LOC122354000


Basic Information

Item Value
gene id LOC122354000
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 453562 ~ 456072 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251954.1
TACGGATCAGGACATGAGGAAGAGTACGGATCAGGACATGAGGAAGAGTATGGATCAGGACATGAGGAAGACTACGGATCAGGACATGAGGAAGAGTACGGATCAGGACATGAGGAAGACTACGGATCAGGACATGAGGAAGAGTAACGATCAGGACATGAGGAAGAGTACGGATCAGGACATGAGGAAGAGTAATGATCAGGACATGAGGAAGAGTACGGATCAGGACATGAGGAAGAGTAATGATCAGGACATGAGGAAGAGTAGCGATCAGGACATGAGGAAGAGTAACGATCAGGACACAAAGATTGTTGCTGTTGTTCATGTTTGGGCAGTGGTCAGCGGTGAGGGGCTGTTGCTTActtttgttttggttgtttgtgtatttagtttCTAAAGCATATGTTTATTGTCTCCTTCTCTCTGAACTGTTCAGAACAAACTCAGGACCTCTAACTATTTTACCCAGGAGTACAAAAACAGTCACAGTctaaactgagatttatacatcgtctgaaatttgaataaataatctttccatttgCTTATGGTTTGTTAGTATAGAAAAATTTGACTGagatttaagtcattttttgcTCCAGAgtcacatttattataatatacagaGGTGAATAGATATAAAACGTGTGACTTAAATGTGTGTtgtggatgttttctttccactagtctAAAAGGCCACACTCTCAAAATGGGTGAGTGTGTGGAAAAACCATTCCTTTTTCCATAAATATGTTGTGTTAGATGCTACAGCAGTGACAGGAGTAAACTAATACGTTCATTTAGATCGATTGAATTGGATTGCTAAGAACCGGCCTGGCCTTTGCTCCACTGCGAGATCACACCCAGAAACATTCCAGCGGCCTGACACGACACCAGCCGACGAAACCACACAGAGCATGACAACACCTCAGAAACAACAGCATGACGAGATGCCAGCAGCTCTTCCTCGGAGTTCCTCAGCTGATGCAGGACGAGACGGCTTCACGAAGCTGGTCTCTGGTCTCTGGCGCCGGTCCAGCTCTGCTCTCTGAGGGCCGAGTGGGCGGCACCCATCTCCTCGCTCAGGGACTCTGTAAACAGAGCTTTGTCACGCGAACATAGGAAACCCTTTTCCTTTCTTTAAGCAGCAAACAAAAGACAGCAGTGTTCACCGGCTGGAGCCAGCTTGAGCTCACTCTGATATGATTATATAAAGACGGCGAGGTTTAAGATGAACAGACCTCGCACACaggtttttaatataaacatctTAAACATAGTTTATTAAACCGTGCTGATTCGCATAAATTAGCGTTTGCTCTTTCTCACGCCGTCCAAGATTCGGATGAGCGATTAGCaatggagtgaatgggtgccgtcagaatgagagtccaaacagctgataacaACGAATCAATCAGTAAACATCTTCATGTTTCAAATCTAGCCCGACGTTTTAACTAAAAAACGAATATAAAGGTTGCTTTCAGCTAAAATAGTCCATAATCCATACTAATGCCTTCTCAAGTGAAGACCTCTGGATTGGGGTATTTTCTAGTATTTTATAAACAATGGTTTGATCTTAGGAATGTGGAAGCTGGAACAGCATGTTCTCATGAAGTGAAGAAAGGGGTTGAAGCGACCAGAATACCATGAatcccatcatcatcatcatcatcatcatcatcatcatccagtgGCGTAGCTGGAGATGTTAGAGATTTTGACTGTGATGTTTAGTGAATTATTGGTAGAGTAAACTcttcataatatatattcacTGATTAGTTTGCTTAGGTTTGTGTCACAAGGCACTCCGTTTTTGGACCTGACTTTCTCGTTCTGGGGTGGGGAGGTTTTGGCGCTGAAGCAGGAGAAGACCTGAAACAATAGACAGAGATAACGGAGCTGAGAGACGATCCAGAGCGGAAGCAGGAGCTCTGATGGCTCATCCAGACTCATCCGCTCTTTTCACGTCTTCACTGTTTCATGCTTCATTCTGTTTCatgaaattttcttttaaataccgTGTGACAACTTACCCCATGTAATCTGCTAGCTAGGGGGAAGCTCATAAAGATATTATAGACTCCTTTAAGGGTTTTCATTATGTGTTTATCTGCTGGGTGTATATTGTAACTGTTTAAGGGAAGAAAAGCATTAGGTTTcttgaattatataaataatacaataaagatAGACGTGTCGTTTCTCGAATCTTCTCAAGGCAATGTCTAACCTTTCCCCTTATCACTGAGATATCAGTCGACCAAACAACATGAAACGCCAAACAGGTGAAGAGTTAATCAGCTGTAATATGAACCCTGTCAAA

