G8623 (ppm1la,ppm1l,LOC107681725,LOC107722109,LOC107701333,LOC101065476,LOC106534897)


Basic Information

Item Value
gene id G8623
gene name ppm1la,ppm1l,LOC107681725,LOC107722109,LOC107701333,LOC101065476,LOC106534897
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1923284 ~ 1929991 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU12947
CTGCTTCATCGTGGGTGGCAGAGAACTTGTCCACCATGTCCCGGTCCACACTCAGAATGCGCTGCTCTAGGATGGAGGGGTAGGAGAGAGGACTGTCTTTCTTTTCTCGCTCGTAGGCCTGCAGCTGCTGTTTCAGGGTCTCGGGCAGGTGGGCCTTCACATAATCAGCGGCTGCCTGCGGGAAACAACGAAGAACTCACTCTTCAGGGTTTATAATTCACGTTCATTCATGAAGTTCATTGGGATTTCGACTGATAGCTGATAGGCGTTAATAAAGTGGAAAACCTttaagacaaagaaagaaagaaaggcagaCGTGAGCTGCTCTCATGAAAACACGTCAAAagaattcatattttaagtaaagattTGATGACAATTGGCATTACCGTAATTAGGGCTGCTCAATTATGGTATGACGATCTTAAAAAGTACTAAAGAAtcatatttagtatataaattTCAAAATTGTGCGCAAAAATAgaacactttaattacattaagtCTGCTTGTTTTTTACCTGGgaatatacagtattttcacGATATTGAAATTTAGTGGCAAAAAGGTGCTGCcataatacagtataaatcGTTTAATACCTTTTGttcttttacaaaaatatataaacatttaaatataataaagcaatgcacaaaaaatgttttttacaccGGTTAAAGTGAAAAAGAATTTAAAGATCGATAGGTATTATTTCACGGTAAGATATCATTAGTTAACCcagaataataaagaatttaaaaataaatagcccACTGGGactaaatatgaatgtttttggcGCCGTGATGAACACCACTGCggatatttaaatgtgaaagtaGCGCAGTGTTTGTGATAATGGCTGTCCTCATTCGTGCTCGTTTACATCAGAGTGCACGCGTAAATACTTCTTTTCCGTATTTTAAAGGTGCCCGTGATAACGATACCGTGCCTATTCTTTATAGCGATGAATCACATTAAAGAATACCGGCACGTGTCTGGCTGTATTACACTCCTGTTGTATTTTTCCCCCCCATCAACAATACAATTATTGGGAGCTGAAAACATTAAACTGTCATTCATTGCTCAGCCCTTACCATAATGCATcatgaattttcatttatgtaaatttttaatgtttttacaatttcCATTTGTTCTTAATGGAGATTCTCATTAATGCATTACAGCACAACAAATCCTACATACAATACACTTCAGGTTATGTGCTTCCTCGTTCCAGTAATGATAATGGGATTTGTGCGTTCTGAAAATGAGGAAAGGGGAAAATCCGCAAAACTCAGGAAATGCACATCGCTTCATTTTCTTAATGCAAAACCTCATTCCCCGTTTTGATCTGGGGTGAAACCCGACAGGAACGTTATTGATGACATATTCATCCACGTATTAAAAATACGCTAGTTTCAGAAATTCAGACTCAACAGAGGTTTACTTAATTAGGTTTTAGCTGTTAGTTGACACTAAAAATTAAATCCGTCGTCACTTATTCACctacaaacctttttttcttcttctgcagaacatgaTGTGACTATCGTATGGTTATCATATCACGAACGgtttcttattttgtgttcggTAGAAGAAAGCACGTCACGTAGGCATGGAGTGACAAAAAGGCTAGAACGAtcgtttttgggtgagctgtccctttaaaggAGGCCTAAGAGCTCTAGCCAGATGGAGTTTGCAGCAGAATACAGATGAAGGGACAGAAAGTCTCTAGAGAGCGAGTGCCCTTTCCAAACACAGCCAGATCACCAAAACATAGCGAGTCAAAAGAGCGTGATTTCACTTCCTCGTCGTCGCTCAGGATGGTCTGGATCCTTTCAGCAGCTCACACTACGGCCTTGTGCGTGTTTTCAACTTTAAGCCTTTGCCAGTGACTCAGCAATGCCACGCTATAAATACAATGATGAAACCAGAGAAGCAAACATAATACCTGTCTGCCAAGAGAACTGCTGCAGTGTCTTTCAAAGCCACTTCCCGGGCAACAGCGAGTCGCTGCTTTTCGGGAAAAGACACGGAGGAGCCTCCCGATGAAGACGATGCATTATTTACGCAGAAGCATCGCTCATGCGGAACACTTACAGAATAAGCAGATATAGCTCAGGGTCACTTTGCGCACGGCAGTGATTTTAAAACCGTAAATAGCACACAGTCGAGCTCAGATCGGAGATAGGAGACCGCTGACTCCAAACCGTAAGAACAAACTCTTGATTATCTAAAAGTATTGTCTGCTTAGCTCGAATTCGGTGTGTTACCGTTTGAAAAGGCTGGAGCAGCTTTCTCGAACACTATTAGTCAATAACAATTAAAGTCATTAATTGAGCTCCTGACAACGGCGCAATACTCTGCGGGCGACACAATCTGAATTATTTAAAGTATGTTGATCGTTGTGTCTCAGGAACAAAGACAGTGGGGCGGAGGTGACCCACAGTGACCTCTATCCACTCAAGACCCTCCCACAGCAAACACACTACAGTCACGCGTCCAGTTGACTTGTTCACACACCAGCACAATGAGGCCTTTATTACTGCCGTTAAGCACCTGTGTATTCCTGATACATCCCATGAAATATCTAAATGATtctattttgttctttaaaaatatttttttttttttttttttttttttttttaaggtaaagctggattttcagcatcattaatccagtctacatttttttttgattgagaaagaagaaaagctttttaattGGGCTATTCTACattaaaaggcaaaaatataaatcaaatacaggAAAATAATCGAGACCTAGACCTATCCGGTAGCAATAAAACCTCAAGCACTGTTCTATTATTGAGTGGCTGAGTCAGTAATCCGACATTAAAATTTTAGTTTAGGCAATAATTATCATGACCTTTGCATTTCACAACCAGAAAAATCTGCCAGTATGCAGATAGCACTTTGCCAAGCGTACATGTACAGATAAGACTCAATGTCAGGAAGTTTGGGTCAGCAAACATTTATGGGAGGAGATAGGTAGGGTAGATTAAAATGCTCCAACCTTCGGCCCCAGTAAAAGACCTTTTAATCTATTAACTGCTTGAAAAGCAGCAGGGCCCCTGGACATTTGTATAAACAAATAGCACTATAAATAGAGTTCGGGCATTCCATATATGATCACGAGAGCCAGAAACAGCCGACTTGAATGCTGAGGAAAATAGCTGATCTGCAAAGTCCAAATTCGAAGAGATTCCCGAACCGTTTTAATAGGTTCTGTCAGATCTCTTTAAACCGCGCGAGCTGTTCGTTGCTTGAGAGCATCTCTGAAGGCATTCACACATTAAGCCAACCAGCATTCATCTGCTTCACCGCACGGTGAAGAAGATAAAATGAACATCTGTCTGTGCTCCACACAGGCTGGGAAATCAGATCGGCCGGAGCAGATGTCTGGGGAGGGGGGTGGACCGACTGAATGCCCCAGACAAGTATCACGGGAATCTCAATTGGCCGCATTAGAGTTCTCATATAACCATTACAAAGGCAGTTTGTGAAAATCTCAACGTTCGGGTCATATTATTCAgaagaaatgcacaaaaaaaaaaacagaataagttatcatttttcagttttagcaattttactattatagttttatcGAACTACAATGGCCACAAAATTGTCTTAcctatatatatgctttttgttttggaaaatagtcttaaagggacagtccatGCATTACTTACACTcctgttgttccaaatctgtatgacctTCTTTTTCCCCATCCAACACAAAAGCCCATTCACTCATTGTATGGAGTAAAATTACACCACGCGTAAAAGCATAAGGTTACAGAGACTTCGAGAGAGAAATCTTCAGcgaactatttattaaaaatgtatttaaaaacactctCGCTTTCATACTGCTACTGCGGCACCTGTTCGGGGCTCCGCTTTTATACTTTCAGGGTGATTTGTTTACGTTTTGGAGCTTTTCATCTCCAGTCCCCATCTGCGTTCAGCAATTAAAGAACGTCCGAAATGTACTTCATAATCTTCCCTTTTAATAGAGTGAGTAATACTGGTtagaaacaacatgagggtgagtaacaAACCCTTTTTTTGCACTGACTGCCGCTTTGAAGGTCGCCCCAGCTAACACGGAGCGCTCCGTTAATGTTTGGTTATTTTGAAAACCAACTTCCAACGTTCTACGAACGTTCTCTATTTTCAGGATTCCACCTTTTCGCTGTAAACAAGCCGTTGGCGAAGCGCTAAGCGGAGCGCGTTCAGCTTTCGCCGCGACTCGAGCTCTCATCAGCACCCACGCTTCTTACCTCACCGCCGTGGCCGTCAAAAATGGCAAAGATCGAAGGGTGGCTCCTGTTCACCAGGTCGGTAAGCACCTCGAAGCGGTCCTCCATGTGGTCTCTGCGGCCCTGGATCGAGTACACCGCGACGTTGTTGTTCTTGAACTCCCACGTCTTGGAGAACTCCGCGTCCAGCACGTCCAGACCGCCGAGTCTGTCGTTCATCATCATCTCCGCCACTTTCCCCTTCACCATCTTCACGGCATCCCGGCTGGACTTGACGATGGTCTTCACCTCGTCCGTGTGGAAGAAGTAACTCCAAAGGGCCAAGCttatacataacaaaaacaagGTCTCTGGCCTGAGCAAGAAATAACGCATGATGCGACCCAAAAGAGACAAAAGCGTCATTGTGTCTCCTATCATCACACGCTCGGGGACTGAAGTATGGGCTTCGAATTACTTCATTAGACCGATGTGAAAGCCCATCTGCAGCCCGACGTGTTTGATCGCCCCCCGAAATCTCGAATGGCCGGTGGTTATGTTATAAGCCGCAGATCGAGCGAGTTCCCGGCGCTTTCAGCTGCAGTCTGGCTCTAGCGCCCTACCGACGCGCTGCATATAACCGCACAGATCCCATTACCCCCAACGACAGCGAACCCATTCCCTCCTATAAAGCCATCTGCGGCGCTAGCTCGCGCTTTCGACGAGCCTCTGCTCAAAAACGGCCCCGTTATTTACTCGCTCGCGCGCGCCGCGGACGGTTTTGAAGCACTTTATAGCGCCGATTCGTCGACGCACACGCCGCCGCTGCCTGGCGTCCTCCGCGCGCTGCGTGCGTGACTGACTGCAGCGCCTGGCGG

