LOC122355548


Basic Information

Item Value
gene id LOC122355548
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2617207 ~ 2669943 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU13126
ACTGGGTCCTTCGTTCCCTCTGAGAGACTCTGGTGACCGTCCACGTGGAGATGATTAAGTCGAAACGAGGGTCATCGTGAGCTCTTAAAGAGTGAAAGCAGCAGGAAATGGCTGGTGCACCGTGTCACGTGTTAACACCATGAGGACCGGGAGAAAcgtgtgctttttgagctccagGTGAGCAGACCTGCAGCATGGACGAGGTTATGTGACGCCTGCTGTGCagGGTCTGTATTCAAGGAGTGATCCTTTCTAGCGGAGGTAACTTCCCCAGCATTCAAAGACTAGTGACGCTGTTTTCTGCGCGTGTGAATCTGCGCTAcattcttttataaataaaaccttcTGCTTAACagcctgtctttttttttttttttttttttttttttttttttttttttATTTTCTGGTTGGAATAGGTTTATTTGATCTGTCTGTAAACAAGGTGGTTAAATCatggcatttgttttttttctttccttccacGCAAATTGAGTTGAATATCAGCTGGTCAGGTGTAAGAGGGAGAGAACTGGACATAATTTGATGCTTTTCCTTAAATCTGTACATTTTCCATGCGCCCTGGAGGTTGATTTACGCCAAATATCCCAAAGGTGCCACTGAAGAATTGACTCCTCGCAAAGGCAGCAGTTAAAATCCATCTCACAGTAGCAACAGATCAGATCTACATTATGGCACAGGATACACAGCTTTATTTAACAAGTTTCCACAATACAACTGACTTCGACTAGTGGTCTTTTTCCAACTAATACCACCATATCCCAGAAAAAGTTAGTGTACACAGTTTACttcagtatctttttttttttttttttgtctatttaatGAAGCATTTGTACCGTGCTATGACAGTTTGATACATCGCAATTAAGTAGTTTACAAGGCAATGACTTCCAAATGGTTTCATTCTTGAAAATAACAgattaaaagtcaaaaatgtttaagaattttGAGGTGACATGTTAACAATAAGACTGCCATTTCATCTATTCAAGACATTCATGAGATGAGCTCTCAGGTAGTTATcatacatgattttttttttttttttttttttttaaattttcaaactgTTAAGCCAGTAATAGTGTTTTAATAGAAATGAGCTTGGTGTTACATTGTGTATTTGAAGTGTTGAGAATTTAGTGTTATAAAGTCAGCAACAGATGAAGCTAGCAGTCGTCCTTCACAACAACAGTTTGGAGCAATTCTGTTAATCCTGCCGGATGCAACAAAAACTTGGTCCTATCAGAGAACCCAAAGTGAAATGGACAGAACCAGGAGGTACATTGGGATGGCAGcactttgtcttaaaaaaaagaaaggaaaaaaaaaaaaaaaaaaaaaaagagaaagaaaatgacaaacaaaatgaaaaaaaaaaaaaaaaaaacattttacaggaGCTGGCAAACAACAATTATAAGTGCCTGAGCTATGTAGCGATGGAATGTCCATACAGAGTCCGGGATGCAAAGGCTCTTGGGGAACAACTTAACCCAAACCTTGTAAATGCTGATCTGCCACCACACTCAAAATATTCCAACATTAGACCAATGACTTACAAGACCACATCCAAATACAACAGCAAAAGCATTTGATATAAGGTTCTCAAACTAAAGAAGGTACAGGGCATATAATAGTAGCCGGAGCAAAGGTGGTGCAGTTCACGAGGGCAGGGGCATAGGTGCTTACTAACTTAATTCAGGATCAAACcgagcaaagaaaataaaaacgataataaaaaggagggggaaaaataaaaagttatgtgACTGGTTAACTTCATTCTCAAAAGCTGAGACAAGGTGGTGTAGTTAGTTACTGGAAAACCATGATATTGACCTAAAAGATATGCATGCACTTTTTTCCATCCTGGACATGCTGTATACAAGGAAGACCGTGAGAGCTCAGCAAGGGCTCGGAGCACTTGTGAGGCATCAATCTATCTTAAGCTGGTTCATTAGCAGTGCctaaggaaaacaaaaaaaaaattggaccATGTAGTGACTTCATTTACTTGCGAATTTACACATTCTGGGTCGTCCGATTCGAAACGAacaacggaaaaaaaaaattcttcatttCACTTCTACGGTTATGTACAGTAGTGTTTGTGATTGAACCTTCATGAAACCAACATGCTTGATTTACTgtggcacacaaaaaaaaaaaaaaaaaaaaaaaagatgtcgaAACTAACGGACGTGGAGCATTGAACAAAAGgaaaacttcattttaaaaaaaagaataattggACAGATAGATTTGGAGAGAGACAACGATGCATCTACTAACTGTTTCTGGTAGTGTTGTCGAGTTGACAAAAAGGGGGCGAGGAAGGGTGGGTGTTTGGGTAGTGTGGTGCGGTGTATTAAAGTGAGCTGCTGTGTGGATGGATGGGAAGGGGCTGCTTTAGTATCCAACTTTCCTCAGGTACTCAGCCATGCTAAATGCTTTCTTGTTGAGCGATCCTCCGTGGGTACCTTCCTTTCCCATGACTATAA
