LOC122325212


Basic Information

Item Value
gene id LOC122325212
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 142976 ~ 622608 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU12212
aagcctcaacgtCCCAAATACCCCAGCTGCCTTGGCCCTATGGCTATCCTGGCTACCCTTTTGGTGACCCAAACCTTGTTCCGTCCTCAGGCTCTGACACTGGACCAGGTGGCCAAGGACCAGATGGAAATCCTCCTTTGCAAGGCTCTTATCCAAAATACCCAGTTCAGTCTCCTCCCACTGCACAGCCTGTAACCACTACTCCTCAACCCTGTACTACAACTGCAGCTGCTGAATGCTGGCCCTCTGCCAACCAGCCTGATGTGCCACCCCAGCAATATGTACCTCCCAGCTCTGTACTGTATGAAAATACCCCTTTGCACTTCAATTTGTGGACTTTTTGGACCCCAACTCTTTCCCATGAAGCTGAGGATTGTGGCTAGATGCGTTGAATTAGACTGGTAATGTGCTGTACGTGGCTTTCAAAGATTTGCCTCCTGATTTAATGGTAATCTAAAGTGATTCCTGTTCATGAACATTCTGCGTTTTTTGTCCTGTCTTCAATTGCTAAATAAACTTgatcaaaaaATGAAAAATACCCCTTTGCACTTCAATTTGTGGACTTTTTGGACCCCAACTCTTTCCCATGAAGCTGAGGATTGTGGCTAGATCGTTGAATTAGACTGGTAATGTGCTGTGCGTTGGCTTTCAAAAAGATTTGCCTCCTGATTTAATGGTAATCTAAAGTGATTCCTGTTCATGAACATTC
>XR_006247266.1
GGTGACCCAAACCTTGTTCCGTCCTCAGGCTCTGACACTGGACCAGatggaaagcctcaacgtCCCAAATACCCCAGCTGCCTTGGCCCTATGGCTATCCTGGCTACCCTTTTGGTGACCCAAACCTTGTTCCGTCCTCAGGCTCTGACACTGGACCAGatggaaagcctcaacgtCCCAAATACCCCCAGCTGCCTTGGCCCTATGGCTATCCTGGATACC

Function

GO:

id name namespace
GO:0046332 SMAD binding molecular_function
GO:0070412 R-SMAD binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12212 True 709 lncRNA 0.46 2 151098 622608
XR_006247266.1 False 222 lncRNA 0.56 3 142976 157072

Neighbor

gene id symbol gene type direction distance location
zgc:153615 zgc:153615,LOC107747506,LOC107691014,LOC107708656,LOC107599852,LOC108430722,LOC103026425 coding downstream 26376 648984 ~ 654781 (+)
zmp:0000001127 NA coding downstream 36149 658757 ~ 662000 (+)
txndc12 txndc12,LOC107708672,LOC107681819,LOC107690994,LOC107599851,LOC107566463,LOC107739415 coding downstream 41183 663791 ~ 667351 (+)
slc25a24l slc25a24l,LOC107708925,LOC107681683,LOC107751862,LOC107566460,LOC107599866 coding downstream 62615 685223 ~ 692838 (+)
cope cope,LOC107709006,LOC107690966,LOC107681743 coding downstream 70609 693217 ~ 696664 (+)
LOC122325219 NA non-coding downstream 11543 634151 ~ 634766 (+)
LOC122328698 NA non-coding downstream 20426 643034 ~ 644926 (+)
G8173 NA non-coding downstream 45696 668304 ~ 671563 (+)
G8222 dnajb4,LOC107681825,LOC107599850,LOC107708915,LOC107566472,LOC107751861,LOC107690981 non-coding downstream 58079 680687 ~ 782745 (+)
G8394 NA non-coding downstream 557522 1180130 ~ 1186032 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other downstream 177324 799932 ~ 828405 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other downstream 774916 1397524 ~ 1408721 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other downstream 922165 1544773 ~ 1559774 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other downstream 1280459 1903067 ~ 1910679 (+)
arl14 arl14,LOC107722413,LOC107719289 other downstream 1310904 1933512 ~ 1936759 (+)

Expression


Co-expression Network