Function

GO:

id name namespace
GO:0009615 response to virus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251954.1 True 2332 mRNA 0.42 2 453562 456072

Neighbor

gene id symbol gene type direction distance location
alas1 alas1 coding upstream 5048 442953 ~ 448514 (+)
npffl npffl,LOC107747841,LOC107669931,LOC107738884,LOC107677943 coding upstream 11483 440220 ~ 442079 (+)
slc11a2 slc11a2,LOC107669929,LOC107561796,LOC107747835,LOC107677945 coding upstream 15236 425480 ~ 438326 (+)
si:ch211-159e12.5 NA coding upstream 50154 397191 ~ 403408 (+)
LOC122354142 zgc:172352,LOC107701181,LOC107575329,LOC107747702,LOC107684012 coding upstream 88393 351955 ~ 365169 (+)
poc1a poc1a,LOC108424582,LOC107747840 coding downstream 880 456952 ~ 493701 (+)
dusp7 dusp7,LOC107697567,LOC107677944,LOC107712495 coding downstream 41822 497894 ~ 506639 (+)
slc6a11b slc6a11,LOC107750026,LOC107561801,LOC107697565 coding downstream 265738 721810 ~ 741292 (+)
slc6a1b slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 coding downstream 311216 767288 ~ 775904 (+)
hrh1 hrh1,LOC107697554,LOC107750035,LOC107570335,LOC107576492 coding downstream 385560 841632 ~ 845908 (+)
G78089 NA non-coding upstream 28484 424386 ~ 425078 (+)
G78081 LOC107747831,LOC107561793,LOC107684010 non-coding upstream 45158 405735 ~ 408404 (+)
G78047 NA non-coding upstream 48089 402445 ~ 405473 (+)
LOC122353670 NA non-coding upstream 48592 403452 ~ 404970 (+)
LOC122354311 NA non-coding upstream 79923 367803 ~ 373639 (+)
LOC122353680 NA non-coding downstream 615002 1071074 ~ 1074580 (+)
G78370 NA non-coding downstream 739152 1195224 ~ 1195463 (+)
G78380 NA non-coding downstream 761152 1217224 ~ 1222835 (+)
G78400 LOC107747473,LOC107550334,LOC107654802 non-coding downstream 820443 1276515 ~ 1277127 (+)
G78455 NA non-coding downstream 966661 1422733 ~ 1425764 (+)
G78084 NA other upstream 40809 412039 ~ 412753 (+)
G78083 NA other upstream 42878 409333 ~ 410684 (+)
LOC122354326 LOC107747702,LOC107684012,LOC107574232,LOC107701181,LOC107737133 other upstream 103120 348517 ~ 350442 (+)
G78055 LOC107569407,LOC107569398,LOC107688685,LOC107571108 other upstream 119166 333069 ~ 334396 (+)
LOC122353551 NA other upstream 388414 63006 ~ 65148 (+)
iars1 iars,LOC107697556 other downstream 130343 586415 ~ 599371 (+)
atp2b2 atp2b2,LOC107561799,LOC107570616,LOC107746712,LOC102776443,LOC107697566 other downstream 147066 603138 ~ 709490 (+)
atg7 atg7,vgll4,vgll4b,LOC107697561,LOC107750032,LOC107750033,LOC107697562 other downstream 392103 848175 ~ 913799 (+)
tsen2 tsen2 other downstream 578337 1034409 ~ 1040239 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other downstream 618635 1074707 ~ 1077399 (+)

Expression


Co-expression Network