G9632 (tfr1a,LOC107705306,LOC107653522,LOC107564243,LOC107728405)


Basic Information

Item Value
gene id G9632
gene name tfr1a,LOC107705306,LOC107653522,LOC107564243,LOC107728405
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 5577466 ~ 5591587 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU14378
GATGAAGAGGTAATTTTAGTGTCTTTTAGTCAGCAATCTTGGATGAGAATTTCTGCACTTTGTCATggttagataaaaaaaaaagtcttcacaGTTTAAATGAGTTGTTCAAGCTTTTTATTAATCACTTGCAGACTTATCATAAAACTGAGAATCAGTGCACGTGTAATGCTATAAACCAATTTTGTCTATAACAAAACGAGTACTGACAAAGCATTCTTCAGAAACAGGTTTTAAGATATGGATATACATAGACAATTGTGAAACTGCAAGTCATTACTAACAGAGTATAGAATACTctttaatttcatatatatatatatatgacctgTAAGTCTTACATGACATGAGTGTTTCTCACTTTTCGATtcatttttgtgtctttttacaACCATGGTATAACAGATGATACTGGTATCAAAAGGTGAATCTTAAAACCAATTAGCCGAATAGATTTATAATTTAATCTCACTCCGATTTGCAAGTAAAACAGCAAAAGTGAAGTTAAGTACAAGAAagaacaaagaagaagaaaaaagaaaatatttgaaaggCTTGACCATAATCTCCAAGGCAGAAATAACAACacaccaaaaacaaaagaactATGAAAACCGAATaagagaacagaacagaatctTTCAGAAGCCCATGACAGGATCTTACAGAGAATGTTTCTATAGTCTTTTATTTCTGCTGTGATCATCACCCACTCCATATTTGCTTAATCCAATGCTTAAGAAGGTAACAGCACTTCACTGTGTATGAAAAACTGACGGATTACATGACTCACAACAGATAACTACTATGGTAAGAGTGTGAATATAGATGATTTTGTACATCATCATGGGAAACACAGTTCCCAATACTTACATCCACATCACAGTGAAATATGAGGGGCACTGCCCTCGATATCAACACATCGGTAGGCAAAAACTACCATCATCTTCGCATTATGGAAGGCACTGCTCCCGATAATAATTCTGGATCAGGTAACATTGATTCAAAAGGAGAGTGCCAAAGACTGATACATAGCAGTAActtactgatttttttaattatcatttaagaAATACAATGTAGTCTGTGGTCATAGCTTTTGAAAACAAGGTCATATCCATAGCAGATGCTGCTTTCACATTTCGACAGTATAACTGTCATAATTATGGAAGGCACTGCTTCCgataattatacatttgtttaaaaaaaggcggtacaaaatgctatttatagTGATCCCTGtcactgataaataaaaaaactaataaatagaATTTCTGAGCCACATAGGAAAGCCTCTTTCTATTTGACAGAATTGATCCAAAGAGCCCCTGAAAAAGTGTATCCAACCAGAAAGTTGGAAAAATACTGTACTTTACGAGGTGTTTTATGATCACAGGTAAGTTAGgttacaaacattaaaatgtcaatgGTTGATTGTCTAACTGGAGTCTGTATAAAAACCCCTCTAAATCCAGACTGTTCAGGTATTATGCAAGAAGTTCCTAAAAGGAGtctcaaaaaaaagattttgaaaataaaccagTAACACATTCCGAATTTGTATAATCAAAACTAGATCTCAAAGAAAAACTTCCTCCAAGAATGAGTTTTCTACCTTCATGTCAATCAAACCCCTTATGAATTTTGATCTATGATGCAGAGGGTGAATTATAGCACATGAGTGATGGGAGCTACTTTTATAATATGTTACGCccctgtgtctttttttaagtttgatagctgcagttattattattgtatactTCAAACATCTTTCACAGAAGgggtctggaatgacatgaagatgagtaaatgacacaatgtttcatttttggatcAACTACTGCTGTAAATACTGATGTAAACCACTTATCCTAAATTCACGTTAATAGAGcaccaaaatcattttttgctttaattttcctttttttccttgaGTGATGGGTTCAAAGCTATCACACAGTTAAAGAGGTGAGTTGATTCCACTTGTCTAAATTTCATTATCCATATCCCATACTTCCCCTGCTAATGCATTGGCACAGCCCTGGATGGTCCAAGTGGCAAGAGCAAACTGATTCTTGAATTGGTCGATGTCAGCAGATTCAAGCCCTCCTTTAATAGCTTCAAGGTGATCCACCAGAGCTGCCAGAGTGTGTGATCCGGAGCCCAGCAGAATGTGCCGGAATAGACTCTCCCGCGGAGACACGTAAGGAGAGAGAAAACTGCTTTCCACCTT
>TU14381
