G9022 (prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289)


Basic Information

Item Value
gene id G9022
gene name prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3116848 ~ 3121053 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU13511
ATGTATAGGaaatatataggctacatatattattattattgtcttttaaatgttttacttgcTTTGTCGTTAATGCTGTATTATAGCGTTTCAGTCAAACAAAAAAGAGCAAATGGACATGTTTACAGAAGTTATATATGTTATCGTAAgaacgtgtgcgtgtgtgtctttgtgttagGTGTGTGTCTTTCGCGTGTCTCGCTTGTGAACCTTTGACCTTTAAAACAGTTGAGTCGGCTTTGAGCGTTTCCCTTTCAACGCGAGAGAGGAAAAAGCTTTTAACTAAAAATTTCCCtagttaatttaaataaacgtCCAAAGGTGAAGCGTTTGAAACGGATTTCCGGGTTTCAGGAGAAGACTTCTTTACCTTCCCGCTCAGCACAGACAGGTTCTCCGCTCCTTCGATGTGAAGAACTTGAGTGGACTGATCGTTCTGGTTCAGGTAGCTCTTGAGCCGGATGAAGTCCACCCTCATGGGCAGGGTCTTGTTGGAGTTTCGGCACAGGACTTTGACGCGGTCCACCAGGTCAGCGCAGAACTGATAGCCTCCCTTCAGCACACACAGCACCACGATGTCATGATCACCGAGATCATCCATGATATTTCTGGCCAGCCTCTCTGTCCTGGAAAACCCCACGACGGCACAACAAAGTCTGACTGTTTGTAGAGTGCACTTTCAAGTACACTCTATGGAAAGGATAATgtatgaaagcaaaaataaagtaataatttgtttaaatggaaaaaaaa

Function

symbol description
prtfdc1 Enables protein homodimerization activity. Predicted to be involved in purine ribonucleoside salvage.

NR:

description
PREDICTED: hypoxanthine-guanine phosphoribosyltransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13511 True 753 lncRNA 0.42 2 3116848 3121053

Neighbor

gene id symbol gene type direction distance location
dpp6b dpp6b,LOC107658692,LOC107711712,LOC107671710,LOC107727490,LOC107558008 coding upstream 52246 2955709 ~ 3064602 (+)
bcl2b bcl2b,LOC107727540,LOC107593762,LOC107671740,LOC107711715,LOC107559382 coding upstream 336170 2742715 ~ 2780678 (+)
vps4b vps4b,LOC107710065,LOC107681797,LOC107727524,LOC107671729 coding upstream 387355 2717573 ~ 2729493 (+)
LOC122323799 LOC107681838,LOC107709342,LOC107593839,LOC108430687,LOC103043726,LOC105899208 coding upstream 414876 2695421 ~ 2701972 (+)
ahsg2 LOC107727545,LOC107681805,LOC107577584,LOC107559377 coding upstream 455819 2658403 ~ 2661029 (+)
kcnt2 LOC107661911,LOC107727504,LOC107593757 coding downstream 49398 3170451 ~ 3190588 (+)
LOC122355741 LOC107661905,LOC107711709,LOC107671722,LOC107727480,LOC107558019 coding downstream 72959 3194012 ~ 3197447 (+)
LOC122362414 LOC107727480 coding downstream 88099 3209152 ~ 3213666 (+)
abhd3 abhd3,LOC107727531,LOC107671728,LOC107711708,LOC107661904 coding downstream 114181 3235234 ~ 3253124 (+)
LOC122355375 LOC107727511,LOC107593880,LOC107711692,LOC107671684,LOC107661913 coding downstream 185209 3306262 ~ 3308298 (+)
G8816 NA non-coding upstream 204061 2912291 ~ 2912787 (+)
G8794 NA non-coding upstream 244099 2819072 ~ 2872749 (+)
G8764 NA non-coding upstream 503744 2612522 ~ 2613104 (+)
G8724 NA non-coding upstream 507329 2511622 ~ 2609519 (+)
G8737 NA non-coding upstream 671648 2443588 ~ 2445200 (+)
G9130 ipp non-coding downstream 402217 3523270 ~ 3524571 (+)
G9141 NA non-coding downstream 442655 3563708 ~ 3564239 (+)
G9142 LOC107579015,LOC107671680,LOC107711685 non-coding downstream 451384 3572437 ~ 3573075 (+)
G9232 NA non-coding downstream 659487 3780540 ~ 3780778 (+)
G9234 NA non-coding downstream 663286 3784339 ~ 3784667 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other upstream 376941 2729636 ~ 2739907 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other upstream 427221 2675370 ~ 2689627 (+)
G8768 zbtb41,LOC107671738,LOC107559347,LOC107709336,LOC107681803 other upstream 480262 2635241 ~ 2636586 (+)
LOC122329004 NA other upstream 498399 2618316 ~ 2618449 (+)
LOC122328998 NA other upstream 498714 2618002 ~ 2618134 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other downstream 2071 3123124 ~ 3164823 (+)
G9154 rock1,LOC107671690 other downstream 494429 3615482 ~ 3617043 (+)
G9173 NA other downstream 555372 3676425 ~ 3678934 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other downstream 635118 3756171 ~ 3790339 (+)
G9361 NA other downstream 1101186 4222239 ~ 4223112 (+)

Expression


Co-expression Network