LOC122360854 (si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183)


Basic Information

Item Value
gene id LOC122360854
gene name si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1903067 ~ 1910679 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU12881
gtGGAAAAAGTGCGGTGCTGACAGCTTTGATTGTAGCCCTGGGAGGTAAAGCTCACACCACGAACAGAGGCTCCTCTCTCAAAGGCTTTGTGAAGGAAGGAGAGAGTTCTGCGGATGTGTCCATCACCCTGAAGAACAGGGGTCGTGATGCGTATAAGCCAGAGACGTTCGGGAAGTCCATCATCATAGATCTTCGTATCTCCAGTGAGGGAATACGGACATATAAACTAAGAAGTAAAACAGGTCAGTTAGTGTCGTCAAAAAAGGAGGAGCTGATCTCCATTTTGGATCACTTTAACATCCAGGTGGACAATCCGGTCTCCATCCTAACTCAGGAAATGAGTAAACACTTCCTCCACTCCAAAGGAGAGGGCGACAAATATAAAtgcCTGTGAAGACCACAAGAAGGACCGGGTCATTAAATACCAGCTGTATACAGAGCGCATCAGTGAATGCTGTTGGCAACTTAAAGCAGAGCTGGCAGAATTGCAAAATGTTGAGGAACCTCAGTCAGAAGACTTGAAACCTTTGGAAGAGGAACTGGAGGAGCTCAGCAGCCGAATAAGTGAGTGTCGAGTGGAATCTGAAGCTGCACAGAATCAGGTGCTGACATACAAGAAAGAATATGAGGAGGCTGAGCGGCTCTCCCGGCAGCAGAGGGAAGCTTTTAACAGCATCGCAGAGGAAGCTGACTTTTTTCAGATAcagtatttacttatttttagtaTGTTCAATGATAAGGATTGAGTCTGTATGTGAATTTTAATCCACGCTACGTGAACATTTTCTTGTAAACTGGAACCAATTCAAAACCAGAACCggactaaaactgaaatgataaatttgtaataaattgtgcagt
>XM_043261705.1
ATGCCAGgtGGAAAAAGTGCGGTGCTGACAGCTTTGATTGTAGCCCTGGGAGGTAAAGCTCACACCACGAACAGAGGCTCCTCTCTCAAAGGCTTTGTGAAGGAAGGAGAGAGTTCTGCGGATGTGTCCATCACCCTGAAGAACAGGGGTCGTGATGCGTATAAGCCAGAGACGTTCGGGAAGTCCATCATCATAGATCTTCGTATCTCCAGTGAGGGAATACGGACATATAAACTAAGAAGTAAAACAGGTCAGTTAGTGTCGTCAAAAAAGGAGGAGCTGATCTCCATTTTGGATCACTTTAACATCCAGGTGGACAATCCGGTCTCCATCCTAACTCAGGAAATGAGTAAACACTTCCTCCACTCCAAAGGAGAGGGCGACAAATATAAAtgcCTGTGAAGACCACAAGAAGGACCGGGTCATTAAATACCAGCTGTATACAGAGCGCATCAGTGTAAATATTACTAAACGTgctataatatgtaaatatggtCACCCCTTGCAGAATCTGTGAAAAATCGTAACAAAAGAAGAgaaattatacaaaatgcatgttgttttttttatttagtactgtcctgagtaggatatttcacataaaagatgtttaaatacagtccacaagaaaaaaaaaatagtaaaaatgattaaaatgatccTTCTTAAAAGTTTGGGAACTGTTGGTTGttaatacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgttaacCTGAATGAT

Function

symbol description
si:dkey-119f1.1 Predicted to enable damaged DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to be located in chromosome. Predicted to be part of Smc5-Smc6 complex. Predicted to be active in nucleus and site of double-strand break. Orthologous to human SMC6 (structural maintenance of chromosomes 6).