tttttttttttttttttTTCAAGCTTTTTATTAATCACTTGCAGACTTATCATAAAACTGAGAATCAGTGCACGTGTAATGCTATAAACCAATTTTGTCTATAACAAAACGAGTACTGACAAAGCATTCTTCAGAAACAGGTTTTAAGATATGGATATACATAGACAATTGTGAAACTGCAAGTCATTACTAACAGAGTATAGAATACTctttaatttcatatatatatatatatatgacctgTAAGTCTTACATGACATGAGTGTTTCTCACTTTTCGATtcatttttgtgtctttttacaACCATGGTATAACAGATGATACTGGTATCAAAAGGTGAATCTTAAAACCAATTAGCCGAATAGATTTATAATTTAATCTCACTCCGATTTGCAAGTAAAACAGCAAAAGTGAAGTTAAGTACAAGAAagaacaaagaagaagaaaaaagaaaatatttgaaaggCTTGACCATAATCTCCAAGGCAGAAATAACAACacaccaaaaacaaaagaactATGAAAACCGAATaagagaacagaacagaatctTTCAGAAGCCCATGACAGGATCTTACAGAGAATGTTTCTATAGTCTTTTATTTCTGCTGTGATCATCACCCACTCCATATTTGCTTAATCCAATGCTTAAGAAGGTAACAGCACTTCACTGTGTATGAAAAACTGACGGATTACATGACTCACAACAGATAACTACTATGGTAAGAGTGTGAATATAGATGATTTTGTACATCATCATGGGAAACACAGTTCCCAATACTTACATCCACATCACAGTGAAATATGAGGGGCACTGCCCTCGATATCAACACATCGGTAGGCAAAAACTACCATCATCTTCGCATTATGGAAGGCACTGCTCCCGATAATAATTCTGGATCAGGTAACATTGATTCAAAAGGAGAGTGCCAAAGACTGATACATAGCAGTAActtactgatttttttaattatcatttaagaAATACAATGTAGTCTGTGGTCATAGCTTTTGAAAACAAGGTCATATCCATAGCAGATGCTGCTTTCACATTTCGACAGTATAACTGTCATAATTATGGAAGGCACTGCTTCCgataattatacatttgtttaaaaaaaggcggtacaaaatgctatttatagTGATCCCTGtcactgataaataaaaaaactaataaatagaATTTCTGAGCCACATAGGAAAGCCTCTTTCTATTTGACAGAATTGATCCAAAGAGCCCCTGAAAAAGTGTATCCAACCAGAAAGTTGGAAAAATACTGTACTTTACGAGGTGTTTTATGATCACAGGTAAGTTAGgttacaaacattaaaatgtcaatgGTTGATTGTCTAACTGGAGTCTGTATAAAAACCCCTCTAAATCCAGACTGTTCAGGTATTATGCAAGAAGTTCCTAAAAGGAGtctcaaaaaaaagattttgaaaataaaccagTAACACATTCCGAATTTGTATAATCAAAACTAGATCTCAAAGAAAAACTTCCTCCAAGAATGAGTTTTCTACCTTCATGTCAATCAAACCCCTTATGAATTTTGATCTATGATGCAGAGGGTGAATTATAGCACATGAGTGATGGGAGCTACTTTTATAATATGTTACGCccctgtgtctttttttaagtttgatagctgcagttattattattgtatactTCAAACATCTTTCACAGAAGgggtctggaatgacatgaagatgagtaaatgacacaatgtttcatttttggatcAACTACTGCTGTAAATACTGATGTAAACCACTTATCCTAAATTCACGTTAATAGAGcaccaaaatcattttttgctttaattttcctttttttccttgaGTGATGGGTTCAAAGCTATCACACAGTTAAAGAGGTGAGTTGATTCCACTTGTCTAAATTTCATTATCCATATCCCATACTTCCCCTGCTAATGCATTGGCACAGCCCTGGATGGTCCAAGTGGCAAGAGCAAACTGATTCTTGAATTGGTCGATGTCAGCAGATTCAAGCCCTCCTTTAATAGCTTCAAGGTGATCCACCAGAGCTGCCAGAGTGTGTGATCCGGAGCCCAGCAGAATGTGCCGGAATAGACTCTCCCGCGGAGACACGTAAGGAGAGAGAAAACTGCTTTCCACCTT

Function

symbol description
tfr1a Predicted to enable transferrin receptor activity. Acts upstream of or within cellular iron ion homeostasis; hemoglobin biosynthetic process; and hemopoiesis. Predicted to be located in melanosome and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in blood; blood island; intermediate cell mass of mesoderm; presumptive blood; and ventral mesoderm. Human ortholog(s) of this gene implicated in breast carcinoma; immunodeficiency 46; multiple myeloma; and ovarian cancer. Orthologous to human TFRC (transferrin receptor).

