G9416 (wrnip1)


Basic Information

Item Value
gene id G9416
gene name wrnip1
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4563897 ~ 4570094 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU14080
CTTTCCGCAGCCGGGAGGCCCCCAGAGAATCAGGGAAGGGATCTCCTGGGACCTCAGCAGGGATCTGAGCAGGGTCTGCTCTCCGATCAGCTTGTTCTGACCGAAGTACTCCTCCAGAGTGCTGGGTCTCAACAGCTCCGCCAGGGGTTTGTCATTATTCAGCCTCAGGGCTCTGGGAGAAGATGCCCCGGCTCCGTCCGGACCCTTCGCTCTCAGGCCCGGGTCTGGGCTCCCCGCGGGGTCTTGGACCACAGGCTCGGTCTGCTTCGGTCTGCTTTGAAACACGGAGAACACCGCGGCGGCCGGCCGGGTGTCGGGGGTGTCGGTGCGGGCTTTTTTGGACGGAGGTCCCGGTTCGCGCGGAGCTGTGTGGTGATGAGCGTCGGCGCTCTGTAAACACTCGTCTAAGTGCGCGTTGATTCTGTCTGGATCGAAGTCACCGGCGCAAACCGGACACTTCACGGTCTCCGACGCGTCCTCCGTCATTGTCGCGCCGAGGCTCACAGTTTATTCGCGAGGCTCTTGTTGACGTTCACCCACATGTAGAAGAAGAGCGCTCTTCCGAGAGTTGATAACGCGGGAGAACGCTGTGGAAGCCACGAGAGGCCAGTGCTTGACCTGAGCCTGTTCAGAAACCCAGAGACTCCTGACGAATCTCCTCGAGTCAAACAGGCCAGACCGAAGGCTGTGCATCGCTGCTCTGGAAGCATCTTTCTGGGCAAACTGGCCTTGTCCCACTATCTGGACAGAGTC
>TU14081
AGCAGACCTCTGAAGCATCCCCGCTCAGCACCTGCAGTCCCAGGAAGTCTACAGCCCGGCGCAGGATCGAGGCCATCGCTTCCACCGACAGACGTTCCAGAACCAGAACCCTGCAGCGGCTCAGAAGAGCACTGTTGACCTGGAAGGACGGGTTCTCTGTGGTGGCGCCGATAAGAGTGATCGTCCCGCACTCCACGTGAGGCAAGAAGGTGTCCTGAGAGCAGAACAGAGACATGGGAGGACAAGAGAAGACACCATACACTCCACAAGAGCAGACATATCAGAGCTGTGGAAGCCACGAGAGGCCAGTGCTTGACCTGAGCCTGTTCAGAAACCCAGAGACTCCTGACGAATCTCCTCGAGTCAAACAGGCCAGACCGAAGGCTGTGCATCGCTGCTCTGGAAGCATCTTTCTGGGCAAACTGGCCTTGTCCCACTATCTGGACAGAGTC

Function

symbol description
wrnip1 Predicted to enable enzyme activator activity and single-stranded DNA helicase activity. Predicted to be involved in DNA-dependent DNA replication and regulation of DNA repair. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be active in nucleus. Orthologous to human WRNIP1 (WRN helicase interacting protein 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14080 True 753 lncRNA 0.54 2 4568633 4570094
TU14081 False 452 TUCP 0.36 2 4563897 4570094

Neighbor

gene id symbol gene type direction distance location
si:ch211-241e1.3 LOC107671555,LOC107705144,LOC107708592,LOC107565521,LOC107671659 coding upstream 14294 4540052 ~ 4549603 (+)
LOC122323895 LOC107565531,LOC107708594,LOC107671745,LOC100331149,LOC108436854 coding upstream 131178 4423377 ~ 4432719 (+)
LOC122323886 LOC107671547,LOC107565518 coding upstream 141730 4415924 ~ 4422167 (+)
LOC122323876 LOC107565530 coding upstream 148097 4403781 ~ 4415800 (+)
LOC122360677 znf521,LOC107562851,LOC107705137,LOC107708595,LOC107573008 coding upstream 186900 4305601 ~ 4376997 (+)
LOC122328338 foxq1,LOC107685281,LOC107745888,LOC107563088,LOC107671726,LOC107724052 coding downstream 314516 4884610 ~ 4885965 (+)
foxf2a LOC107671725,LOC107745889,LOC107563086,LOC107685282,LOC107724048 coding downstream 318029 4888123 ~ 4891761 (+)
pex5lb pex5lb,LOC107564246,LOC107653517,LOC107660316,LOC107550448,LOC107724753 coding downstream 1160511 5730605 ~ 5763859 (+)
gnb4a LOC107705311,LOC107653516,LOC107564248,LOC108440866,LOC107724752,LOC107660315,LOC103030165,LOC107550449 coding downstream 1194974 5765068 ~ 5779593 (+)
si:ch1073-184j22.1 si:ch1073-184j22.1,LOC107564249,LOC107653514,LOC107705312,LOC107660327,LOC107550431,LOC107724751,LOC108440865 coding downstream 1224132 5794226 ~ 5800871 (+)
G9397 NA non-coding upstream 43252 4478309 ~ 4520645 (+)
G9398 NA non-coding upstream 81273 4479477 ~ 4482624 (+)
G9391 rpb4,polr2d,LOC106612892 non-coding upstream 101055 4459093 ~ 4462842 (+)
G9382 LOC107671550,LOC107705116,LOC107671683,LOC107562856,LOC107708586,LOC107565517 non-coding upstream 176453 4386927 ~ 4387444 (+)
G9379 NA non-coding upstream 184065 4379576 ~ 4379832 (+)
G9516 NA non-coding downstream 54668 4624762 ~ 4627170 (+)
G9536 NA non-coding downstream 83862 4653956 ~ 4654170 (+)
G9550 NA non-coding downstream 216952 4787046 ~ 4787369 (+)
G9568 NA non-coding downstream 342901 4912995 ~ 4913362 (+)
G9596 crhr2,LOC107660401,LOC107593817,LOC107671670,LOC100335005 non-coding downstream 504755 5074849 ~ 5111570 (+)
G9361 NA other upstream 340785 4222239 ~ 4223112 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other upstream 773558 3756171 ~ 3790339 (+)
G9173 NA other upstream 884963 3676425 ~ 3678934 (+)
G9154 rock1,LOC107671690 other upstream 946854 3615482 ~ 3617043 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 1399074 3123124 ~ 3164823 (+)
mylk4a mylk4,LOC107671735,LOC107562868,LOC107708588 other downstream 2851 4572945 ~ 4589827 (+)
LOC122361055 LOC107565287,LOC107667819 other downstream 328278 4898372 ~ 4899380 (+)
LOC122355892 foxc1,foxc1a,LOC107745890,LOC107576425,LOC107726170,LOC107563085,LOC105019236 other downstream 339035 4909129 ~ 4911176 (+)
G9630 LOC107705308,LOC107564255,LOC107728403 other downstream 1038233 5608327 ~ 5609276 (+)
dusp28 dusp28,LOC107737412,LOC107695162,LOC107653509,LOC107705300,LOC107564257 other downstream 1253899 5823993 ~ 5826286 (+)

Expression


Co-expression Network