sgip1b (sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747)


Basic Information

Item Value
gene id sgip1b
gene name sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2270679 ~ 2288216 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU13062
GTCCCAGCAGACCTTCTCAGCTGGCAGTGCAGTTCACCAGTGAGGGCAGCACTCTGTCTGGATGCGATTTTCAACTCGTCGGTTCAGGCTACAGACTCTCTTTGgtcaaaaaaaggttttctgcAGGTAAATATCTGGCAGACAACTGACATGTAGGATGGACTGCGAGTGGGGGTGCTCTTTTGGCACTACAAAGActttggaaaaatgtttttattgaaatacagCACTCAAAATCTCACGTATAATGTCTGGTGTAGAATATCATCAGTGCGTTCTGTGGGTGTGT
>TU13065
CACACTCTCGTTCTCCGTTCATCAGCGGCTGTCCTCAGCATCCCCTCTGTGATGATGGCGTGCGTGGATGCTGCTGATGCGGCGGTGCCCGGGGCCTAACCCACCGGTTACCGGGAAACCCGAGAGACGAGGGCGCGAGGGGCCGGGCAGTATGAGCCTTTCCTTTAACGACCGGTTACCGGATCACTGCTGTATCTCGTGTCAGTTTGTTTGCTCGCGTGAAACCGAGGAATGAAGTGCTGCAACCATGATGCAAGGACTGAAAAAGCGTACCCGAAAGGCCTTCGGGATACGGAAGAAAGAAAAGGACAGTGACTCCACTGGATCCCCAGACAAAGAAAAATCTAAAAAAGCCAATGGTGCACCGAATGGTTTCTACGGTGAGATCGACTGGGATCGTTATAACTCTCCTGATGTTGACGATGAGGGTTACAGCGTTAAACCCGGAGAACAAGGAGGAAATATCCTTTCGGTCTGTGTTTGCATATTGACCTGTGCTGTTTCTTA
>XM_043257962.1
CCCACACTCTCGTTCTCCGTTCATCAGCGGCTGTCCTCAGCATCCCCTCTGTGATGATGGCGTGCGTGGATGCTGCTGATGCGGCGGTGCCCGGGGCCTAACCCACCGGTTACCGGGAAACCCGAGAGACGAGGGCGCGAGGGGCCGGGCAGTATGAGCCTTTCCTTTAACGACCGGTTACCGGATCACTGCTGTATCTCGTGTCAGTTTGTTTGCTCGCGTGAAACCGAGGAATGAAGTGCTGCAACCATGATGCAAGGACTGAAAAAGCGTACCCGAAAGGCCTTCGGGATACGGAAGAAAGAAAAGGACAGTGACTCCACTGGATCCCCAGACAAAGAAAAATCTAAAAAAGCCAATGGTGCACCGAATGGTTTCTACGGTGAGATCGACTGGGATCGTTATAACTCTCCTGATGTTGACGATGAGGGTTACAGCGTTAAACCCGGAGAACAAGGAGGAACAGCTCCAAAAGTCAAGACGTTCTTCTCCTCCAGTGAGTCggagggagaggaggagcaCGGAAAGAAATTTAAGATCAAGATCAAACCTTTGACAGCAAACAGTGGAAACTGTACAGTGTCTACTATGGATGAGCTGAAGGCCTCAGTGGGGACGCTGGCCATCTCTCCTTCTCCTCTGAGAAAGAGTCCGAGGCGAAGTCCGTGCCCGATGAAGCGAAACCTGTCAAATGAGGAGATCGCCAGACCACGACGATCTACTCCAACACCCACGACAACTCCAGGACCTGGTTCGGACCCGCCCAGagaaaacacaacagCGTTCTTCGGCCCACCGTTTGAGACCAATTTCGAAGCACACAACTCAGAAGTGTTCCCGGTTGAGCCGGAGCTCTGGTGTCAGTCCACTTCTCTCTCCACCTGTGTTCTCAGCAGATCTCTGCCCACTGGAGCTCCGCCTCCACTTCCTCCAAAGAACATTCCTGTGACCCCACCTGGACGCAGTTCTAGCTCTGTAGAGTCCTCCGgTTATTATAGTGTGGTTCCTAGCATCAGAGGAGAGGGATCAGCTTCGGCCTGTCAGGACGCCCCATTATCTGACCCATCCGGAGGGGCGTCTATGCCTGACTTGGACAGTGTTTTTGGGCCTGTGGAGACGCCCAGGTCTGCATCAGATGTGGTGCAGTGCAGCTGGGTGAGCTTCAGCGAAGGCTCTCCCGCCAGACCCCCTCCCCCAGACGAACCCGCCCCTTCTCCGCCTCTGTCTTCTTCCCCCACGGACTCGCCCCCAACCTCGCCCCTCAACCTGCCGCCTCCCGCCTCCCCTCCCCCCCACTCCATCCCGCCTCCAGATTcacctccaccacctccacccTCGGACTCTCCTCTGAGTCCTCCAGACCTCCCCTGCTGCTTTCAGCTCCCGGAGTCCGAGCTCACCCAAGAGTCCCCAATGACCCCCGCCAGCCCCGGACTGCCCTTCCCGCCAGCAGACCACCATCCTCATGGAGCCATACCTTCCCCTCTTACCTTGAGAGACGACAGCAGGAGAACCCCTGACCTGGTGGGCATGAGGGATGAGATTTCTGTGTTTGGCACATCACCCAAAGACCTCGCAGCAGGAAGCTTCAGAGGAACCCCACCTCCTCTGCCACCTCCTACTTACAGGAGTGTGGTGGGCTCCCCGGGGCCCGGCAGTGGGCCGTCGTCTCCCGCACGTGCCGGCACTCCGCTGTCCGCTGGGAGTCCGATCCCACCTCTACCACCAAGACCATCGTCACGACCTAAACTACCACCTGGAAAACCAAACCTAGCAGATCTGGCCCGACCCTTCAGCCCCCCCATCCACTCGTGGAGTCCTCCACCCTTTGCTCCTCTGGCCAGAGCCGAAAGCAcctcctccatctcctccgtCACCTCTCTGAGCGCAGCCTCCACACCTACACTAGGCCGAGAGCTCAACCTCTCTGTGTCAGTATGCTCCAGAGGTCCGAGTCCTCTCACAATGGGTCCCCAGGACACTCTACCGGTGGCAGCCGCCTTCACAGAGACCATCAGCGCTTACTTTAAAGGAGCAGATCCCACTAAGTGTTTGGTGAAGATCGCCGGTGAGATGGTGTTGTCTTTCCCAGCAGGGATCACCAGACACTTCTCCACCCATCCCAGTCCACCGGTGCTGACCTTCACCATCAGTCAGTACAGTCGACTGGAGCAGGTCCTTCCCAACCCACAGCTTCTGTGCTGCGACACCACGCCACCTACAGGTGATTCAAAGGAGTTCTGGGTCAACATGTCAAACCTGTTGAGTCACCTGAAGAAGGTGGCTGAGCAGAGGCCACAGGCCACGTACTACAACGTAGACATGCTGAAGTACCAGGTGTCCACTCGAGGCATCCAGTCCACTCCGCTGAACCTGGCGGTGAGCTGGCGGGGTGATGCCTGCAGCACAGACCTCAGGATAGACTATAAATACAACACGGAGGCCATGCCCATACCCACACCGCTCACCAACATCCACTTCATGGCAGCTGTGGACGGCGGCGTGAACAAACTGCAGGCTATGCTCCCACTTGCCCACTGGAACCCGGAGGAGCAGAACATAATGTGGAAGATCCCAGAGCTCTCACAGAGGTCTGAAAATGGAGGTAGTGGCGCTCTTCTGGCTCGCTTCCGGTTAGGAGGTCCCAGCAGACCTTCTCAGCTGGCAGTGCAGTTCACCAGTGAGGGCAGCACTCTGTCTGGATGCGATTTTCAACTCGTCGGTTCAGGCTACAGACTCTCTTTGgtcaaaaaaaggttttctgcAGGTAAATATCTGGCAGACAACTGACATGTAGGATGGACTGCGAGTGGGGGTGCTCTTTTGGCACTACAAAGActttggaaaaatgtttttattgaaatacagCACTCAAAATCTCACGTA

Function

symbol description
sgip1b Predicted to be involved in clathrin coat assembly and clathrin-dependent endocytosis. Predicted to be active in clathrin-coated pit and clathrin-coated vesicle. Orthologous to human SGIP1 (SH3GL interacting endocytic adaptor 1).

NR:

description
PREDICTED: SH3-containing GRB2-like protein 3-interacting protein 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13062 False 289 lncRNA 0.46 2 2287346 2288216
TU13065 False 507 TUCP 0.35 5 2270681 2275135
XM_043257962.1 True 2886 mRNA 0.57 25 2270679 2288172

Neighbor

gene id symbol gene type direction distance location
pde4bb pde4bb,LOC107719260,LOC107681771,LOC107593782,LOC107671696,LOC107559365,LOC108430746 coding upstream 5154 2213103 ~ 2265525 (+)
LOC122358163 leprot,LOC107754776,LOC107719262,LOC107681772,LOC107671671 coding upstream 61456 2205194 ~ 2209223 (+)
LOC122358154 LOC107681836,LOC107719284 coding upstream 92514 2173372 ~ 2178165 (+)
LOC122326519 lrp8,LOC107681710,LOC107671705,LOC107719273,LOC107559340 coding upstream 114440 2083675 ~ 2156239 (+)
ebna1bp2 ebna1bp2,LOC107722608,LOC107580944 coding upstream 194642 2072770 ~ 2076037 (+)
LOC122326129 tctex1d1,LOC107709344,LOC107719283 coding downstream 3247 2291463 ~ 2293495 (+)
bcl6ab LOC107593779,LOC107681786,LOC107559367,LOC107709352,LOC107671762,LOC107719257 coding downstream 21321 2309537 ~ 2316103 (+)
LOC122358683 fam78ba,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC105891364,LOC107102035,LOC101481240 coding downstream 34495 2322711 ~ 2327443 (+)
LOC122358767 tsen15,LOC107735630,LOC107681748 coding downstream 102662 2390878 ~ 2391452 (+)
LOC122358704 cmpk,cmpk1,LOC107719256,LOC107681787,LOC107671754,LOC107559368,LOC107709354 coding downstream 139341 2427557 ~ 2431457 (+)
G8703 NA non-coding upstream 17088 2249222 ~ 2253591 (+)
G8707 NA non-coding upstream 43428 2226905 ~ 2227251 (+)
G8706 NA non-coding upstream 48605 2221708 ~ 2222074 (+)
G8701 NA non-coding upstream 58070 2212258 ~ 2212609 (+)
G8700 NA non-coding upstream 58606 2211753 ~ 2212073 (+)
G8716 NA non-coding downstream 70 2288286 ~ 2321187 (+)
G8717 NA non-coding downstream 609 2288825 ~ 2290040 (+)
G8737 NA non-coding downstream 155372 2443588 ~ 2445200 (+)
G8724 NA non-coding downstream 223406 2511622 ~ 2609519 (+)
G8764 NA non-coding downstream 324306 2612522 ~ 2613104 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other upstream 79231 2178766 ~ 2191448 (+)
arl14 arl14,LOC107722413,LOC107719289 other upstream 333920 1933512 ~ 1936759 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other upstream 360000 1903067 ~ 1910679 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other upstream 710905 1544773 ~ 1559774 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other upstream 861958 1397524 ~ 1408721 (+)
G8725 sec22ba,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393 other downstream 110738 2398954 ~ 2401745 (+)
LOC122358652 slc35a3b,LOC107559354,LOC107593843,LOC107671667,LOC107709347 other downstream 118526 2406742 ~ 2419955 (+)
zgc:55943 zgc:55943,LOC107727521,LOC107671715,LOC107709356,LOC107559369,LOC107593773,LOC108430752 other downstream 259850 2548066 ~ 2555321 (+)
G8760 NA other downstream 303418 2591634 ~ 2592758 (+)
LOC122355548 NA other downstream 328991 2617207 ~ 2669943 (+)

Expression


Co-expression Network