G8880 (bcl6ab,LOC107593779,LOC107719257,LOC107559367,LOC107709352,LOC107681786,LOC107671762)


Basic Information

Item Value
gene id G8880
gene name bcl6ab,LOC107593779,LOC107719257,LOC107559367,LOC107709352,LOC107681786,LOC107671762
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2439361 ~ 2441713 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU13282
TTTGACAGAGGCGCAGCACAGGACCCACAAGATCAGAGCGGGACAGAATCTACTGTAACGACTGTGAGTCCAGGAGCGAATCCGACGGAGAGAATCCACGATGGCTGCAGGACGGAAAACGGTACAAATGTGACCGCTGCCAGGCCATGTTCTGCTACAACGGGAACCTAGCGAGCCACAAATCCATCCACGCAGGGGGAGAGAAACCGTACCGCTGCGGCGTGTGCGGAGCGCAGTTCAACAGACCCGCCAATCTGAAGACACACTCACGGATCCACTCGGGAGAAAAACCGTACAAATGTGAAACCTGCGGCTCGCGCTTCGTCCAGGTGGCTCATCTGAGGGCTCACGTGctgatccacaccggagagaaaccgtaccCGTGTGACATCTGCGGCACGCGCTTCCGCCACCTTCAGACGCTGAAGAGTCACTTACGAATACACACGGGAGAGAAACCTTATCATTGTGAGAATTGTGACCTGCACTTCCGCCACAAGAGTCAGCTGCGTCTTCATCTGCGACAGAAGCACGGCGCC
>TU13285
TTTGACAGAGGCGCAGCACAGGACCCACAAGATCAGAGCGGGACAGAATCTACTGTAACGACTGTGAGTCCAGGAGCGAATCCGACGGAGAGAATCCACGATGGCTGCAGGACGGAAAACGGTACAAATGTGACCGCTGCCAGGCCATGTTCTGCTACAACGGGAACCTAGCGAGCCACAAATCCATCCACGCAGGGGGAGAGAAACCGTACCGCTGCGGCGTGTGCGGAGCGCAGTTCAACAGACCCGCCAATCTGAAGACACACTCACGGATCCACTCGGGAGAAAAACCGTACAAATGTGAAACCTGCGGCTCGCGCTTCGTCCAGGTGGCTCATCTGAGGGCTCACGTGctgatccacaccggagagaaaccgtaccCGTGTGACATCTGCGGCACGCGCTTCCGCCACCTTCAGACGCTGAAGAGTCACTTACGAATACACACGGGAGAGAAACCTTATCATGTGAGCATCAGCTGCACCAAAGTCTtgcatatttgtagcaatagccaacaatacactgtatgggtcaaaatgacaaTTAACG

Function

symbol description
bcl6ab Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; regulation of cytokine production; and regulation of immune system process. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in B-cell lymphoma and diffuse large B-cell lymphoma. Orthologous to human BCL6 (BCL6 transcription repressor).

NR:

description
PREDICTED: B-cell lymphoma 6 protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13282 False 539 TUCP 0.39 5 2439361 2441713
TU13285 True 549 TUCP 0.45 4 2440124 2441713

Neighbor

gene id symbol gene type direction distance location
LOC122358118 LOC107681770,LOC107754775,LOC107671698,LOC107559364,LOC107593785,LOC107719272 coding downstream 234979 2189510 ~ 2204382 (-)
LOC122355393 LOC107681824,LOC107719263,LOC107722033,LOC107671706 coding downstream 270040 2158449 ~ 2169321 (-)
LOC122357078 cfap57 coding downstream 368834 2056567 ~ 2070527 (-)
aldh9a1b aldh9a1,aldh9a1b,LOC107681718,LOC107593789,LOC108430735 coding downstream 442454 1991585 ~ 1996907 (-)
fzr1b fzr1b,LOC107701330,LOC107719268,LOC107593790,LOC107722096 coding downstream 460163 1972019 ~ 1979198 (-)
LOC122358726 tctex1d1,LOC107709344,LOC107719283 coding upstream 19596 2461309 ~ 2465921 (-)
LOC122358747 arf1,LOC107727518,LOC103038497,LOC107671731 coding upstream 76002 2517715 ~ 2519661 (-)
sec22ba sec22ba,sec22b,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393 coding upstream 102847 2544560 ~ 2548852 (-)
tsen15 tsen15,LOC107681748,LOC107735630 coding upstream 112191 2553904 ~ 2557648 (-)
acbd5b LOC107593842 coding upstream 116017 2557730 ~ 2562460 (-)
G8889 NA non-coding downstream 38764 2348072 ~ 2400597 (-)
G8862 pde4bb,LOC107681771,LOC107719260,LOC107593782,LOC107559365,LOC107671696 non-coding downstream 209068 2229822 ~ 2230293 (-)
G8859 NA non-coding downstream 218523 2219948 ~ 2220838 (-)
G8856 NA non-coding downstream 223533 2215433 ~ 2215828 (-)
G8854 NA non-coding downstream 226308 2212772 ~ 2213053 (-)
G8919 NA non-coding upstream 25174 2466887 ~ 2468236 (-)
G8929 NA non-coding upstream 83180 2524893 ~ 2581281 (-)
G8949 LOC107593767,LOC107727546,LOC107681837 non-coding upstream 205182 2646895 ~ 2647796 (-)
G8941 LOC107727545,LOC107577584 non-coding upstream 216700 2658413 ~ 2661082 (-)
G8964 NA non-coding upstream 255492 2697205 ~ 2742439 (-)
insl5b LOC107719258,LOC107593780 other downstream 138001 2298796 ~ 2301360 (-)
LOC122355284 NA other downstream 310821 2075298 ~ 2128540 (-)
tmem125b tmem125b,LOC107719275,LOC107681700,LOC107681734,LOC107719290,LOC107593887 other downstream 383652 2050430 ~ 2055709 (-)
slc1a7a slc1a7a,slc1a7,LOC107722044,LOC107671767,LOC107681716,LOC107593788 other downstream 400656 2016408 ~ 2038705 (-)
gng5 NA other downstream 498640 1922295 ~ 1940721 (-)
G8913 NA other upstream 471 2442184 ~ 2443319 (-)
G8921 LOC107719259,LOC107593781,LOC107559342,LOC107671695,LOC107709351 other upstream 35000 2476713 ~ 2502739 (-)
LOC122358781 LOC107670596,LOC107717621,LOC107758059,LOC107709348,LOC107575479,LOC107671662 other upstream 69894 2511607 ~ 2517260 (-)
G8931 slc35a3b,LOC107559354,LOC107671667,LOC107593843 other upstream 90123 2531836 ~ 2540982 (-)
anxa13l anxa13l,anxa13,LOC107681706,LOC107727547,LOC107559374,LOC107671694 other upstream 149914 2591627 ~ 2597845 (-)

Expression


Co-expression Network