NR:

description
PREDICTED: structural maintenance of chromosomes protein 6-like

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0007155 cell adhesion biological_process
GO:0005604 basement membrane cellular_component
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12881 True 862 lncRNA 0.49 7 1905366 1910679
XM_043261705.1 False 767 mRNA 0.41 6 1903067 1909462

Neighbor

gene id symbol gene type direction distance location
si:dkey-119f1.1 si:dkey-119f1.1,LOC107593797,LOC107701334,LOC107722422,LOC107560764 coding upstream 1320 1880691 ~ 1901747 (+)
rgs13 LOC107715509,LOC107593894,LOC107681737,LOC107560784,LOC107722654,LOC107701324 coding upstream 26181 1874022 ~ 1876886 (+)
rgs1 LOC107681696,LOC107560781,LOC107701325,LOC107722662 coding upstream 35876 1864505 ~ 1867191 (+)
rgs18 rgs18,LOC107681733,LOC107715502,LOC107701327,LOC107560778,LOC107722673 coding upstream 47832 1848086 ~ 1855235 (+)
LOC122361145 dbt,LOC107681723,LOC107715513,LOC107593857,LOC108411488 coding upstream 304804 1591993 ~ 1598263 (+)
ppm1la ppm1l,ppm1la,LOC107681725,LOC107722109,LOC107701333,LOC100694563,LOC103365160 coding downstream 12373 1923052 ~ 1932630 (+)
ipo13a si:ch73-182a11.2,LOC107593890,LOC107681711,LOC107560786,LOC107722396 coding downstream 46497 1957176 ~ 1971483 (+)
prdx1 prdx1,LOC107577377,LOC107681736,LOC107560788,LOC108267618 coding downstream 72562 1983241 ~ 1987091 (+)
zte38 zte38,LOC107681728,LOC107593889,LOC107719267,LOC107722624 coding downstream 76650 1987329 ~ 1991484 (+)
uck2b uck2b,LOC107593786,LOC107719266,LOC107681732,LOC107560789,LOC107722061 coding downstream 86759 1997438 ~ 2001435 (+)
G8556 NA non-coding upstream 219974 1681427 ~ 1683093 (+)
G8508 NA non-coding upstream 229312 1599046 ~ 1673755 (+)
G8519 nos1apb,LOC107715504,LOC107593855,LOC107681742,LOC107560777,LOC107701337 non-coding upstream 266445 1632316 ~ 1636622 (+)
G8469 LOC107715522,LOC107681815,LOC108437516,LOC108267691 non-coding upstream 477772 1407651 ~ 1425295 (+)
G8449 NA non-coding upstream 517081 1383892 ~ 1385986 (+)
G8585 LOC107701323,LOC107593893,LOC107719279,LOC107560771,LOC107722646 non-coding downstream 8027 1918706 ~ 1919313 (+)
G8586 NA non-coding downstream 8733 1919412 ~ 1922223 (+)
LOC122362698 NA non-coding downstream 15181 1925860 ~ 1929567 (+)
LOC122355709 LOC107593853,LOC107719278,LOC107681699 non-coding downstream 36449 1947128 ~ 1948362 (+)
G8670 tmem125b,LOC107681734,LOC107719290,LOC107593887 non-coding downstream 142632 2053311 ~ 2055730 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other upstream 343293 1544773 ~ 1559774 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other upstream 494346 1397524 ~ 1408721 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other upstream 1074662 799932 ~ 828405 (+)
LOC122360757 fam73b,miga2,miga1,LOC107599369,LOC107705989,LOC107675762,LOC107737175,LOC107661559,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 other upstream 1445322 447162 ~ 457745 (+)
LOC122325097 fuz,LOC107708997,LOC107691039 other upstream 1657703 241451 ~ 245364 (+)
arl14 arl14,LOC107722413,LOC107719289 other downstream 22833 1933512 ~ 1936759 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other downstream 268087 2178766 ~ 2191448 (+)
sgip1b sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747 other downstream 360000 2270679 ~ 2288216 (+)
G8725 sec22ba,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393 other downstream 488275 2398954 ~ 2401745 (+)
LOC122358652 slc35a3b,LOC107559354,LOC107593843,LOC107671667,LOC107709347 other downstream 496063 2406742 ~ 2419955 (+)

Expression


Co-expression Network