ccdc39 (ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623)


Basic Information

Item Value
gene id ccdc39
gene name ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1397524 ~ 1408721 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU12694
ACCTGAAGAGCCACTCGATGTTTATTCAGATACGTTCCTCCTAAAGGATAACCAACATGGAGAAAGCTTGCGTCCTGTTTGTtggatttctgtttttttcttttggacaATCGACCTCTACCGTTGCTCCCACAATATCAGAAACAACATCAACTCCAGACATCTGGACAATGACTTCTTCACCATCGACACAGCAGCTCGGCTCTTCAGTTATTACTGGCTTGAGAATAAATGTCAAATCTCTGGTTGATCTGTCTATGAACTCACCTGAGATGGAGCGGCTTGTACGCCAgatTGAAAATTTCATTCCTTCTCAACACAAAGCAACAACGTCTATTACTGTGAGAAGAATCCAGAAAGGCTCCAGCTCTTTTTaggaatattaatattgtaatctagtattcatattttagtaaGGTCAGCTAAACCGTCACGACTATGTTATACTTCTTTGTGTAGTTTAAACAGAGCGCATACATacgatttattttctttgttcatAAAGTACTCTGAATCAGCAGCAGTGTCAAGGCACAACTTTAAGCTTAATTGCTGTTAATTAAATACTATTAAGTCTTTTTTGCCATGATAACtttgctttagttttatttatatagcctaTTCCATGTGTAACAATTGGACTATACCCAATcagaaaacataaatgtttacaaatatataagAAACATGTGTTTTTTCTCCAATAAAGACAGTTATGTGTCCTCAATCAGGCAAA
>XM_043254436.1
CGTTCCTAAATGACTGGTCGGCATAACATCGCGGAACCTTTTATGTTTTATCCATAAACGTCTCTGAAACAGCAAAATGTCTAACTCCCTGTTAGCAGAGGTTGGATGGGACGCGGGGTTTGCCATCCCTGTAGCTGACAGAGAAAATAAAGCGTTAGAGGAGGAGCTTCAGAAGAAGCAAAAAGAGCAATTAAATCtcgaaaacaaaataaataaaaacaaggatGTCATAAGCGCTCTAACCGAACACCTCAAAAATCTAAGACAAGAGGTTTCTCACACTCAGGCATTGTGCAAAGCCAGAGAGAAGGAGACCGAATCAGAGGTGCATTTCAGAGCCCTggcggagagagagacaggccgCTTGAAGCAGGAGATCAGTCAGCTGGAGAATCAACTGAAAACGCTGAATGAGAAGAAGAACGCACAAGAGAACAGCGTCTTTAAAGCCACCCAGAAACTTGACGAACTGAAGAATCGGCTGAACTGGGATCAGCAGACCCTGGAGGCCTGGCTGCAGGAGTCAGCTCACAAGGATGAAGACACCATGGCCATCATCAAGTACGCCAAGCAGGACGAAAGCAAGATTCGAGAGCTGACGCTGAACATTGAGAAACTGACTCTTGAAGCCAACCAGAAGAGAAAAACCTTGGACAGCGAAGTGACTGAGAGTGTTACAGCACAGATCGCTCTTGACAAGACAGCCGAGAGCTTTCGTCAGGCTCACATTGAGAGACAAGAGATGATCAGCCAGTGGGAGAACACCATTgaacaaatgagaaaaagagaccAGGAGATACAGCAGTGTGCCATGTTGCAGGCAGAGGTGAATGAAGTGATTAGAGAGAAGAATGATGTGCTCAAGGAGAGGAAGGACTTCATGGAGCGTGAGATAGAGAACAATAAGGAGCTGGAGAGGAATATAAGCACGGCTGAACGTCAGGCGCTTCGACTCAGGCAGCAGCTTCAGGAAGAGGAGAGGAACCAAAGACGTCTGCAGGATGAGGTGGAAGTTCTGAAGGGAACTTTAGACCGAACAGCCACAGATGTGGAGACCACCAGATCTCAGTTAACCAGCATGAAAAAGGACATCCAGGACAAAATAGCAAAAGTTGAAGAGGCAAAGCTGCATAACTCTGCTCTGAAAGAGAAGCTGCGGTTGGTGATGGAGGCAGTGCTGGATGGTGAAGAACAAGCAGAACAGATGGAGCAACTGCGTAAAGAACAGGAACAGAACATCAAAGAGATAGATGCTCAGCTCCTCCGGCAAAGAGAGCTCATGTTCAGAAAGAGTCAGGAGTTGCAGGGAATGCGTGATAAGGAGAAGAACATCACGGCTGAGATCTGTGCCACCCGAGTCGCTATCTCCAACCTAGATAGCAGACTCAGCAAACTGGACCAGAACCTGCTCAAACAGCAGATGATCATCTCCAACCAGGACTTTCAGATCCAGATGCTGGAGAGGAAGACTTCACACTTGCAGGGGAAGGTGAACACAGAAGAGAAGGAAGCTCTGGAGAAGAAGGCCTCTGATCTGGAAGAAGCTCtagaggagaagaagagaacaGCCACCACCCTCACAACACAGCTGAAGAAACTCCAGGATGATATCCGCTGCGTTAGAAAAGACACAGAGAAGGTCGGAACAGAAAAAAGAGAACTGACCTCCAAGATCCATGAGCTGGAACTCTTCATTGACAACTCTGAGAAAGATCAGAAGAAACTCAGGCTCAAAAAACAGGACAGCATGGTGGAGAGAGGTCTCCTGAAGATGGAGGTGCAGCGTCTGAGAGATCTGTTGTACGACCGAGCAGATggagtgctgagcctggagaaGAGACGTCTGCAGCTTCAGACGGccatgaaagagagagaggaggagatcCGTGTACACAGAGAGATGCTTACTAAACAGATCAAGCTCACTGAACAAGAGAGACAAGGGCTCAGTGCTGCTGTGAACGAGAGACTGTTCAAAATTGACAAAATGAGGAAGAGGTACGAGATCCTGACTGTTTCTTTGGCTGCACCAGAGGGAGAAGAGGAGAAATCCCAGGCCTACTTCATTATAAGGGCAGCTCAAGAGAAAGAAGAACTCCAGCGGCAAGGGGATGATTTGGACGCCAAGATCCGCAAGACTGAGAAAGAGATCCACGCGTTGGAGAACACTCTGCAGGTCGTCAACAACTGCAATACAACCTATCGTAAAGCTCTGACCAAAGTCACAGAGTCCAGCCCTGCGCATCAGGAGAAACTGAAGCTGGAGGAGCAGAGGCGAGCAGCTGAGGAGAAATACAAATACAAGAAACGACAAATCCGAGAACTGCAGGAGGACATTGAAAGCATGTCCCACACGTTGGAGGGTCTTCTTCATGAGGAAGCAGTTCAGAATGAGAGCGTTGAGAGGTCTCAAGCCCATGTGCTCTCTCTCAACAAAGACATTCTCTCTCAGGAGGAGAAACTCAACAGAGCCATCAAACAGTGTGCCAAGTATACCAGGGAAATCCGTTCCGCTAAAAACACCGGTGAGAAGACCTTTGAGGAACGTGACATAGAGCTACGAGAACTcagagaattaaataaaagcgtAAATAAGATGCTCCTGGAAACCATGGAGGAGAACCCAGACCTATCATCTGCGCTGCAGATACGTTTTATGCAGGCTGGTCTGTCCCTTCCCTCTCCCGCTTCCACTCCATCCAGCCGTCTGAGCTCAAAGACCAACTCAGCCCGCAGTTCTGCTTCACTCCATCGAGCCTCAAACCCTTCAACCAGCAGCAGTCCCAGAAACCAGTCTGTCACGTCCCCTGCGGTGAAGACGCTGGATCTGGGTTTGGGTCTCTCTGTCACGTCTCCTCAAGGGTCTCGGCCGCCCAGCtctggcagcagcagcaggagcagCAAGTGCAAAAGCCCTTAGAACCAGACGGCGGTTTCTATGAAGAACTGTGAAGTTATTAAGTCTAATTATACCAGTACCACCTTCGTTGATATTCCAGCTGTAACGCAATTCAGTCATTCAAttcagtgtttctttaaaacagcttttatgttttcattttcctAGGAATTCGTTTCTAGGAGAAGTATGACTTTTAGACTTTTTTCATGTTAGACATTTTTCGTGAAAACTCTTGCGGTTGGAAGTACAGACACAgggcttgttttattttactactaCTTTTTAACTTTGATTGTGTTACATGCAGCAACaagaaagaaacaataaaacccTACATTCATGTGTGCTTTGGCCCGTGATCAATCAGAGGTATCAggtgaagggaaaaaaaaatctgaataactTCCGTCTGCTGCCCATTGTGTTTGTGCCGTCAGTTCTTGGGTGTGTTCAGCCTCATTATTCATGAAAACCCATGAGACGGTTCAATCAACGCCCTCAGACAGCCTAGAAACCTGAAGAGCCACTCGATGTTTATTCAGATACGTTCCTCCTAAAGGATAACCAACATGGAGAAAGCTTGCGTCCTGTTTGTtggatttctgtttttttcttttggacaATCGACCTCTACCGTTGCTCCCACAATATCAGAAACAACATCAACTCCAGACATCTGGACAATGACTTCTTCACCATCGACACAGCAGCTCGGCTCTTCAGTTATTACTGGCTTGAGAATAAATGTCAAATCTCTGGTTGATCTGTCTATGAACTCACCTGAGATGGAGCGGCTTGTACGCCAgatTGAAAATTTCATTCCTTCTCAACACAAAGCAACAACGTCTATTACTGTGAGAAGAATCCAGAAAGGCTCCAGCTCTTTTTaggaatattaatattgtaatctagtattcatattttagtaaGGTCAGCTAAACCGTCACGACTATGTTATACTTCTTTGTGTAGTTTAAACAGAGCGCATACATacgatttattttctttgttcatAAAGTACTCTGAATCAGCAGCAGTGTCAAGGCACAACTTTAAGCTTAATTGCTGTTAATTAAATACTATTAAGTCTTTTTTGCCATGATAACtttgctttagttttatttatatagcctaTTCCATGTGTAACAATTGGACTATACCCAATcagaaaacataaatgtttacaaatatataagAAACATGTGTTTTTTCTCCAATAAAGACAGTTATGTGTCCTCAATCAGGCAAAAGTCTTGTCAA