>TU13127
ACTGGGTCCTTCGTTCCCTCTGAGAGACTCTGGTGACCGTCCACGTGGAGATGATTAAGTCGAAACGAGGGTCATCGTGAGCTCTTAAAGAGTGAAAGCAGCAGGAAATGGCTGGTGCACCGTGTCACGTGTTAACACCATGAGGACCGGGAGAAAcgtgtgctttttgagctccagGTGAGCAGACCTGCAGCATGGACGAGGTTATGTGACGCCTGCTGTGCagGGTCTGTATTCAAGGAGTGATCCTTTCTAGCGGAGGTAACTTCCCCAGCATTCAAAGACTAGTGACGCTGTTTTCTGCGCGTGTGAATCTGCGCTAcattcttttataaataaaaccttcTGCTTAACagcctgtctttttttttttttttttttttttttttttttttttttttgtatgtgcgTGGTTTATGGTCTCTTGAAAAATCAGTCGAGTGTTTTGTGGTACgcagtattaaaaaaagtaaatggtcCAAACTCAATTTCCACATTAGAAATAGTTGTTCCACTTTTTGCTTGCTGACTTCTAGGgcagtaaaaacaaatcatgcCTGCTGAATTGAAGAAAATGGTTTAATTCGGACGACTTGCTCTCATTAGGAAGTTGTGATTTGGTGCCAGAATGATTTGAAATGCTAACAAGTGAGTTTTGTACACAAAATGGACTGTGGAGAATTAAATTTTCGTTAGATTTGAAATGGTGAAACCGTTTTAGAAATACGCCTCTTAATAAACGTTTACACAATGTTTGAATTGAATGTATACATTTCAACCATCAGTTTCAGAGAAATGAAATGTAGCGTCTTTTGCAATCGCTCTTTACCTGTA
>TU13128
ACTGGGTCCTTCGTTCCCTCTGAGAGACTCTGGTGACCGTCCACGTGGAGATGATTAAGTCGAAACGAGGGTCATCGTGAGCTCTTAAAGAGTGAAAGCAGCAGGAAATGGCTGGTGCACCGTGTCACGTGTTAACACCATGAGGACCGGGAGAAAcgtgtgctttttgagctccagGTGAGCAGACCTGCAGCATGGACGAGGTTATGTGACGCCTGCTGTGCagGGTCTGTATTCAAGGAGTGATCCTTTCTAGCGGAGGTAACTTCCCCAGCATTCAAAGACTAGTGACGCTGTTTTCTGCGCGTGTGAATCTGCGCTAcattcttttataaataaaaccttcTGCTTAACagcctgtctttttttttttttttttttttttttttttttttttttttTTTTCTGGTTGGAATAGGTTTATTTGATCTGTCTGTAAACAAGGTGGTTAAATCatggcatttgttttttttctttccttccacGCAAATTGAGTTGAATATCAGCTGGTCAGGTGTAAGAGGGAGAGAACTGGACATAATTTGATGCTTTTCCTTAAATCTGTACATTTTCCATGCGCCCTGGAGGTTGATTTACGCCAAATATCCCAAAGGTGCCACTGAAGAATTGACTCCTCGCAAAGGCAGCAGTTAAAATCCATCTCACAGTAGCAACAGATCAGATCTACATTATGGCACAGGATACACAGCTTTATTTAACAAGTTTCCACAATACAACTGACTTCGACTAGTGGTCTTTTTCCAACTAATACCACCATATCCCAGAAAAAGTTAGTGTACACAGTTTACttcagtatctttttttttttttttttgtctatttaatGAAGCATTTGTACCGTGCTATGACAGTTTGATACATCGCAATTAAGTAGTTTACAAGGCAATGACTTCCAAATGGTTTCATTCTTGAAAATAACAgattaaaagtcaaaaatgtttaagaattttGAGGTGACATGTTAACAATAAGACTGCCATTTCATCTATTCAAGACATTCATGAGATGAGCTCTCAGGTAGTTATcatacatgattttttttttttttttttttttttaaattttcaaactgTTAAGCCAGTAATAGTGTTTTAATAGAAATGAGCTTGGTGTTACATTGTGTATTTGAAGTGTTGAGAATTTAGTGTTATAAAGTCAGCAACAGATGAAGCTAGCAGTCGTCCTTCACAACAACAGTTTGGAGCAATTCTGTTAATCCTGCCGGATGCAACAAAAACTTGGTCCTATCAGAGAACCCAAAGTGAAATGGACAGAACCAGGAGGTACATTGGGATGGCAGcactttgtcttaaaaaaaagaaaggaaaaaaaaaaaaaaaaaaaaaaagagaaagaaaatgacaaacaaaatgaaaaaaaaaaaaaaaaaaacattttacaggaGCTGGCAAACAACAATTATAAGTGCCTGAGCTATGTAGCGATGGAATGTCCATACAGAGTCCGGGATGCAAAGGCTCTTGGGGAACAACTTAACCCAAACCTTGTAAATGCTGATCTGCCACCACACTCAAAATATTCCAACATTAGACCAATGACTTACAAGACCACATCCAAATACAACAGCAAAAGCATTTGATATAAGGTTCTCAAACTAAAGAAGGTACAGGGCATATAATAGTAGCCGGAGCAAAGGTGGTGCAGTTCACGAGGGCAGGGGCATAGGTGCTTACTAACTTAATTCAGGATCAAACcgagcaaagaaaataaaaacgataataaaaaggaggaagaaaaaaaaaagtctttcccCCCGATGACACGGGGACATTATAGGATATTATCACCAATCTTCCCTTGATTGCTATTAAATTTTTTCAAGACATTAACTGCTTGAAGGAGAAAGCTTAACAGCaaacttctttcttctttctgtccCTCAAGTGAAACTAAACAAGCTTAATTACATTAGAACCCTGAATCCCTCAAGTATTTTGCCATTGAGTATGCCTTCTTATTCAATCCGCCTCCATGGACCCCTTCTTTGCCCATTACAAGAACCAAGAC
>TU13130
aagaaaaaaaaaaaaaaaaaaaaaaaaaagttatgtgACTGGTTAACTTCATTCTCAAAAGCTGAGACAAGGTGGTGTAGTTAGTTACTGGAAAACCATGATATTGACCTAAAAGATATGCATGCACTTTTTTCCATCCTGGACATGCTGTATACAAGGAAGACCGTGAGAGCTCAGCAAGGGCTCGGAGCACTTGTGAGGCATCAATCTATCTTAAGCTGGTTCATTAGCAGTGCctaaggaaaacaaaaaaaaaattggaccATGTAGTGACTTCATTTACTTGCGAATTTACACATTCTGGGTCGTCCGATTCGAAACGAacaacggaaaaaaaaaattcttcatttCACTTCTACGGTTATGTACAGTAGTGTTTGTGATTGAACCTTCATGAAACCAACATGCTTGATTTACTgtggcacacaaaaaaaaaaaaaaaaaaaaaaaagatgtcgaAACTAACGGACGTGGAGCATTGAACAAAAGgaaaacttcattttaaaaaaaagaataattggACAGATAGATTTGGAGAGAGACAACGATGCATCTACTAACTGTTTCTGGTAGTGTTGTCGAGTTGACAAAAAGGGGGCGAGGAAGGGTGGGTGTTTGGGTAGTGTGGTGCGGTGTATTAAAGTGAGCTGCTGTGTGGATGGATGGGAAGGGGCTGCTTTAGTATCCAACTTTCCTCAGGTACTCAGCCATGCTAAATGCTTTCTTGTTGAGCGATCCTCCGTGGGTACCTTCCTTTCCCATGACTATAACCAACACTGGAGTAcataaggaaagaaaaaagacgacaaatgaacaaaactgaaaaggaaaaaaaagaaaagaaaaaaaaaagtctttcccCCCGATGACACGGGGACATTATAGGATATTATCACCAATCTTCCCTTGATTGCTATTAAATTTTTTCAAGACATTAACTGCTTGAAGGAGAAAGCTTAACAGCaaacttctttcttctttctgtccCTCAAGTGAAACTAAACAAGCTTAATTACATTAGAACCCTGAATCCCTCAAGTATTTTGCCATTGAGTATGCCTTCTTATTCAATCCGCCTCCATGGACCCCTTCTTTGCCCATTACAAGAACCAAGAC
>TU13131
ACTGGGTCCTTCGTTCCCTCTGAGAGACTCTGGTGACCGTCCACGTGGAGATGATTAAGTCGAAACGAGGGTCATCGTGAGCTCTTAAAGAGTGAAAGCAGCAGGAAATGGCTGGTGCACCGTGTCACGTGTTAACACCATGAGGACCGGGAGAAAcgtgtgctttttgagctccagGTGAGCAGACCTGCAGCATGGACGAGGTTATGTGACGCCTGCTGTGCagGGTCTGTATTCAAGGAGTGATCCTTTCTAGCGGAGGTAACTTCCCCAGCATTCAAAGACTAGTGACGCTGTTTTCTGCGCGTGTGAATCTGCGCTAcattcttttataaataaaaccttcTGCTTAACagcctgtcttttttttttttttttttttttttttttttttttttttTTTTCTGGTTGGAATAGGTTTATTTGATCTGTCTGTAAACAAGGTGGTTAAATCatggcatttgttttttttctttccttccacGCAAATTGAGTTGAATATCAGCTGGTCAGGTGTAAGAGGGAGAGAACTGGACATAATTTGATGCTTTTCCTTAAATCTGTACATTTTCCATGCGCCCTGGAGGTTGATTTACGCCAAATATCCCAAAGGTGCCACTGAAGAATTGACTCCTCGCAAAGGCAGCAGTTAAAATCCATCTCACAGTAGCAACAGATCAGATCTACATTATGGCACAGGATACACAGCTTTATTTAACAAGTTTCCACAATACAACTGACTTCGACTAGTGGTCTTTTTCCAACTAATACCACCATATCCCAGAAAAAGTTAGTGTACACAGTTTACttcagtatctttttttttttttttttgtctatttaatGAAGCATTTGTACCGTGCTATGACAGTTTGATACATCGCAATTAAGTAGTTTACAAGGCAATGACTTCCAAATGGTTTCATTCTTGAAAATAACAgattaaaagtcaaaaatgtttaagaattttGAGGTGACATGTTAACAATAAGACTGCCATTTCATCTATTCAAGACATTCATGAGATGAGCTCTCAGGTAGTTATcatacatgattttttttttttttttttttttttaaattttcaaactgTTAAGCCAGTAATAGTGTTTTAATAGAAATGAGCTTGGTGTTACATTGTGTATTTGAAGTGTTGAGAATTTAGTGTTATAAAGTCAGCAACAGATGAAGCTAGCAGTCGTCCTTCACAACAACAGTTTGGAGCAATTCTGTTAATCCTGCCGGATGCAACAAAAACTTGGTCCTATCAGAGAACCCAAAGTGAAATGGACAGAACCAGGAGGTACATTGGGATGGCAGcactttgtcttaaaaaaaagaaaggaaaaaaaaaaaaaaaaaaaaaaagagaaagaaaatgacaaacaaaatgaaaaaaaaaaaaaaaaaaacattttacaggaGCTGGCAAACAACAATTATAAGTGCCTGAGCTATGTAGCGATGGAATGTCCATACAGAGTCCGGGATGCAAAGGCTCTTGGGGAACAACTTAACCCAAACCTTGTAAATGCTGATCTGCCACCACACTCAAAATATTCCAACATTAGACCAATGACTTACAAGACCACATCCAAATACAACAGCAAAAGCATTTGATATAAGGTTCTCAAACTAAAGAAGGTACAGGGCATATAATAGTAGCCGGAGCAAAGGTGGTGCAGTTCACGAGGGCAGGGGCATAGGTGCTTACTAACTTAATTCAGGATCAAACcgagcaaagaaaataaaaacgataataaaaaggaggaagaaaaaaaaaagtctttcccCCCGATGACACGGGGACATTATAGGATATTATCACCAATCTTCCCTTGATTGCTATTAAATTTTTTCAAGACATTAACTGCTTGAAGGAGAAAGCTTAACAGCaaacttctttcttctttctgtccCTCAAGTGAAACTAAACAAGCTTAATTACATTAGAACCCTGAATCCCTCAAGTATTTTGCCATTGAGTATGCCTTCTTATTCAATCCGCCTCCATGGACCCCTTCTTTGCCCATTACAAGAACCAAGAC
>XR_006252229.1
TGTAGGTTGAGGAAGCGAGTAGGCTCAGGAATTGCGCTCAGGCACTTTCTCGACCGCCTAAACTGGGTCCTTCGTTCCCTCTGAGAGACTCTGGTGACCGTCCACGTGGAGATGATTAAGTCGAAACGAGGGTCATCGTGAGCTCTTAAAGAGTGAAAGCAGCAGGAAATGGCTGGTGCACCGTGTCACGTGTTAACACCATGAGGACCGGGAGAAAcgtgtgctttttgagctccagGTGAGCAGACCTGCAGCATGGACGAGGTTATGTGACGCCTGCTGTGCagGGTCTGTATTCAAGGAGTGATCCTTTCTAGCGGAGGTAACTTCCCCAGCATTCAAAGACTAGTGACGCTGTTTTCTGCGCGTGTGAATCTGCGCTAcattcttttataaataaaaccttcTGCTTAACa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13126 True 2528 lncRNA 0.39 6 2617268 2669597
TU13127 False 834 lncRNA 0.40 5 2617268 2619357
TU13128 False 2049 TUCP 0.38 7 2617268 2669943
TU13130 False 1116 lncRNA 0.35 2 2638542 2669943
TU13131 False 2048 TUCP 0.38 7 2617268 2669943
XR_006252229.1 False 416 lncRNA 0.50 5 2617207 2618878

Neighbor

gene id symbol gene type direction distance location
ap2m1a ap2m1a,ap2m1b,ap2m1,LOC107671693,LOC107593770,LOC107709357,LOC107602122 coding upstream 10351 2598768 ~ 2606856 (+)
abi1b abi1b,LOC107671751,LOC107559371,LOC107681778 coding upstream 35942 2563177 ~ 2581265 (+)
