st6galnac5a (st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866)


Basic Information

Item Value
gene id st6galnac5a
gene name st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 799932 ~ 828405 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU12491
ACGTTCTCCCTCCGCTCGCCGCTCTCAAGAATGGGTTCAGTCCGCGCGCACGGCACACACACTGCCATCTCTCAGCGCGAGCGGAGCGCGGCAATTTAATGACGACATAATCTGATGAAGTAGCAGCAATCGGGGAAAAAAGTGGATCTTCATGCGCACATCCCCGGGAATATTCCAGCTGGCTTCAGGATGAAGACACCGATGCGCCATGGAGTAGCCGTGTTTCTCGCGATCACCATGTGCACCAGTCTGTTGTTCGTGTACAGCGTCGGCTACAATAATACTACAGCGTCCGGCTCGTCTAAGGGCGCGTCAGGTGAAAAAGTGGAGCCCACCAGTGCGCCCCGCGCGCTTCCAGCACTGCAGGGATACAGCAGCATCATTGAGCACAAGCCTCTAAAGATGCACTGCGGGAGCTGCGCGCTGGTCACCAGCTCGGGTCATCTAACCGGTGGGGGTCGCGGAAAAGAGATCGATCAGGCGGAGTGCGTCATTCGAATGAATGACGCGCCCACGGCCCGTGGCTACGGGGTGGACGTGGGTCACCGCACGAGCCTGAGGGTCATCGCTCATTCCAGCATGCAGAGAGTTCTGCGCAGCCGCCACGAACTCCTCAACTCCAGTCAGGACACGGTCTTCATCTTCTGGGGACCCAGCAGTTATATGAGAAGGGATGGGAAAGGCCTGGTTTATAACAACCTGCGGCTTATGAACCAAGTGCTGCCTAAACTCAAGGTCTATATCATCTCCTGGCAGAAAATGCTCCAGTTTGATGACCTATTCAAGAGAGAGACCGGCAAAGACAGGAGAATCTCTAACTCGTGGTTAAGCACAGGCTGGTTCACAATGACGATTGCCTTAGAGCTCTGTGACAGAATCAATGTATACGGCATGGTGCCTCCGGATTTCTGTAGGGAGTCTCAGCACCCCTCCGTCCCATATCACTACTACGAACCGGACGAGTCCGGACGAATGTGCCATGTACATCTCCCAC
>XM_043256339.1
TGGGTTCAGTCCGCGCGCACGGCACACACACTGCCATCTCTCAGCGCGAGCGGAGCGCGGCAATTTAATGACGACATAATCTGATGAAGTAGCAGCAATCGGGGAAAAAAGTGGATCTTCATGCGCACATCCCCGGGAATATTCCAGCTGGCTTCAGGATGAAGACACCGATGCGCCATGGAGTAGCCGTGTTTCTCGCGATCACCATGTGCACCAGTCTGTTGTTCGTGTACAGCGTCGGCTACAATAATACTACAGCGTCCGGCTCGTCTAAGGGCGCGTCAGGTGAAAAAGTGGAGCCCACCAGTGCGCCCCGCGCGCTTCCAGCACTGCAGGGATACAGCAGCATCATTGAGCACAAGCCTCTAAAGATGCACTGCGGGAGCTGCGCGCTGGTCACCAGCTCGGGTCATCTAACCGGTGGGGGTCGCGGAAAAGAGATCGATCAGGCGGAGTGCGTCATTCGAATGAATGACGCGCCCACGGCCCGTGGCTACGGGGTGGACGTGGGTCACCGCACGAGCCTGAGGGTCATCGCTCATTCCAGCATGCAGAGAGTTCTGCGCAGCCGCCACGAACTCCTCAACTCCAGTCAGGACACGGTCTTCATCTTCTGGGGACCCAGCAGTTATATGAGAAGGGATGGGAAAGGCCTGGTTTATAACAACCTGCGGCTTATGAACCAAGTGCTGCCTAAACTCAAGGTCTATATCATCTCCTGGCAGAAAATGCTCCAGTTTGATGACCTATTCAAGAGAGAGACCGGCAAAGACAGGAGAATCTCTAACTCGTGGTTAAGCACAGGCTGGTTCACAATGACGATTGCCTTAGAGCTCTGTGACAGAATCAATGTATACGGCATGGTGCCTCCGGATTTCTGTAGGGAGTCTCAGCACCCCTCCGTCCCATATCACTACTACGAACCGACGAGTCCGGACGAATGTGCCATGTACATCTCCCACGGCGAAGCGGCCAGAGGCAGCCACCATCGCTTCATCACAGAGAAGCGGGTCTTTGCCAGCTGGGCTCGGACGCTCAACATCCATTTCTACCAGCCGGACTGGAGTCCGCCGCCGTTACCGAGAAATAGCACGGCAACCGCAGCCTCTCCCCGATCTCAGAAGACGTGACTCTCGCCAGAGCCTTCAAAGATCTCCA

