G9154 (rock1,LOC107671690)


Basic Information

Item Value
gene id G9154
gene name rock1,LOC107671690
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3615482 ~ 3617043 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU13709
CGGCGATGTTGCTGTCCGTCTCGTCCGGCTGCAGGCTGGTGACGCTGGAGCTGTCCACGCGGAGCTGCAAGTCGTTGAGTTTCTCTCGGAGCTGCTCAATATCGCTCTCCTTACTGTCCAGCTGCATCTGCAGCTCGTTGCGATACGTGCACTCCTCGGCCAATTGCTGCAAACAAAGACGACGACGTTCACTAGGGCCTCGTTCTGAACATCCTTTACCTAATGAAGTGTCCCAGAAACGACCAGCTCGTGTGTCTCTCGTTATCGCCGCAACTTGGATTCAGTCTTTGCGTCACAAGCTTcgtcttatttttttaactgattaaTTGTAGGACTCATTGATCTGAGCTCATGCGCCTcaatttataattattcttCACTCAAAAACTAAAGTGCATGAGCATACATCGATGATGCATACAGAAATGCAAAACCCGTGCTAACTGTAACAAAAGAAGTCGATGAAAAGATTGAATGCAATATTTGGTAATAATATAGCATATAGTTCTTTTTAGGTCAGGTTTTGTTTTGACCACGGTAACAAggcaagggggaaaaaaatactaaaatggtCTGTTTTTAGTCCAAAGTGATGACTTGATTCTTCAAGAATTAAAAACCAATGTGACCTTCGAACTCTAGCGCTATTTCaattctattctttaaaaatcaacaaacaatACACTTGCACTCTATTCGTTTTCTGTCAACACTAGCAAACAACTAACACTAGCTTTGCTATTCTTTtcgtattgttttattttcatacagcACTTGCATAtcgttgctcttttgttgactttgattgcttccattgtcctataagtcactttggataaaagcatctgctaaatgactaaacctAAATGTAAATAACGTTAACTAGCATGACCGGAAGACATCACGAGGGTTATTCGACGCTCATTAATATTGAGGTTATTCTGATGTTGTTTAGTCATGTAATTGACTGGAAACGTTTGGCGTTCGTGATAGAGGCGAATAAACATCGACTTGCCGCTTGCATCTCGTTCAGCTCCTTCTGGTACTTGATGGCCATGTGGTTGAACTTCTCCTTCTCCTGGTTGAGCTCCAGCTGCAGCTTGCggttctccttctctttcttgcGCAGGTCGGTGGTGCTGCCTTTCTTCTTCTGGTCTAACTTCATGTCCTTGCGGTTCATGATCTCAGCCAGCTTGTTCACCGCCTGGGGTCTTCAGAGTTCTTTCTATATTAAGGGCCTTCTCGTAATTGGCCTTTATTGTG

Function

symbol description
rock1 Predicted to enable Rho-dependent protein serine/threonine kinase activity. Involved in epicardial cell to mesenchymal cell transition; negative regulation of adherens junction organization; and positive regulation of stress fiber assembly. Acts upstream of or within regulation of cytoskeleton organization. Predicted to be located in plasma membrane. Predicted to be active in cytoplasmic stress granule and cytoskeleton. Is expressed in forebrain and hindbrain. Orthologous to human ROCK1 (Rho associated coiled-coil containing protein kinase 1).

NR:

description
PREDICTED: rho-associated protein kinase 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13709 True 1266 TUCP 0.43 2 3615482 3617043

Neighbor

gene id symbol gene type direction distance location
LOC122362766 LOC107660396,LOC107727523,LOC402879,LOC107593822 coding upstream 25350 3585341 ~ 3590132 (+)
serbp1b serbp1b,LOC107660393,LOC107567863,LOC107671652 coding upstream 31442 3575656 ~ 3584040 (+)
zyg11l LOC107671664,LOC107574786,LOC107711672 coding upstream 52612 3550235 ~ 3562870 (+)
guk1a LOC107727516,LOC107711703,LOC107593754,LOC107661890,LOC107574785 coding upstream 92706 3512889 ~ 3522776 (+)
arf1 arf1,LOC103038497,LOC107671731,LOC107727518 coding upstream 111227 3499580 ~ 3504255 (+)
usp14 usp14,LOC107660400,LOC107711695,LOC107671702,LOC107727520,LOC102778130 coding downstream 40972 3658015 ~ 3664392 (+)
pth1r pth1r,pth1ra,LOC107660418,LOC107671674 coding downstream 196270 3813313 ~ 3875726 (+)
slc22a23 LOC107705121,LOC107660403,LOC107708605,LOC107671742,LOC107573857 coding downstream 334240 3951283 ~ 3991543 (+)
tubb2 LOC101473957,LOC100702414,LOC107660405,LOC108239677,LOC103371147 coding downstream 376348 3993391 ~ 3997726 (+)
LOC122323258 LOC107660407,LOC107671708,LOC107705103,LOC107562845 coding downstream 436981 4054024 ~ 4149787 (+)
G9142 LOC107579015,LOC107671680,LOC107711685 non-coding upstream 42407 3572437 ~ 3573075 (+)
G9141 NA non-coding upstream 51243 3563708 ~ 3564239 (+)
G9130 ipp non-coding upstream 90911 3523270 ~ 3524571 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding upstream 494429 3116848 ~ 3121053 (+)
G8816 NA non-coding upstream 702695 2912291 ~ 2912787 (+)
G9232 NA non-coding downstream 163497 3780540 ~ 3780778 (+)
G9234 NA non-coding downstream 167296 3784339 ~ 3784667 (+)
G9235 NA non-coding downstream 167874 3784917 ~ 3785295 (+)
G9241 NA non-coding downstream 269039 3886082 ~ 3916483 (+)
G9302 LOC107600331,LOC107705102 non-coding downstream 396063 4013106 ~ 4021316 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 450659 3123124 ~ 3164823 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other upstream 875575 2729636 ~ 2739907 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other upstream 925855 2675370 ~ 2689627 (+)
G8768 zbtb41,LOC107671738,LOC107559347,LOC107709336,LOC107681803 other upstream 978896 2635241 ~ 2636586 (+)
LOC122329004 NA other upstream 997033 2618316 ~ 2618449 (+)
G9173 NA other downstream 59382 3676425 ~ 3678934 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other downstream 139128 3756171 ~ 3790339 (+)
G9361 NA other downstream 605196 4222239 ~ 4223112 (+)
G9416 wrnip1 other downstream 946854 4563897 ~ 4570094 (+)
mylk4a mylk4,LOC107671735,LOC107562868,LOC107708588 other downstream 955902 4572945 ~ 4589827 (+)

Expression


Co-expression Network