Function

symbol description
ccdc39 Involved in cilium-dependent cell motility and epithelial cilium movement involved in determination of left/right asymmetry. Acts upstream of or within determination of left/right symmetry. Located in extracellular region. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 14. Orthologous to human CCDC39 (coiled-coil domain containing 39).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007368 determination of left/right symmetry biological_process

KEGG:

id description
K23729 CCDC39; coiled-coil domain-containing protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
TU12694 False 736 lncRNA 0.36 4 1406988 1408710
XM_043254436.1 True 4162 mRNA 0.46 23 1397524 1408721

Neighbor

gene id symbol gene type direction distance location
dcun1d1 dcun1d1,LOC107681826,LOC107568628,LOC107722250,LOC107708830,LOC105889496 coding upstream 1346 1390712 ~ 1396178 (+)
b3gnt5b LOC107593805,LOC107709072,LOC107656860,LOC107681747,LOC107568627,LOC107722519 coding upstream 16054 1375058 ~ 1381470 (+)
tbl1xr1b tbl1xr1b,LOC107656866,LOC108437519,LOC107568629,LOC103032574,LOC108267995,LOC107722285,LOC106530177,LOC105889501 coding upstream 25608 1356240 ~ 1371916 (+)
kcnmb3 LOC107708981,LOC107599858,LOC107681773 coding upstream 52511 1340743 ~ 1345013 (+)
ephb3a ephb3a,LOC107681809,LOC107599837,LOC107722542,LOC107708817,LOC107656865,LOC108437521,LOC108267069,LOC105889460,LOC102226142 coding upstream 88705 1279837 ~ 1308819 (+)
LOC122360630 LOC107681692 coding downstream 32217 1440938 ~ 1447899 (+)
asip2b agrp2,LOC107593895,LOC107715506,LOC107701329,LOC107681750,LOC107722688,LOC107568624 coding downstream 60339 1469060 ~ 1472849 (+)
zgc:153115 zgc:153115,LOC107722210,LOC107701340,LOC107681793,LOC105889440,LOC105030379,LOC106568757 coding downstream 108976 1517697 ~ 1525574 (+)
extl2 extl2,LOC107722455 coding downstream 154284 1563005 ~ 1568542 (+)
LOC122361145 dbt,LOC107681723,LOC107715513,LOC107593857,LOC108411488 coding downstream 183272 1591993 ~ 1598263 (+)
G8449 NA non-coding upstream 11538 1383892 ~ 1385986 (+)
G8451 NA non-coding upstream 15201 1382119 ~ 1382323 (+)
G8393 dia1a,LOC107599840,LOC107681802,LOC107722302,LOC107565821,LOC107679841 non-coding upstream 194510 1197427 ~ 1203014 (+)
G8394 NA non-coding upstream 211492 1180130 ~ 1186032 (+)
G8222 dnajb4,LOC107681825,LOC107599850,LOC107708915,LOC107566472,LOC107751861,LOC107690981 non-coding upstream 614779 680687 ~ 782745 (+)
G8508 NA non-coding downstream 190325 1599046 ~ 1673755 (+)
G8519 nos1apb,LOC107715504,LOC107593855,LOC107681742,LOC107560777,LOC107701337 non-coding downstream 223595 1632316 ~ 1636622 (+)
G8556 NA non-coding downstream 272706 1681427 ~ 1683093 (+)
G8585 LOC107701323,LOC107593893,LOC107719279,LOC107560771,LOC107722646 non-coding downstream 509985 1918706 ~ 1919313 (+)
G8586 NA non-coding downstream 510691 1919412 ~ 1922223 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other upstream 569119 799932 ~ 828405 (+)
LOC122360757 fam73b,miga2,miga1,LOC107599369,LOC107705989,LOC107675762,LOC107737175,LOC107661559,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 other upstream 939779 447162 ~ 457745 (+)
LOC122325097 fuz,LOC107708997,LOC107691039 other upstream 1152160 241451 ~ 245364 (+)
G8167 NA other upstream 1174157 200092 ~ 223367 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other downstream 136052 1544773 ~ 1559774 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other downstream 494346 1903067 ~ 1910679 (+)
arl14 arl14,LOC107722413,LOC107719289 other downstream 524791 1933512 ~ 1936759 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other downstream 770045 2178766 ~ 2191448 (+)
sgip1b sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747 other downstream 861958 2270679 ~ 2288216 (+)

Expression


Co-expression Network