267180 ~ 17298324 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_17267180_17298324.mRNA
ATCCTGAGCTATAATCAAATTCGCTGTGTCCCGGTTCATGCATTTGATGGCTTGCGTTCTCTCCGCCTGCTAACCCTCCACGGAAATGACCTTTCAACTATTCCGGAGGGAGCCTTCAGCCACTTGACATCTCTGTCTCATCTGGCTCTAGGTGCGAACCCCCTATACTGTGACTGTGAGCTGCGCTGGTTGTCTCAGTGGGTGAAGGCTGGGTTTAAAGAGCCTGGCATCGCCCGCTGCACTGGACCACCCGACATGGCGGACCGACTGCTGCTTACCACCCCCCTCAATCGCTTCCAGTGCAAGGGTCCAGCAGATTTGAATCTGATGTCCAAGTGCGCCCCCTGTCTGGCGGCTCCCTGTCAGAACAACGGCACATGTGTGAGTGATGTGACAGGCTCCTACCACTGCACCTGCCCTTTCAGCTACAAGGGTCGTAACTGTGAGATTCCCATTAACGCCTGCATCAGCCTGCCGTGTGTTAATGGAGGCACATGCCACCTCACACCTGGACTGGACGGGCAGTACAGCTGTGTGTGTCCACCTGGGTATGAGGGCCAGCAGTGTGAGCTGAATCCTGATGACTGTGAAGACAACGACTGTGAGAATAACTCCACCTGCGTGGACGGCATCAACAACTACACCTGTGTCTGCCCTCCTAACTACAGAGGTGATCTGTGTGAGGAGGTGGTTGACCCCTGTCTGCCTGGGTTTGACCCCTGCCAACACGACTCCAAGTGTGTTCCCCTCAGTAAGGGCTACAGATGTGAATGTTTGCCAGGTTATGTTGGCCAGCAGTGTGAGCAGGATTACAATGACTGTCTGGAGAACAAATGCCAGCATGGGGCAGAGTGTGTCGACGCCATCAATGGATACACATGTGTGTGCAGGGAGGGCTTCAGCGGGTTGTTCTGTGAGAATCCTCCACCAATGGTATTGCTCCAAAAGACGAGTCCATGTGATCAATCTGACTGTCAAAACGGAGCCCAGTGTTTGGTCGTGGAGGGAGAGCCCATGTGCCGTTGTCTACCTGGCTTCTTCGGCATCAAGTGCCATAAAATGGTCACGGTTCACTTCCTCGGCAAAGACACCTACGTAGAGCTCTCCGGCACCAAGATCCGACCACCCATGCACATATCCCTCCAGGTGGCCACAGATAAGGACAATGGCATTCTGTTGTATAAAGAGGACCATGACCCACTCGCCCTAGAGCTGTACCAGGGGCACATTCGCTTGATCTATGATGTTACCAAGTACCCCCCAACCACAGTGTACAGTGTGGAGTCGGTGAATGATGGTCTTTTCCACATGGTGGAAGTGCTGATCCAGAATCAGACCCTGAGTTTGGTGGTGGATAAAGGGGCACCAAAAAGCCTGGGCAAATTGCCCCGCCCTCCTGCTGTGGACCACAACACACAACTCTATATAGGCGGTGTTCCTTCTCTGATTGACACGGTAGGCCTGCGACCGGGTCCAGACCGTCCATTCCAGTCCTTTAATGGCTGTATTCATGATGTACGGCTCAACGGGGAACTCCAAGACCTCGGCGGTGGACTGGCTGGGTTGAAGGGCGTCCTGCCGGGCTGTCACTCCTGCGGCATTTGTGCTCAGGGGGCCTGCAGACAGAGAGGAGAGGCAGGCGTGACCTGCGAGTGTCCCGTCGGCCACAGCGGCCCACTGTGTGAACCGATGACCTCCCAGAAACCCTGTCAGGGCAGCAGGTACACAAACACGCATGTACACAAACACTCACGGTTGTGCTTGTATCAGGCAGTAATACCCTCTCTCTTCCTGTGCAGGTGTGTGCATGGTGTGTGTGTGCCTACAGGCTCCTCGTACAGCTGCTCATGTGCAGATGGATACTCTGGCCAGTACTGTGACAGGCGGGACGAGTCCGCCGCATGCAGGGGGCAGCACTGTGTGCACGGAGAGTGCAGAGCGACAGAGAGTGGAGAGCCGGTTTGCCACTGCCAGCCTGGGTACAGCGGGCCAACCTGTGAAACAGAGCTGACGTGCCAAGGAGAGATGGTTCGCGAGCTGCTCAAGCGTCACATGGGTCATAAAAACTGCACCTCCACCAGTAAAATCCCGCGGGTGGAGTGTCCTCACGCCTGCCACTCGGGCCTGTGCTGCGCCCCCACCAAGAGCCGGAGACGGAAGGTCAGCTTCAAGTGCTCCGACGGATCGTCCTTTTCCGAGGAGATGGAGACCACCTTGGAGTGCGGCTGCACAAAGTGCCCATTG

