G8237 (LOC107599853,LOC107708895)


Basic Information

Item Value
gene id G8237
gene name LOC107599853,LOC107708895
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 142744 ~ 223934 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU12353
TTGATCAAGTTTATTTAGCAATTGAAGACAGGACAAAAAACGCAGAATGTTCATGAACAGGAATCACTTTAGATTACCATTAAATCAGGAGGCAAATCTTTGAAAGCCACGTACAGCACATTACCAGTCTAATTCAACGCGTCTAGCCACAATCCTCAGCTTCATGGGAAAGAGTTGGGGTCCAAAAAGTCCACAAATTGAAGTGCAAAGGGGTATTTTTCATACAGTACAGAGCTGGGAGGTACATATTGCTGGGGTGGCACATCAGGCTGGTTGGCAGAGGGCCAGCATTCAGCAGCTGCAGTTGTAGTACAGGGTTGAGGAGTAGTGGTTACAGGCTGTGCAGTGGGAGGAGACTGAACTGGGTATTTTGGATAAGAGCCTTGCAAAGGAGGATTTCCATCTGGTCCTTGGCCACCTGGTCCAGTGTCAGAGCCTGAGGACGGAACAAGGTTTGGGTCACCAAAAGGGTAGCCAGGATAGCCATAGGGCCAAGGCAGCTGGGGGTATTTGGGACGTTGAGGCTTGACTtgtcccggcacttggactcccggcacttggactcccggcacttggactccgg
>TU12358
TCCTGGCTACCCTTTTGGTGACCCAAACCTTGTTCCGTCCTCAGGCTCTGACACTggaccagatggaaagcctcaacgtCCCAAATACCCCCAGCTGCCTTGGCCCTATGGCTATCCTGGCTACCCTTTTGGTGACCCAAACCTTGTTCCGTCCTCAGGCTCTGACACTGGACCAGGTGGCCAAGGACCAGATGGAAATCCTCCTTTGCAAGGCTCTTATCCAAAATACCCAGTTCAGTCTCCTCCCACTGCACAGCCTGTAACCACTACTCCTCAACCCTGTACTACAACTGCAGCTGCTGAATGCTGGCCCTCTGCCAACCAGCCTGATGTGCCACCCCAGCAATATGTACCTCCCAGCTCTGTACTGTATGAAAAATACCCCTTTGCACTTCAATTTGTGGACTTTTTGGACCCCAACTCTTTCCCATGAAGCTGAGGATTGTGGCTAGACGCGTTGAATTAGACTGGTAATGTGCTGTACGTGGCTTTCAAAGATTTGCCTCCTGATTTAATGGTAATCTAAAGTGATTCCTGTTCATGAACATTCTGCGTTTTTTGTCCTGTCTTCAATTGCTAAATAAACTTgatcaaaaaatgtataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>TU12371
CAAGTGCCGGGTGGCCAAGTGCCGGGTGGCCAAGTGCCGGGTggccaagtgccgggagtccaagtgccgggTGGCCAAGTGCCGGGTGGCCAAGTGCCGGGTGGCCAAGTGCCGGGTGGCCAAGTGCCGGGTGGCCAAGTGCCGGGTggcaagtgccgggagtccaagtgccgggagtccaagtgccgggagtccaagtgccgggagtccaagtgccgggagtccaagtgccgggagtccaagtgccgggagtccaagtgccgggagtccaagtgccgggagtccaagtgccggGAggccaagtgccgggagtccaagtgccgggagtccaagtgccgggagtccaagtgccgggagtccaagtgccgggagtccaagtgccggagtccaagtgccgggagtcaagtgctggagtcaagtgcgggagtcaagtgccgggagtccaagtgccgggagtccaagtgccc
>TU12372
CCGCACTGTATTTAAGAAACGCATCACTTGCTTCACAAGCGTGTGCTGTGATGGCGTCTTGGAAAATGCGGGGAAGgttgttgtttttattgagtATTTTAACGTGTATTACTTTAGTACACTGTAGAAGTTTGTCTCAGTTTTCTGGAACGGAAAAAACAAACGATGGACGTGGACGTGGTGATGCTGGAGTCTTGGgcctgtgGAACAAAATGTTCATGAAAGGGCAACTACTCAGTTCCTCTAAAGCAGCCTGGGATGCCATGTCTCCGAAGTTAAGGTGTGGTGACGATCTCATGAGTTTACAACTTGGTGGTCCAGACGTGGCAAACGTTGAACTTTGTCAAGGCAATGGGGTGCCTGTTCCCCTCACTCATCTGCCACCTGACTGTGGTCACACCACACTCACTAACAGAGGTCTTGTCTATGCTACTCCCTATGATGGATGTGGTGTTGCGCAAAAGGGAGGGCATTATGTGATGCAGATACTGTGGCAGGGAAACACTGCAG
>TU12373
TGCACAGCCTGTAACCACTACTCCTCAACCCTGTACTACAACTGCAGCTGCTGAATGCTGGCCCTCTGCCAACCAGCCTGATGTGCCACCCCAGCAATATGTACCTCCCAGCTCTGTACTGTATGAAAAATACCCCTTTGCACTTCAATTTGTGGACTTTTTGGACCCCAACTCTTTCCCATGAAGCTGAGGATTGTGGCTAGATGCGTTGAATTAGACTGGTAATGTGCTGTACGTGGCTTTCAAAGATTTGCCTCCTGATTTAATGGTAATCTAAAGTGATTCCTGTTCATGAACATTCTGCGTTTTTTGTCCTGTCTTCAATTGCTAAATAAACTTgatcaaaaaatgtatcattctgtgttttccttttt
>TU12374
tacattttttgatcAAGTTTATTTAGCAATTGAAGACAGGACAAAAAACGCAGAATGTTCATGAACAGGAATCACTTTAGATTACCATTAAATCAGGAGGCAAATCTTTGAAAGCCACGTACAGCACATTACCAGTCTAATTCAACGCATCTAGCCACAATCCTCAGCTTCATGGGAAAGAGTTGGGGTCCAAAAATCCACAAATTGAAGTGCAAAGGGGTATTTTTCATACAGTACAGAGCTGGGAGGTACATATTGCTGGGGTGGCACATCAGGCTGGTTGGCAGAGGGCCAGCATTCAGCAGCTGCAGTTGTAGTACAGGGTTGAGGAGTAGTGGTTACAGGCTGTGCAGTGGGAGGAGACTGAACTGGGTATTTTGGATAAGAGCCTTGCAAAGGAGGATTTCCATCTGGTCCTTGGCCACCTGGTCCAGTGTCAGAGCCTGAGGACGGAACAAGGTTTGGGTCACCAAAAGGGTAGCCAGGATAGCCATAGGGCCAAGGCAGCTGGGGGTATTTGGGACGTTGAGGCTTGACTtgtcccggcacttggactcccggcacttggactcccggcacttggactccgg
>TU12376
GGAAACACTGCAGTAATATCTTGTCCTATGCCCTCCACCACTGCAACACTGAAACCCCCATCTCCTGGTTATCAAGAGTATTTGCAAGGGTTTTGGCCTTTTTCCAGTTATCTTTATCCTGGAAGGGTTTATTCTATGTCTATGCAAACAGACACACCTGTTACAACTACCGTAGTTTCTCAAGtaccagatggaaagcctcaacgtCCCAAATACCCCCAGCTGCCTTGGCCCTATGGCTATCCTGGATACCCTTTTGGTGACCCAAACCTTGTCCCATCCTCGGGCTCTGACGCTGCGCCAGGTGGCCAAggaccagatggaaagcctcaacgtCCCAAATTCCCCCAGCTGCCTTGGCCCTATGGCTATCCTGGATACCCTTTTGGTGACCCAAACCTTGTCCCATCCTCGGGCTCTGACGCTGCGCCAGGTGGCCAAggaccagatggaaagcctcaacgtCCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12353 False 583 lncRNA 0.50 2 142744 143439
TU12358 True 634 lncRNA 0.46 3 156246 220990
TU12371 False 467 lncRNA 0.68 3 203565 222146
TU12372 False 510 TUCP 0.35 5 198628 223934
TU12373 False 374 lncRNA 0.43 2 210605 220743
TU12374 False 590 TUCP 0.47 3 142744 151630
TU12376 False 470 TUCP 0.52 2 214738 223145

