LOC122361055 (LOC107565287,LOC107667819)


Basic Information

Item Value
gene id LOC122361055
gene name LOC107565287,LOC107667819
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4898372 ~ 4899380 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU14280
CTCCAGTCTCTCTCAGCTCCTCCTGAATCTACAGACATAAATGATGATCTCTTCGGTTCTCTTGTTTCTTTTGATGATCTGAGAGAATCTGTTCATCAGCTGAGAGACAAACTGGAGGATTTCTGTAAAGAAGAGCTGAAGAAGATCTCAGACAGAGGTAAAGTCCTGGAGATTGATCTGCTCTCAGAAACCAGTCCATCATCATCTCATATCAGGGAGAACATCATATCAGAAATGTCTTAGGAATGATGCAGGATCATGAGAATAACTCTGTTTCCACAGTCACCTTCACCAACATTGTTCCCAGAACCAGGAACCACTTCCTACAATATTCCCGTCAGTTCACTCTGGATCTGAACACAGTGAATGAACTTCTTCGTCTGTCTGAGAACAACAGAATCGTTCCTCACACTAACACAGTCCagtcgtatcctgatcatccagacagatttgaaggtgtgtgtcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagctGGAGTGGAGcggatgtgtgtgtatatcagtgtcatataagagcATCAGCAGGAAAGGACGGCGTAATGAAGgtgtgtttggatctaatgatcagtcctggagtttgatctGCTCTCCATCCAGAtactcattcagacacaataaGATAAAGACTGATCTCTCTGTAGAGTCCTGTAGAGtgtttgatgatgatga
>XM_043261999.1
tgagttttttctgttttctgtagagTCTCCAGTCTCTCTCAGCTCCTCCTGAATCTACAGACATAAATGATGATCTCTTCGGTTCTCTTGTTTCTTTTGATGATCTGAGAGAATCTGTTCATCAGCTGAGAGACAAACTGGAGGATTTCTGTAAAGAAGAGCTGAAGAAGATCTCAGACAGAGGTAAAGTCCTGGAGATTGATCTGCTCTCAGAAACCAGTCCATCATCATCTCATATCAGGGAGAACATCATATCAGAAATGTCTTAGGAATGATGCAGGATCATGAGAATAACTCTGTTTCCACAGTCACCTTCACCAACATTGTTCCCAGAACCAGGAACCACTTCCTACAATATTCCCGTCAGTTCACTCTGGATCTGAACACAGTGAATGAACTTCTTCGTCTGTCTGAGAACAACAGAATCGTTCCTCACACTAACACAGTCCagtcgtatcctgatcatccagacagatttgaaggtgtgtgtcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagctGGAGTGGAGcggatgtgtgtgtatatcagtgtcatataagagcATCAGCAGGAAAGGACGGCGTAATGAAGgtgtgtttggatctaatgatcagtcctggagtttgatctGCTCTCCATCCAGAtactcattcagacacaataaGATAAAGACTGATCTCTCTGTAGAGTCCTGTAGAGtgtttgatgatgatgatgatgatgatgatgatgatggtggtggtatCAGGAGAGTAGGAGTGTTTGTGGATCATGGAGCAGGTCCTTCTACAGCAGCGTCTCTGACATAA

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14280 False 706 TUCP 0.38 2 4898398 4899286
XM_043261999.1 True 826 mRNA 0.44 2 4898372 4899380

Neighbor

gene id symbol gene type direction distance location
foxf2a LOC107671725,LOC107745889,LOC107563086,LOC107685282,LOC107724048 coding upstream 6611 4888123 ~ 4891761 (+)
LOC122328338 foxq1,LOC107685281,LOC107745888,LOC107563088,LOC107671726,LOC107724052 coding upstream 12407 4884610 ~ 4885965 (+)
si:ch211-241e1.3 LOC107671555,LOC107705144,LOC107708592,LOC107565521,LOC107671659 coding upstream 348769 4540052 ~ 4549603 (+)
LOC122323895 LOC107565531,LOC107708594,LOC107671745,LOC100331149,LOC108436854 coding upstream 465653 4423377 ~ 4432719 (+)
LOC122323886 LOC107671547,LOC107565518 coding upstream 476205 4415924 ~ 4422167 (+)
pex5lb pex5lb,LOC107564246,LOC107653517,LOC107660316,LOC107550448,LOC107724753 coding downstream 831225 5730605 ~ 5763859 (+)
gnb4a LOC107705311,LOC107653516,LOC107564248,LOC108440866,LOC107724752,LOC107660315,LOC103030165,LOC107550449 coding downstream 865688 5765068 ~ 5779593 (+)
si:ch1073-184j22.1 si:ch1073-184j22.1,LOC107564249,LOC107653514,LOC107705312,LOC107660327,LOC107550431,LOC107724751,LOC108440865 coding downstream 894846 5794226 ~ 5800871 (+)
sft2d3 sft2d3,LOC107705299,LOC107653510,LOC107737414 coding downstream 907791 5807171 ~ 5808548 (+)
LOC122361161 NA coding downstream 937268 5836648 ~ 5838633 (+)
G9550 NA non-coding upstream 111003 4787046 ~ 4787369 (+)
G9536 NA non-coding upstream 244202 4653956 ~ 4654170 (+)
G9516 NA non-coding upstream 271202 4624762 ~ 4627170 (+)
G9397 NA non-coding upstream 377727 4478309 ~ 4520645 (+)
G9398 NA non-coding upstream 415748 4479477 ~ 4482624 (+)
G9568 NA non-coding downstream 13615 4912995 ~ 4913362 (+)
G9596 crhr2,LOC107660401,LOC107593817,LOC107671670,LOC100335005 non-coding downstream 175469 5074849 ~ 5111570 (+)
G9613 NA non-coding downstream 544154 5443534 ~ 5537567 (+)
G9632 tfr1a,LOC107705306,LOC107653522,LOC107564243,LOC107728405 non-coding downstream 678086 5577466 ~ 5591587 (+)
LOC122357632 NA non-coding downstream 705094 5604474 ~ 5607425 (+)
mylk4a mylk4,LOC107671735,LOC107562868,LOC107708588 other upstream 308545 4572945 ~ 4589827 (+)
G9416 wrnip1 other upstream 328278 4563897 ~ 4570094 (+)
G9361 NA other upstream 675260 4222239 ~ 4223112 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other upstream 1108033 3756171 ~ 3790339 (+)
G9173 NA other upstream 1219438 3676425 ~ 3678934 (+)
LOC122355892 foxc1,foxc1a,LOC107745890,LOC107576425,LOC107726170,LOC107563085,LOC105019236 other downstream 9749 4909129 ~ 4911176 (+)
G9630 LOC107705308,LOC107564255,LOC107728403 other downstream 708947 5608327 ~ 5609276 (+)
dusp28 dusp28,LOC107737412,LOC107695162,LOC107653509,LOC107705300,LOC107564257 other downstream 924613 5823993 ~ 5826286 (+)
trnag-gcc_20 NA other downstream 1321046 6220426 ~ 6220500 (+)
trnag-gcc_21 NA other downstream 1323065 6222445 ~ 6222519 (+)

Expression


Co-expression Network