imp3 imp3,LOC107671714,LOC107681808 coding upstream 72644 2541915 ~ 2544563 (+)
LOC122360938 LOC107593781,LOC107719259,LOC107709351,LOC107671695,LOC107559342 coding upstream 107197 2495943 ~ 2510010 (+)
LOC122360901 NA coding upstream 155985 2453850 ~ 2461222 (+)
LOC122323799 LOC107681838,LOC107709342,LOC107593839,LOC108430687,LOC103043726,LOC105899208 coding downstream 25478 2695421 ~ 2701972 (+)
vps4b vps4b,LOC107710065,LOC107681797,LOC107727524,LOC107671729 coding downstream 47630 2717573 ~ 2729493 (+)
bcl2b bcl2b,LOC107727540,LOC107593762,LOC107671740,LOC107711715,LOC107559382 coding downstream 72772 2742715 ~ 2780678 (+)
dpp6b dpp6b,LOC107658692,LOC107711712,LOC107671710,LOC107727490,LOC107558008 coding downstream 285766 2955709 ~ 3064602 (+)
kcnt2 LOC107661911,LOC107727504,LOC107593757 coding downstream 500508 3170451 ~ 3190588 (+)
G8764 NA non-coding upstream 4103 2612522 ~ 2613104 (+)
G8724 NA non-coding upstream 7688 2511622 ~ 2609519 (+)
G8737 NA non-coding upstream 172007 2443588 ~ 2445200 (+)
G8716 NA non-coding upstream 296020 2288286 ~ 2321187 (+)
G8717 NA non-coding upstream 327167 2288825 ~ 2290040 (+)
G8794 NA non-coding downstream 149129 2819072 ~ 2872749 (+)
G8816 NA non-coding downstream 242348 2912291 ~ 2912787 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding downstream 446905 3116848 ~ 3121053 (+)
G9130 ipp non-coding downstream 853327 3523270 ~ 3524571 (+)
G9141 NA non-coding downstream 893765 3563708 ~ 3564239 (+)
G8760 NA other upstream 24449 2591634 ~ 2592758 (+)
zgc:55943 zgc:55943,LOC107727521,LOC107671715,LOC107709356,LOC107559369,LOC107593773,LOC108430752 other upstream 61886 2548066 ~ 2555321 (+)
LOC122358652 slc35a3b,LOC107559354,LOC107593843,LOC107671667,LOC107709347 other upstream 197252 2406742 ~ 2419955 (+)
G8725 sec22ba,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393 other upstream 215462 2398954 ~ 2401745 (+)
sgip1b sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747 other upstream 328991 2270679 ~ 2288216 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other downstream 5427 2675370 ~ 2689627 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other downstream 59693 2729636 ~ 2739907 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other downstream 453181 3123124 ~ 3164823 (+)
G9154 rock1,LOC107671690 other downstream 945539 3615482 ~ 3617043 (+)
G9173 NA other downstream 1006482 3676425 ~ 3678934 (+)

Expression


Co-expression Network