Function

symbol description
slit3 Predicted to enable Roundabout binding activity and heparin binding activity. Acts upstream of or within central nervous system projection neuron axonogenesis and negative regulation of axon extension. Predicted to be located in extracellular region. Is expressed in several structures, including axial mesoderm; fin; nervous system; pectoral fin bud; and presumptive mesoderm. Orthologous to human SLIT3 (slit guidance ligand 3).

NR:

description
Slit3

GO:

id name namespace
GO:0035385 Roundabout signaling pathway biological_process

KEGG:

id description
K06850 SLIT3; slit 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_17267180_17298324.mRNA True 2244 mRNA 0.56 13 17267180 17298324

Neighbor

gene id symbol gene type direction distance location
CI01000000_17228916_17261506 NA coding upstream 5542 17228745 ~ 17261638 (+)
CI01000000_17226578_17228246 NA coding upstream 38871 17226578 ~ 17228309 (+)
CI01000000_17095875_17098978 NA coding upstream 168202 17095804 ~ 17098978 (+)
CI01000000_16971818_16978284 NA coding upstream 288499 16971499 ~ 16978681 (+)
CI01000000_16922072_16941848 PDE6B, PDE6A coding upstream 324916 16922032 ~ 16942264 (+)
CI01000000_17339270_17345013 CXCL14, CXL14 coding downstream 40946 17339154 ~ 17346200 (+)
CI01000000_17361598_17367002 NA coding downstream 62558 17360882 ~ 17367074 (+)
CI01000000_17388536_17403918 FAM13B coding downstream 89394 17387718 ~ 17405127 (+)
CI01000000_17478377_17481058 NA coding downstream 180053 17478377 ~ 17482171 (+)
CI01000000_17501554_17504867 NA coding downstream 203230 17501554 ~ 17504904 (+)
G11057 NA non-coding upstream 204033 17062923 ~ 17063147 (+)
G11053 NA non-coding upstream 211030 17055911 ~ 17056150 (+)
G11012 NA non-coding upstream 232337 17032576 ~ 17034843 (+)
G11039 NA non-coding upstream 251607 17015340 ~ 17015573 (+)
G11028 NA non-coding upstream 262524 17004402 ~ 17004656 (+)
G11309 NA non-coding downstream 48961 17347285 ~ 17347552 (+)
G11314 NA non-coding downstream 117532 17415856 ~ 17416095 (+)
G11251 NA non-coding downstream 252384 17550708 ~ 17582913 (+)
G11413 NA non-coding downstream 406011 17704335 ~ 17704550 (+)
G11423 NA non-coding downstream 429554 17727878 ~ 17729245 (+)
G10201 NA other upstream 1336618 15930266 ~ 15930562 (+)
G9201 NA other upstream 3032239 14215024 ~ 14234941 (+)
G7522 NA other upstream 5088172 12178369 ~ 12179008 (+)
G7514 NA other upstream 5130172 12136522 ~ 12137008 (+)
G7153 NA other upstream 6021547 11244457 ~ 11245633 (+)
G11465 NA other downstream 585629 17883953 ~ 17887462 (+)
G11521 NA other downstream 734415 18032739 ~ 18164112 (+)
G11801 NA other downstream 1382543 18674116 ~ 18745376 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location