LOC122325207 (gpt2l,LOC107599855,LOC107708598,LOC107691046,LOC107747508)


Basic Information

Item Value
gene id LOC122325207
gene name gpt2l,LOC107599855,LOC107708598,LOC107691046,LOC107747508
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 248481 ~ 256886 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU12266
AGTTGCTTGCGCTTCTTATGAAATCTTGAACTATCCGATGCACAAGTCCAAAGGTCTTCTCGAGTAATTCTTTGTAGGGTTTGCTGCGCGCGCAACGGCAAGCGCGCGCTGAAAACCAAAgtttaaaaaccaaaacttAAGCGCTACCTCTTCGCAAACCcgcgcttctttttttttttttttttttaccgttttgaaaaatgttatctAAAAAGAACCGTGGGTGTTTTGAAATGGGGAAAGCGCGAGGCTTACGCGGCGGCGTACCCCAATGTTCCAGACTGGGTCCTGAACTTTTCTCCGCTGCCTTCCCTTTCTTCTCCCCGTAGGAATCTTTCTGCATTCCCGGCGGCCCAAAGCGAACATCTGCACCAGAAGATGACCGAAAACGGAGCGTTACCCCTTCGGGGGAAAGTGCTCACCGTTGACACCATGAACGCCAACGTCAAAAAGGTGGACTACGCGGTTCGCGGACTGATCGTTCAGCGCGCGGTTCAGATCGAGAAGGAGCTGAAAGAGataCTCGCATGCaaactctctgtctcttctgaTTTTATGGACCAAAAACATTGATGAATCAACAGGATTTTTCCAATCAGATGCTTGCTAGAGCGAGAATGTCCCTCCCAAAATTTCCTGCAACTAACTAGCAAGTAACCCTTCATTATGTCCTGCTGTTTCAATAGGAACTAC
>XR_006247265.1
GGAGGTTCGCTGCGAAGGGAAGTTTTACACCGGTCAAAGTTTTGAGCCGCTTCAGACGCTTCACACGGGTCGATCGTTGCCGTCTGTCGTCTCGGTAACCGAGGAAGCTTCCCTTTCTTCACTTCTGGAATCTTTCTGCATTCCCGGCGGCCCAAAGCGAACATCTGCACCAGAAGATGACCGAAAACGGAGCGTTACCCCTTCGGGGGAAAGTGCTCACCGTTGACACCATGAACGCCAACGTCAAAAAGGTGGACTACGCGGTTCGCGGACTGATCGTTCAGCGCGCGGTTCAGATCGAGAAGGAGCTGAAAGAGGGGGTAAAGAAGCCTTT

Function

NR:

description
PREDICTED: alanine aminotransferase 2-like isoform X1

GO:

id name namespace
GO:0006103 2-oxoglutarate metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004021 L-alanine molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12266 True 693 lncRNA 0.47 2 248760 251979
XR_006247265.1 False 334 lncRNA 0.55 3 248481 256886

Neighbor

gene id symbol gene type direction distance location
LOC122325174 NA coding upstream 8085 238742 ~ 240396 (+)
LOC122325083 erich6,LOC107681751,LOC107708872,LOC107708884 coding upstream 15071 224016 ~ 233410 (+)
wu:fi34b01 NA coding upstream 73473 171622 ~ 175008 (+)
LOC122325106 pter,LOC107681810,LOC107599857 coding downstream 303093 559979 ~ 564990 (+)
LOC122325155 selt1a,selenot,LOC107681817,LOC107708642,LOC106599070 coding downstream 348200 605086 ~ 609167 (+)
zgc:153615 zgc:153615,LOC107747506,LOC107691014,LOC107708656,LOC107599852,LOC108430722,LOC103026425 coding downstream 392098 648984 ~ 654781 (+)
zmp:0000001127 NA coding downstream 401871 658757 ~ 662000 (+)
txndc12 txndc12,LOC107708672,LOC107681819,LOC107690994,LOC107599851,LOC107566463,LOC107739415 coding downstream 406905 663791 ~ 667351 (+)
G8169 NA non-coding upstream 27737 210641 ~ 220744 (+)
LOC122325201 NA non-coding upstream 84834 162991 ~ 163647 (+)
G8207 NA non-coding downstream 230894 487780 ~ 515969 (+)
G8209 c1ql3b,LOC107708591,LOC107747511,LOC107599856,LOC107681760,LOC107566459,LOC107691085,LOC107691073 non-coding downstream 309010 565896 ~ 566914 (+)
G8151 NA non-coding downstream 314143 571029 ~ 603945 (+)
G8213 gpt2l,LOC107599855,LOC107691046 non-coding downstream 326476 583362 ~ 584348 (+)
LOC122325219 NA non-coding downstream 377265 634151 ~ 634766 (+)
LOC122325097 fuz,LOC107708997,LOC107691039 other upstream 3117 241451 ~ 245364 (+)
G8167 NA other upstream 25114 200092 ~ 223367 (+)
LOC122360757 fam73b,miga2,miga1,LOC107599369,LOC107705989,LOC107675762,LOC107737175,LOC107661559,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 other downstream 190276 447162 ~ 457745 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other downstream 543046 799932 ~ 828405 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other downstream 1140638 1397524 ~ 1408721 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other downstream 1287887 1544773 ~ 1559774 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other downstream 1646181 1903067 ~ 1910679 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G23318 NA non-coding CI01000003 null 1839845 ~ 1849069 (+)