Neighbor

gene id symbol gene type direction distance location
LOC122325145 selt1a,selenot,LOC107681817,LOC107708642,LOC106599070 coding upstream 9573 233507 ~ 237593 (-)
LOC122325049 LOC107566471,LOC107552291,LOC107691105,LOC107681831,LOC107747512 coding upstream 70535 294469 ~ 316685 (-)
LOC122325182 NA coding upstream 208734 432668 ~ 445573 (-)
LOC122325042 LOC107708546,LOC107681784,LOC107747514,LOC107691124 coding upstream 244662 468596 ~ 515724 (-)
LOC122325126 c1ql3b,LOC107747511,LOC107599856,LOC107566459,LOC107681760,LOC107691085,LOC107708591,LOC107691073 coding upstream 340729 564663 ~ 566800 (-)
G8257 NA non-coding upstream 67472 291406 ~ 369448 (-)
LOC122325225 NA non-coding upstream 174192 398126 ~ 403822 (-)
G8273 LOC107681831,LOC107552291,LOC107708861 non-coding upstream 324100 548034 ~ 551702 (-)
G8279 NA non-coding upstream 395818 619752 ~ 635841 (-)
G8280 NA non-coding upstream 396493 620427 ~ 637790 (-)
dipk2aa dia1a,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108437525,LOC108268022 other upstream 956011 1179945 ~ 1202987 (-)
mfsd8l2 si:ch211-38m6.6,LOC107681768,LOC107656858,LOC107565819,LOC107722537,LOC107599859,LOC108437504,LOC105026921 other upstream 1107496 1331430 ~ 1337998 (-)
colgalt2a LOC107593860,LOC107681694,LOC107715500 other upstream 1301814 1525748 ~ 1532557 (-)
gng5 NA other upstream 1698361 1922295 ~ 1940721 (-)
slc1a7a slc1a7a,slc1a7,LOC107722044,LOC107671767,LOC107681716,LOC107593788 other upstream 1792474 2016408 ~ 2038705 (-)

Expression


Co-expression Network