NR:

description
PREDICTED: transferrin receptor protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14378 True 2239 lncRNA 0.49 2 5589281 5591587
TU14381 False 2151 lncRNA 0.37 3 5577466 5591587

Neighbor

gene id symbol gene type direction distance location
foxf2a LOC107671725,LOC107745889,LOC107563086,LOC107685282,LOC107724048 coding upstream 685705 4888123 ~ 4891761 (+)
LOC122328338 foxq1,LOC107685281,LOC107745888,LOC107563088,LOC107671726,LOC107724052 coding upstream 691501 4884610 ~ 4885965 (+)
si:ch211-241e1.3 LOC107671555,LOC107705144,LOC107708592,LOC107565521,LOC107671659 coding upstream 1027863 4540052 ~ 4549603 (+)
LOC122323895 LOC107565531,LOC107708594,LOC107671745,LOC100331149,LOC108436854 coding upstream 1144747 4423377 ~ 4432719 (+)
LOC122323886 LOC107671547,LOC107565518 coding upstream 1155299 4415924 ~ 4422167 (+)
pex5lb pex5lb,LOC107564246,LOC107653517,LOC107660316,LOC107550448,LOC107724753 coding downstream 139018 5730605 ~ 5763859 (+)
gnb4a LOC107705311,LOC107653516,LOC107564248,LOC108440866,LOC107724752,LOC107660315,LOC103030165,LOC107550449 coding downstream 173481 5765068 ~ 5779593 (+)
si:ch1073-184j22.1 si:ch1073-184j22.1,LOC107564249,LOC107653514,LOC107705312,LOC107660327,LOC107550431,LOC107724751,LOC108440865 coding downstream 202639 5794226 ~ 5800871 (+)
sft2d3 sft2d3,LOC107705299,LOC107653510,LOC107737414 coding downstream 215584 5807171 ~ 5808548 (+)
LOC122361161 NA coding downstream 245061 5836648 ~ 5838633 (+)
G9613 NA non-coding upstream 39899 5443534 ~ 5537567 (+)
G9596 crhr2,LOC107660401,LOC107593817,LOC107671670,LOC100335005 non-coding upstream 465896 5074849 ~ 5111570 (+)
G9568 NA non-coding upstream 664104 4912995 ~ 4913362 (+)
G9550 NA non-coding upstream 790097 4787046 ~ 4787369 (+)
G9536 NA non-coding upstream 923296 4653956 ~ 4654170 (+)
LOC122357632 NA non-coding downstream 12887 5604474 ~ 5607425 (+)
G9660 NA non-coding downstream 111030 5702617 ~ 5705885 (+)
G9663 NA non-coding downstream 125591 5717178 ~ 5717406 (+)
G9671 NA non-coding downstream 133114 5724701 ~ 5725016 (+)
G9667 proc,LOC107705314,LOC107653506,LOC107737413 non-coding downstream 178471 5770058 ~ 5831115 (+)
LOC122355892 foxc1,foxc1a,LOC107745890,LOC107576425,LOC107726170,LOC107563085,LOC105019236 other upstream 666290 4909129 ~ 4911176 (+)
LOC122361055 LOC107565287,LOC107667819 other upstream 678086 4898372 ~ 4899380 (+)
mylk4a mylk4,LOC107671735,LOC107562868,LOC107708588 other upstream 987639 4572945 ~ 4589827 (+)
G9416 wrnip1 other upstream 1007372 4563897 ~ 4570094 (+)
G9361 NA other upstream 1354354 4222239 ~ 4223112 (+)
G9630 LOC107705308,LOC107564255,LOC107728403 other downstream 16740 5608327 ~ 5609276 (+)
dusp28 dusp28,LOC107737412,LOC107695162,LOC107653509,LOC107705300,LOC107564257 other downstream 232406 5823993 ~ 5826286 (+)
trnag-gcc_20 NA other downstream 628839 6220426 ~ 6220500 (+)
trnag-gcc_21 NA other downstream 630858 6222445 ~ 6222519 (+)
sst2 LOC107549725,LOC107710806 other downstream 775590 6367177 ~ 6367954 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location