Function

symbol description
ppm1la Predicted to enable metal ion binding activity and protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Orthologous to human PPM1L (protein phosphatase, Mg2+/Mn2+ dependent 1L).
ppm1l Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within MAPK cascade and transmembrane receptor protein serine/threonine kinase signaling pathway. Located in extracellular exosome.

NR:

description
PREDICTED: protein phosphatase 1L

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12947 True 5172 lncRNA 0.43 2 1923284 1929991

Neighbor

gene id symbol gene type direction distance location
otol1a otol1a,LOC107560771,LOC107722646,LOC107701323,LOC107593893,LOC107719279 coding downstream 1067 1914580 ~ 1922217 (-)
brinp3b brinp3b,LOC107681713,LOC107715511,LOC107701336,LOC107722123,LOC107560776,LOC108428887 coding downstream 217465 1683899 ~ 1705819 (-)
rgs5b rgs5b,LOC107577006,LOC107701328,LOC107722680,LOC107560779,LOC107715503 coding downstream 273446 1648559 ~ 1649838 (-)
nos1apb nos1apb,LOC107715504,LOC107681742,LOC107560777,LOC107701337,LOC107722434 coding downstream 281269 1632316 ~ 1642015 (-)
ddr2b LOC107715505 coding downstream 295106 1617235 ~ 1628178 (-)
zp3b LOC107719269,LOC107681720,LOC107593792 coding upstream 5920 1935911 ~ 1938876 (-)
si:ch73-344o19.1 LOC107719287,LOC107681731,LOC107722404 coding upstream 21120 1951111 ~ 1956867 (-)
fzr1b fzr1b,LOC107701330,LOC107719268,LOC107593790,LOC107722096 coding upstream 42028 1972019 ~ 1979198 (-)
aldh9a1b aldh9a1,aldh9a1b,LOC107681718,LOC107593789,LOC108430735 coding upstream 61594 1991585 ~ 1996907 (-)
LOC122357078 cfap57 coding upstream 126576 2056567 ~ 2070527 (-)
G8599 NA non-coding downstream 46346 1840172 ~ 1876938 (-)
G8489 LOC107696015,LOC107710542,LOC107721879 non-coding downstream 460770 1462060 ~ 1462514 (-)
G8479 NA non-coding downstream 523556 1399408 ~ 1399728 (-)
G8443 NA non-coding downstream 590180 1332845 ~ 1333104 (-)
G8439 LOC107722542 non-coding downstream 612993 1309945 ~ 1310291 (-)
G8622 ppm1l,LOC107560765,LOC107722109,LOC107681725,LOC107701312,LOC107701333 non-coding upstream 633 1930624 ~ 1932631 (-)
G8630 NA non-coding upstream 20200 1950191 ~ 1950400 (-)
G8640 NA non-coding upstream 54118 1984109 ~ 1987070 (-)
G8642 NA non-coding upstream 58856 1988847 ~ 1989075 (-)
G8643 zte38,LOC107681728,LOC107593889,LOC107719267,LOC107722624 non-coding upstream 60408 1990399 ~ 1990635 (-)
colgalt2a LOC107593860,LOC107681694,LOC107715500 other downstream 390727 1525748 ~ 1532557 (-)
mfsd8l2 si:ch211-38m6.6,LOC107681768,LOC107656858,LOC107565819,LOC107722537,LOC107599859,LOC108437504,LOC105026921 other downstream 585286 1331430 ~ 1337998 (-)
dipk2aa dia1a,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108437525,LOC108268022 other downstream 720297 1179945 ~ 1202987 (-)
LOC122325167 NA other downstream 1319340 119350 ~ 603944 (-)
slc1a7a slc1a7a,slc1a7,LOC107722044,LOC107671767,LOC107681716,LOC107593788 other upstream 86417 2016408 ~ 2038705 (-)
tmem125b tmem125b,LOC107719275,LOC107681700,LOC107681734,LOC107719290,LOC107593887 other upstream 120439 2050430 ~ 2055709 (-)
LOC122355284 NA other upstream 145307 2075298 ~ 2128540 (-)
insl5b LOC107719258,LOC107593780 other upstream 368805 2298796 ~ 2301360 (-)
G8880 bcl6ab,LOC107593779,LOC107719257,LOC107559367,LOC107709352,LOC107681786,LOC107671762 other upstream 509370 2439361 ~ 2441713 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009322 ppm1l,LOC106580962,LOC101065476 coding CM030126.1 CM030126.1 33001428 ~ 33004290 (-)