LOC122353958 (sarnp,LOC107683632,LOC107696044)


Basic Information

Item Value
gene id LOC122353958
gene name sarnp,LOC107683632,LOC107696044
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 280680 ~ 281562 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251865.1
tgtactgttcctttaagactgGCACATACCGGTGCAACTTAAGGTGGCATGCGTCTAATTAATGAAAAGTCCCATGCGTTCATTggttgtttcttgttttttcttcctcctacctttcttttttattttaggaagTTCAGCCAAACCGAACGTTGACGTTGAGGTGTTAAAGAAGAGAGCAGAACGTTTCGGCATGAATGTCTCTTCGGTTTCTAAAAAGATCGAGGATGATGAAAAGCTTAAGAAGAGGAAGGAAAGATTTGGCATCGTCACGAGCGCAGCGGCCGCTGGAGCCAATGATTCGGAGGCAAAGAAGCGAAAACGTGCTGAGCGGTTtggaaatgtataaaacatgGATCTTAccctttttgtactttttatgaagttttttttaagtgttctttGCGGTTCATTTTCTGATAAGCTTGTAATCCCTGTAGTGCCATGGTTGTTTATctgatatttacattaaaagtacCCCAGTTCCTTCTA

Function

symbol description
sarnp Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in nucleus. Orthologous to human SARNP (SAP domain containing ribonucleoprotein).

NR:

description
PREDICTED: SAP domain-containing ribonucleoprotein isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251865.1 True 492 mRNA 0.40 4 280680 281562

Neighbor

gene id symbol gene type direction distance location
LOC122353953 LOC107569407,LOC107688685,LOC107569398,LOC107688486 coding upstream 87823 190906 ~ 192857 (+)
LOC122354020 iars,LOC107697556 coding upstream 164179 69645 ~ 116501 (+)
LOC122354142 zgc:172352,LOC107701181,LOC107575329,LOC107747702,LOC107684012 coding downstream 70393 351955 ~ 365169 (+)
si:ch211-159e12.5 NA coding downstream 115629 397191 ~ 403408 (+)
slc11a2 slc11a2,LOC107669929,LOC107561796,LOC107747835,LOC107677945 coding downstream 143918 425480 ~ 438326 (+)
npffl npffl,LOC107747841,LOC107669931,LOC107738884,LOC107677943 coding downstream 158658 440220 ~ 442079 (+)
alas1 alas1 coding downstream 161391 442953 ~ 448514 (+)
G78048 NA non-coding upstream 26165 169465 ~ 254515 (+)
G78072 NA non-coding downstream 57274 338836 ~ 339676 (+)
G78061 NA non-coding downstream 69057 350619 ~ 350944 (+)
LOC122354311 NA non-coding downstream 86241 367803 ~ 373639 (+)
G78047 NA non-coding downstream 120883 402445 ~ 405473 (+)
LOC122353670 NA non-coding downstream 121890 403452 ~ 404970 (+)
LOC122353551 NA other upstream 215532 63006 ~ 65148 (+)
G78055 LOC107569407,LOC107569398,LOC107688685,LOC107571108 other downstream 51507 333069 ~ 334396 (+)
LOC122354326 LOC107747702,LOC107684012,LOC107574232,LOC107701181,LOC107737133 other downstream 66955 348517 ~ 350442 (+)
G78083 NA other downstream 127771 409333 ~ 410684 (+)
G78084 NA other downstream 130477 412039 ~ 412753 (+)
iars1 iars,LOC107697556 other downstream 304853 586415 ~ 599371 (+)

Expression


Co-expression Network