G9391 (rpb4,polr2d,LOC106612892)


Basic Information

Item Value
gene id G9391
gene name rpb4,polr2d,LOC106612892
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4459093 ~ 4462842 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU14051
aatattttaaaggaagtgaaataaatgaagcTTGCAGATGATTCCAATCAAATGAAGCAGAAAATGTACAGACTTTAGGTGTGCAGAGATGAATAAAACTAATAGAGCGCAGATTACAACCCGTATTACCAATATGAAGAAATCTGAGTAAATACGATGGCGTTTTTCCCAATAAGAGTTGAACAGAAGCATACAGCTGATAATGATGGATATTAAATGAAACTCCAGTCATAAAGGGATTGCAGCAGGATAAATAAGAATGCAATTTCAGCATATTGCGAAATAGAATTACAGCGAAACACGATATTGTTAATAacaatagttaataataaagttgtttttttcattatcacACAGCCAGTGTAAACtgcttttacattatttttatctccttttacctttatttatatagtgcgtttcaacaaaacagatcaaatcAGCTTTACAGTACTGCATAGGAAAATAGTGCACTGATATCCACTCAGTGTTCAGATAAAGTACACAGACTACGCCATCCACAGCACATTTCACTTTTATAACGTGGCATGATTTTGATGGAAACGGGCCGTTTTGATGCACCGGGGTCCGATTCATTACTCTTTCCTATTAATCTTTTTGACGTTACTGCTTCTCTATCTCCGGCTCTGAGCAAGCAGGACGAGACCTCACAAGCACAAGACTCTCACCGAAGCTGGCCTGAAAAGACGGGAGCCTCTGTAAAGCGAGTGGTCTGACCTGCGCACGCTGGCGATAGTCTCCCGGTTCTTGAAGCGGCTGAACCTGGCGGTGTAGTTGAGGGTCTTCATGAAGACCTCCGACAGCTCCTGCTCGTCCTCCGCGCTTTCGTTCTGCTGCTTGCGATGCTCCAGCAACATGTGGACCTCCGAGTTCAGCAGCGTCTCGGCGTTCTCGAACTCTTAGGAAACATGAGCTGAGACGCGTCCTCCTCCACATCTCCCACATGCGCCGCTCCTCCCGCCGCCATCACGCAACGACTATAGCCGAGAAACAGCGAAAACGAGTTAACCTTCACTGTTTACCACATACAGTCACATCACTACACCGAGGACCGTCTGCGGCGCCGCTCCGAATGAAACACATTCTACTTCCGGTCAagcgaagaagaag
>TU14052
GAGCTGAAATCCTTTGGCTTTTAGTGCAATTCAAGCTTAATTATATGCGTTTCTTTCAGAGAAGCCTCTGTGATTGGACGAGACCTCACAAGCACAAGACTCTCACCGAAGCTGGCCTGAAAAGACGGGAGCCTCTGTAAAGCGAGTGGTCTGACCTGCGCACGCTGGCGATAGTCTCCCGGTTCTTGAAGCGGCTGAACCTGGCGGTGTAGTTGAGGGTCTTCATGAAGACCTCCGACAGCTCCTGCTCGTCCTCCGCGCTTTCGTTCTGCTGCTTGCGATGCTCCAGCAACATGTGGACCTCCGAGTTCAGCAGCGTCTCGGCGTTCTCGAACTCTGAGAGCAATCGAACATCAGATCAGCACAAACACC

Function

symbol description
polr2d Predicted to enable translation initiation factor binding activity. Predicted to be involved in RNA metabolic process; mRNA export from nucleus in response to heat stress; and positive regulation of translational initiation. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Predicted to be active in P-body. Is expressed in several structures, including blastomere; eye; heart; liver; and pleuroperitoneal region. Orthologous to human POLR2D (RNA polymerase II subunit D).
rpb4 Enables translation initiation factor binding activity. Contributes to RNA-directed 5'-3' RNA polymerase activity; single-stranded DNA binding activity; and single-stranded RNA binding activity. Involved in RNA metabolic process; mRNA export from nucleus in response to heat stress; and positive regulation of translational initiation. Located in P-body and nucleus. Part of RNA polymerase II, core complex. Orthologous to human POLR2D (RNA polymerase II subunit D).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14051 True 1128 lncRNA 0.44 2 4461116 4462842
TU14052 False 372 lncRNA 0.40 2 4459093 4462067

