G9142 (LOC107579015,LOC107671680,LOC107711685)


Basic Information

Item Value
gene id G9142
gene name LOC107579015,LOC107671680,LOC107711685
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3572437 ~ 3573075 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU13693
CGAGCAGAGCTCCTCCGCGTCGCACGCGCAGCGCCACGGGTTCCCGCTGAGCCCGAGAGACCGGAGCGCGCCGAGAGCCGACAGGGAGCTCACGTTAAGCCTGCTCAAGTTATTCCTGCTGATGTCCAGCACCTGAAGAGCGTTGGCGTGCGAGAAAGCCCGAGGGTGAAAGTCCGAGAGCCCGGGGTTATCCGTCAGTCTCAGCATCACCAGGCTCTCCAGCGCGCCGAACGCCTGCTCCTCTATCTGACAGAAGGAGTTGAAGGACAGGTCCAGGTACGCCAGCTTTCTCAGGTTGCCGAACGTGGACTCGGAGATGCGCGTGAGGGAGTTGTTGCTGCAGTCCAGGTAGGTGAGGTCGGACAGGTAGTTGAGCTCGAGCGCGGGGAGCTCGGAGATGCGGTTGTTGGACAGGATGAGCTGGCGGGTGGCGAGCGGGAGCCCCGTCGGGAACGCGCGCAGACCTCGCTCGGCGCACTGGACCACGTGCTGGTCGTCGCACACGCAGCGCTCGGGGCAGCCCGAGGGGACCGAGGACGCCACGTGCgccagaagcagcagcagcatgcgCGCGGGCTCCGGGACGCGTGCCGCGGCGGCGGGCGCCATGGAGTCTTCACGGGACGCGGACGCGAAGAG

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 38-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13693 True 639 lncRNA 0.67 1 3572437 3573075

Neighbor

gene id symbol gene type direction distance location
zyg11l LOC107671664,LOC107574786,LOC107711672 coding upstream 9567 3550235 ~ 3562870 (+)
guk1a LOC107727516,LOC107711703,LOC107593754,LOC107661890,LOC107574785 coding upstream 49661 3512889 ~ 3522776 (+)
arf1 arf1,LOC103038497,LOC107671731,LOC107727518 coding upstream 68182 3499580 ~ 3504255 (+)
wnt3a wnt3a,LOC107727506,LOC107558010,LOC107661901 coding upstream 91258 3460727 ~ 3481179 (+)
snap47 snap47,LOC107661893,LOC107727535,LOC107671760,LOC107711707,LOC107558015 coding upstream 220853 3343658 ~ 3351584 (+)
serbp1b serbp1b,LOC107660393,LOC107567863,LOC107671652 coding downstream 2581 3575656 ~ 3584040 (+)
LOC122362766 LOC107660396,LOC107727523,LOC402879,LOC107593822 coding downstream 12266 3585341 ~ 3590132 (+)
usp14 usp14,LOC107660400,LOC107711695,LOC107671702,LOC107727520,LOC102778130 coding downstream 84940 3658015 ~ 3664392 (+)
pth1r pth1r,pth1ra,LOC107660418,LOC107671674 coding downstream 240238 3813313 ~ 3875726 (+)
slc22a23 LOC107705121,LOC107660403,LOC107708605,LOC107671742,LOC107573857 coding downstream 378208 3951283 ~ 3991543 (+)
G9141 NA non-coding upstream 8198 3563708 ~ 3564239 (+)
G9130 ipp non-coding upstream 47866 3523270 ~ 3524571 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding upstream 451384 3116848 ~ 3121053 (+)
G8816 NA non-coding upstream 659650 2912291 ~ 2912787 (+)
G8794 NA non-coding upstream 699688 2819072 ~ 2872749 (+)
G9232 NA non-coding downstream 207465 3780540 ~ 3780778 (+)
G9234 NA non-coding downstream 211264 3784339 ~ 3784667 (+)
G9235 NA non-coding downstream 211842 3784917 ~ 3785295 (+)
G9241 NA non-coding downstream 313007 3886082 ~ 3916483 (+)
G9302 LOC107600331,LOC107705102 non-coding downstream 440031 4013106 ~ 4021316 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 407614 3123124 ~ 3164823 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other upstream 832530 2729636 ~ 2739907 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other upstream 882810 2675370 ~ 2689627 (+)
G8768 zbtb41,LOC107671738,LOC107559347,LOC107709336,LOC107681803 other upstream 935851 2635241 ~ 2636586 (+)
LOC122329004 NA other upstream 953988 2618316 ~ 2618449 (+)
G9154 rock1,LOC107671690 other downstream 42407 3615482 ~ 3617043 (+)
G9173 NA other downstream 103350 3676425 ~ 3678934 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other downstream 183096 3756171 ~ 3790339 (+)
G9361 NA other downstream 649164 4222239 ~ 4223112 (+)
G9416 wrnip1 other downstream 990822 4563897 ~ 4570094 (+)

Expression


Co-expression Network