Function

symbol description
st6galnac5a Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; intestine; and testis. Orthologous to human ST6GALNAC5 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5).

NR:

description
PREDICTED: alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001665 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity molecular_function

KEGG:

id description
K03375 SIAT7E, ST6GalNAc V; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7E)

RNA

RNA id representative length rna type GC content exon number start site end site
TU12491 False 994 TUCP 0.55 5 799932 828209
XM_043256339.1 True 1158 mRNA 0.56 6 799963 828405

Neighbor

gene id symbol gene type direction distance location
st6galnac3 st6galnac3,LOC107599847,LOC107681790,LOC107558185 coding upstream 23132 706551 ~ 776800 (+)
cope cope,LOC107709006,LOC107690966,LOC107681743 coding upstream 103268 693217 ~ 696664 (+)
slc25a24l slc25a24l,LOC107708925,LOC107681683,LOC107751862,LOC107566460,LOC107599866 coding upstream 107094 685223 ~ 692838 (+)
txndc12 txndc12,LOC107708672,LOC107681819,LOC107690994,LOC107599851,LOC107566463,LOC107739415 coding upstream 132581 663791 ~ 667351 (+)
zmp:0000001127 NA coding upstream 137932 658757 ~ 662000 (+)
ak5 ak5,LOC107681791,LOC107599844,LOC107703241 coding downstream 47353 875758 ~ 952394 (+)
miga1 miga1,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 coding downstream 167432 995837 ~ 1006604 (+)
si:ch211-71m22.3 NA coding downstream 191342 1019747 ~ 1024763 (+)
LOC122357034 LOC107599864,LOC107681686,LOC107708940 coding downstream 198888 1027293 ~ 1032989 (+)
LOC122324991 NA coding downstream 207270 1035675 ~ 1039604 (+)
G8222 dnajb4,LOC107681825,LOC107599850,LOC107708915,LOC107566472,LOC107751861,LOC107690981 non-coding upstream 17187 680687 ~ 782745 (+)
G8173 NA non-coding upstream 128369 668304 ~ 671563 (+)
LOC122328698 NA non-coding upstream 155006 643034 ~ 644926 (+)
LOC122325219 NA non-coding upstream 165166 634151 ~ 634766 (+)
LOC122325212 NA non-coding upstream 177324 142976 ~ 622608 (+)
G8394 NA non-coding downstream 351725 1180130 ~ 1186032 (+)
G8393 dia1a,LOC107599840,LOC107681802,LOC107722302,LOC107565821,LOC107679841 non-coding downstream 369022 1197427 ~ 1203014 (+)
G8451 NA non-coding downstream 553714 1382119 ~ 1382323 (+)
G8449 NA non-coding downstream 555487 1383892 ~ 1385986 (+)
G8469 LOC107715522,LOC107681815,LOC108437516,LOC108267691 non-coding downstream 579246 1407651 ~ 1425295 (+)
LOC122360757 fam73b,miga2,miga1,LOC107599369,LOC107705989,LOC107675762,LOC107737175,LOC107661559,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 other upstream 342187 447162 ~ 457745 (+)
LOC122325097 fuz,LOC107708997,LOC107691039 other upstream 554568 241451 ~ 245364 (+)
G8167 NA other upstream 576565 200092 ~ 223367 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other downstream 569119 1397524 ~ 1408721 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other downstream 716368 1544773 ~ 1559774 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other downstream 1074662 1903067 ~ 1910679 (+)
arl14 arl14,LOC107722413,LOC107719289 other downstream 1105107 1933512 ~ 1936759 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other downstream 1350361 2178766 ~ 2191448 (+)

Expression


Co-expression Network