Neighbor

gene id symbol gene type direction distance location
LOC122323895 LOC107565531,LOC107708594,LOC107671745,LOC100331149,LOC108436854 coding upstream 26374 4423377 ~ 4432719 (+)
LOC122323886 LOC107671547,LOC107565518 coding upstream 36926 4415924 ~ 4422167 (+)
LOC122323876 LOC107565530 coding upstream 43293 4403781 ~ 4415800 (+)
LOC122360677 znf521,LOC107562851,LOC107705137,LOC107708595,LOC107573008 coding upstream 82096 4305601 ~ 4376997 (+)
ss18 ss18,LOC107671692,LOC107671559 coding upstream 164060 4288018 ~ 4295033 (+)
si:ch211-241e1.3 LOC107671555,LOC107705144,LOC107708592,LOC107565521,LOC107671659 coding downstream 77210 4540052 ~ 4549603 (+)
LOC122328338 foxq1,LOC107685281,LOC107745888,LOC107563088,LOC107671726,LOC107724052 coding downstream 421768 4884610 ~ 4885965 (+)
foxf2a LOC107671725,LOC107745889,LOC107563086,LOC107685282,LOC107724048 coding downstream 425281 4888123 ~ 4891761 (+)
pex5lb pex5lb,LOC107564246,LOC107653517,LOC107660316,LOC107550448,LOC107724753 coding downstream 1267763 5730605 ~ 5763859 (+)
gnb4a LOC107705311,LOC107653516,LOC107564248,LOC108440866,LOC107724752,LOC107660315,LOC103030165,LOC107550449 coding downstream 1302226 5765068 ~ 5779593 (+)
G9382 LOC107671550,LOC107705116,LOC107671683,LOC107562856,LOC107708586,LOC107565517 non-coding upstream 71649 4386927 ~ 4387444 (+)
G9379 NA non-coding upstream 79261 4379576 ~ 4379832 (+)
G9356 LOC107600323,LOC107671560,LOC107705133 non-coding upstream 193077 4260768 ~ 4266016 (+)
G9362 NA non-coding upstream 234982 4223591 ~ 4224111 (+)
G9304 NA non-coding upstream 398117 4015450 ~ 4060976 (+)
G9397 NA non-coding downstream 15467 4478309 ~ 4520645 (+)
G9398 NA non-coding downstream 16635 4479477 ~ 4482624 (+)
G9516 NA non-coding downstream 161920 4624762 ~ 4627170 (+)
G9536 NA non-coding downstream 191114 4653956 ~ 4654170 (+)
G9550 NA non-coding downstream 324204 4787046 ~ 4787369 (+)
G9361 NA other upstream 235981 4222239 ~ 4223112 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other upstream 668754 3756171 ~ 3790339 (+)
G9173 NA other upstream 780159 3676425 ~ 3678934 (+)
G9154 rock1,LOC107671690 other upstream 842050 3615482 ~ 3617043 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 1294270 3123124 ~ 3164823 (+)
G9416 wrnip1 other downstream 101055 4563897 ~ 4570094 (+)
mylk4a mylk4,LOC107671735,LOC107562868,LOC107708588 other downstream 110103 4572945 ~ 4589827 (+)
LOC122361055 LOC107565287,LOC107667819 other downstream 435530 4898372 ~ 4899380 (+)
LOC122355892 foxc1,foxc1a,LOC107745890,LOC107576425,LOC107726170,LOC107563085,LOC105019236 other downstream 446287 4909129 ~ 4911176 (+)
G9630 LOC107705308,LOC107564255,LOC107728403 other downstream 1145485 5608327 ~ 5609276 (+)

Expression


Co-expression Network