G8309


Basic Information

Item Value
gene id G8309
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 774259 ~ 776958 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU12488
taaatgcatcaatttctaatatatatatatatatatatatatatatagtagtgtaaacttttattattgttaatgttgttaaaaaaaatctcataccTTTAGCAACATTTTTGGCGCTGcttcatgtataaatatatgggCTAAGAAACATACgaaagtaattaaatttttaagaaaaaccaagacaaaaatactgcaaaaaacCCTGTATTGTCCACATACTTTTGGTCATGAAGTGTATATCCTAACAGTATCAAGTATGACTGAGGCATGAACAACACAAGCTAAagtcaaaaatacatgaaaatgtgAAAGTGCCATTTCTTGAACAGCTCTGGTTTATGTCACACGGTGAACAAAATCAATACAGAGGCCAGGAAATGACGATCCTGGGTCAGCACTCTGAGAAATTGAGCTGACATCAATTGTTTTAATGAACAGGTTGGCCAGAGGCGTGAGCAGTATCTCATCAAAGTGCTCCATAACTGGCGCCTGCCTCCCGTTCAGTGTATCAGTCTCATATTCTCATGCCATATATAATTCTCCCTTCACGCAGCCAGTGCATCCATCTTCTTCtcctggggaaaaaaagctgtgACGGTGCTCACACGATGTCGCAGTGCTAGTCAAACATGCACAGAGTGGTGCATTAGAAGAGAAAGGCTGTCCGGGCTGAGCTGCCAGATGATGTCAGAATCACAAACTGATGTGAAAACTTGTTACGTACTGTTTCGGCGATGATAAATGTTCTTGATATACATGCAAAAAGAGTGCATGCTTAGTTtgatgggggggaaaaaaacaaggtgAAGCACAACGGATGACTCGAAGCGGTAGGGGAGCCCCAAGAGCGCTGCATTGTCTGCTGGTTTATATGATGCTACGACACTTAGCTACAGCAGCTGATCAAATTAACCTGCTGATCTGACAACAGAGGCGGTGTAGCTTCATCTCACGGGAATTCAGGATGCTGACGGGTGGTGGACAGgagtgtcatttttaaataagcaaataaggCATAAAAAATGAAGGATTGGTTACTTTGCACAGTCAACATACGCTACACTTCATACAGGCACGTTCTTGACATCTGAATTGAGTCATTCTGAATCGTTCTTCAAGTCTTTTGTCGACAGCAGACCTAGATATCGTAAGCAATGCTGCGTTCTTGTCATGGCACGTACAACAGAATATCGCTTTGTATTCTACAGTCTCAGATGAACAAATGCATATGTGTTCTTTTGTTCagggaataaataaaaaaccgGAGTAATACGTTCCTGAATGACCTATTAAGCTGCTCAAAGGATGCTTTCAATGTTACGCTTCCAAAGGGATGTCAGAGGTGTAGCGAAAATTGTTTacgatttttgtgtttttttttatttaagtaaaatgtttgACTGTGACTGTTTTCCTAAGATCTGTTTCAGTCCAATGCTCACCTATGAGAcaagaataacaataataatattataataaaaataaccgccaaataataatacatgaaacTAGGGCTGGAAGATATATCAAATTATCACGATTATTATGCTgcaggaattaaaaaaataacttaatatagCTATTAAGTTTTCTAAAGTCTGTGAAATCTGATTTAGCAGCATTACTAAAATCTAAACTGTATTAGAGTTTATTAACGTTTTGACTTTTCGTTTACATGAAAACTGTGTTTTGGGGACTGAAAACacgtattttttaaaaaaatgttagaaagtgtgtatttttgaaaatgccacCGTTATCGTTTCCGGTGATGTCCTGTGTGTGCTTAGTAAGTGTCTAGGCGAGCGCAAACAAACATACGCCACAATGGAGTATGTGGTACTGTTGTTGCTGCTAATGTTTCTTTAGCAAGTTGTATGAATTTACTTCACCGATAATATAACCAACAGTGGGGAAAAATCATATACatcatatattcaaaaatatatatatataaacgaaaatatattcaaatataatcaaaaagCTGAAGGGTATTGAAATATAActtgaaaaataatttgttatatcTGCCAGCCCTAAAGTGAGCCCACTTAAGGTAATGAAAGCTAAAGCAAGGATGTGACGTTCTTTGTAGATCTCTTCTGCAATACGTGTGCCTCGACATACACTACTTGATTGTCCAGATGAGAATAAAATGACAACATGCAAAATCCACTATTTGATCACACCAGGATCAACACGAGGTTCATTAACAACTCTCCTCGCGGTCACAATGGGCTACTTACTTCACTCAAACAACTGCCATTTGAAATCGCATTTGGAATGATTCGTTTAGCCAATACATTACTTTACGATGTAGGGGAAACGAGCCAACAGAGCTGTAGTATCAAGGGATATTCTGAACGAATGGGAGTCTTGGTCATGACAGCTGCCACTCCGGGCTGAAAAACTTGATGGGGTGCGACTTAGCCCATTTCGCGAAAACAGCCTTCTCTGTGATGAATCGGTGGCCGCCATAAGGGGCGCTCTCGTGCAAGAGGTATTCGGCACATTCGTCACGACTTCCTGCTTCATAGTAGTGGTACGGCACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12488 True 2559 lncRNA 0.38 2 774259 776958

Neighbor

gene id symbol gene type direction distance location
dnajb4 dnajb4,LOC107681825,LOC107599850,LOC107751861,LOC107690981,LOC107566472,LOC108430719 coding downstream 89246 680675 ~ 685013 (-)
gipc2 gipc2,LOC107681828,LOC107690984 coding downstream 93876 668300 ~ 680383 (-)
LOC122325090 fuz,LOC107708997,LOC107691039 coding downstream 173025 597212 ~ 601234 (-)
LOC122325065 gpt2l,LOC107599855,LOC107708598,LOC107691046,LOC107747508 coding downstream 180038 579773 ~ 594221 (-)
LOC122325126 c1ql3b,LOC107747511,LOC107599856,LOC107566459,LOC107681760,LOC107691085,LOC107708591,LOC107691073 coding downstream 207459 564663 ~ 566800 (-)
pigk LOC106594017,LOC104946057 coding upstream 66257 843215 ~ 875227 (-)
zzz3 zzz3,LOC107681788,LOC107599843,LOC107703198,LOC107708932,LOC107703238 coding upstream 176758 953716 ~ 973343 (-)
usp33 usp33,LOC107708728,LOC107751869,LOC107681685 coding upstream 197167 974125 ~ 995748 (-)
fubp1 fubp1,LOC107681766,LOC107703234 coding upstream 229631 1006589 ~ 1015386 (-)
chst2a chst2a,LOC107681814,LOC107599839,LOC107656863,LOC107722292 coding upstream 468116 1245074 ~ 1247262 (-)
G8296 NA non-coding downstream 79889 693580 ~ 694370 (-)
G8280 NA non-coding downstream 136469 620427 ~ 637790 (-)
G8279 NA non-coding downstream 138418 619752 ~ 635841 (-)
G8273 LOC107681831,LOC107552291,LOC107708861 non-coding downstream 222557 548034 ~ 551702 (-)
LOC122325225 NA non-coding downstream 370437 398126 ~ 403822 (-)
G8375 NA non-coding upstream 221411 998369 ~ 999689 (-)
G8385 NA non-coding upstream 265787 1042745 ~ 1042950 (-)
G8386 NA non-coding upstream 269632 1046590 ~ 1046907 (-)
G8415 NA non-coding upstream 471218 1248176 ~ 1248590 (-)
G8439 LOC107722542 non-coding upstream 532987 1309945 ~ 1310291 (-)
LOC122325167 NA other downstream 170315 119350 ~ 603944 (-)
dipk2aa dia1a,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108437525,LOC108268022 other upstream 402987 1179945 ~ 1202987 (-)
mfsd8l2 si:ch211-38m6.6,LOC107681768,LOC107656858,LOC107565819,LOC107722537,LOC107599859,LOC108437504,LOC105026921 other upstream 554472 1331430 ~ 1337998 (-)
colgalt2a LOC107593860,LOC107681694,LOC107715500 other upstream 748790 1525748 ~ 1532557 (-)
gng5 NA other upstream 1145337 1922295 ~ 1940721 (-)
slc1a7a slc1a7a,slc1a7,LOC107722044,LOC107671767,LOC107681716,LOC107593788 other upstream 1239450 2016408 ~ 2038705 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015231 NA non-coding NC_007113.7 CM002886.2 9132585 ~ 9330209 (+)
rainbow trout (Oncorhynchus mykiss) G1983533 NA non-coding NC_048589.1 CM023243.3 41626068 ~ 41628090 (+)