lrrc53 (LOC107700485,LOC107588905,LOC107716924)


Basic Information

Item Value
gene id lrrc53
gene name LOC107700485,LOC107588905,LOC107716924
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7098303 ~ 7105792 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU14819
GCTCAGATCACTCACAGAGACACAGCATGACTGTATTACAGTGGAACTCTTGAGAATCTAATACTGAGGAAAGAATTGCAAACGTGCTCGGACCCTCAGCACATGGATAAGAGTGTTTGACATTTCGCTGCTCCATGTGTGTCAGCATCTCCTGGCAACAGAGGTCACATGAGTGCAGCATCAGGGGAATTTATATAATTGTTGTTGCAAAGCAGATCCAAGGCCATGGACCACTTAAGCCATTTTTGGAAGTCAAACACTATCTGACATCAGTGTCAAATCATGAGAAGTGTCTGCCTGCTACTGATGGTGATCTCTCAAGTTCAGCGGTCGTTACTCTGCCCTTCTTC
>XM_043258735.1
ttgtcAGACCAGTAGTGATTCAGTTGCATTGAATTATTgtcattaattataaaaaagagTTTAATTCAGCTGGAAAGGAGTTCTTGAGAAAACAATAAAGTCGTCATCCATCTCAGTTCAGTATTATGTGTCCCCagctaagcaagccagaggcaacagtggcaaggaaccCAAACTCCATCAGTAACagaaatggattttaaaaaccTCAGGCTTAGTTGGCAGACCAGTTCTTTTCTGTCCAGGTGAACCAACCTGGTGTGGTTTAATTATAGGCTGCAATCACAAATCAGATTGTGGAATAATATCATTTAGAATATTCATCAAATTTCTACTGCTTACATAATGGGATGCTTCACATGGTGAAGGAGGCGAAGCTGACTACAGGGACTGTGTAGATGATTTGTGAGGTTCTTGTGGTAGACGATAGCTATTGTGGCAGTGAGGTTTACAAGGGATTTGTCTCTATTGGCTCGTTTAGGTGTCATGGTCTCCACATACATTCAGGTCCGTTGTGAGGTGTAGTCTGTTGTGCATGTGTACCATCTGATCTGAATGCAGACTGGATAAGATAACCCAATAAGGATGAAGCAGAGACTAATAAAAGCATACACTGAGTCTTATAAGAAGTGTTCCCGGTTCCTTATCTATGCAAGCTAAATGTGATTTTGTGTTATATGTATGCTGTAGAAGAACATTGAGATTAACCAGTCAGATTTAAAGAACcaatttatagtttttgtgaagtttaggcttacaatcagtgtttggtgcttgtacatcagtatcATTCAtctgttattttctttgattttaggaattactcatgggtaagttATTAAGTTAAGTTGTTTAGTTTAGATGTAGGGATTTGGTCAAGactaaaatgttgttccagggtcaaaaaaatatgttgacctaTAGGAACACAtcacactcagcaaaatcaggactTGTGTTTGTTAGTTTAAACAGATaggtttttaatctaaatttaaactGACAAAGTGTGTCTGCCTCCAAAACATATTCTTGATATTATCAAATGACCAGTATCAGAACAGAGACcataatatactgtacatgagGAGCTGTAAAGTGAAAGCTTCCTCAAGTACTGGGGAGCTAAACAATTTAGAGCGTTTTAGGTAATCAGAAggattttaaagatgtttaaaaaaaattaaatgtaatattcaatATAGGGAGCCAATTTAGTTTTGACAACTGAGCTGCAATCTAAATATGAGCTTATAACTTCTTTTCTGGACACTCTACATTTCTGAGATCAGGTAACATGCTGGTTCAACAGGTGTCCCATCTGTGCTCAGATCACTCACAGAGACACAGCATGACTGTATTACAGTGGAACTCTTGAGAATCTAATACTGAGGAAAGAATTGCAAACGTGCTCGGACCCTCAGCACATGGATAAGAGTGTTTGACATTTCGCTGCTCCATGTGTGTCAGCATCTCCTGGCAACAGAGGTCACATGAGTGCAGCATCAGGGGAATTTATATAATTGTTGTTGCAAAGCAGATCCAAGGCCATGGACCACTTAAGCCATTTTTGGAAGTCAAACACTATCTGACATCAGTGTCAAATCATGAGAAGTGTCTGCCTGCTACTGATGGTGATCTCTCAAGTTCAGCGGTCGTTACTCTGCCCTTCTTCTTGTGtggtgtgttctgaagatgTCATCATCTGTCATAAACTGTTAAACATTATTGATGCACCAGGCTCTACTAAAGCTTTGATGCTCACCGATGGGTTCATTGATTCTGTGGACAACATGGTTCTCTCTGAATTATCCAACATGAATGTTCTGGCACTCAGCAACAACGCCATTTCTAGCATCATGGAGAATGCCTTTCAAAACCTCTCTTTTCTAACAACGCTGTTGCTGGACCATAACCGCATCTCCAGCCAATCCCTGGACAGCTCCACATTTTCCTGGCTTCACAGATTGGAGACTCTCCAGCTTAGTAACAACAATTTGAATGACATTGATGGCTCCTGGTTCCAAAGCTCTCAAACTTTAAAGACACTTCAGCTAGAGGGAAACGTCATCAACTACTTGAACTCCACAACCTTTGCCCATGCTGATCTAAGGAACCTGGAAACGCTGGACTTGTCTAACAACCTCATTGTGTACTTAGGACGTGATAGCTTCAGAAGGCTTCCTCGTCTCCACACGCTCGATCTGTCCCGTAATCATCTACACAGTGCTCCGGATGCCTTCTCGTATCTGTCATGGCTTTCATTGCTGAACCTTGATTTGAACCTCTGGAATTGTACATGCGAGATGAGAGAGCTGGCCTCATTTCTCAACAGTTACATTCAGGCTCCTGAAAAAGTATTGTCCAATGGGCAGAGGATGATTTGTGTGAATACAGATAATGCAGCTGTGCAAACTGTGCTGGAATTGACTGACACTAACTGTGTCCCACCAAACAGGAATATAACAGTGGCTAAAAGATATAAACCTTCTGAGCAATATATTAGAAATGTTGCTATTGccattgtattttcatttttggGTGGTATTGGGATCACCCTGGGAATAATTGCCATTGCATACCAAAAACTCAGTAAGAAATTTGAACTGGTGCAGGAGAAAAACAGAGATGGGGAGTCTGGCCTGGAATCAACTCAGTTGAATTTCTGTGAAGCCAAGGACACTCTAACTAAGTGCCATGCACTGTACAACAGCAACTACAAATCTCATCAGCCCTGGGACAGAGAAGACTCTTCTTATCTGGGATCGCACATGCTGGATAGTCATTTCACCTGTCACAAGTGCAGCTCTACAGCACAAGCAGTAGGAAAGCACAAAAGAGAAATAGTCCTGCAGAAAGCAACTCATGTAGGTGAACAGCTGGCTAATCGCCAACATGAATTGAATGATCAACATTCTGTGTTACAACAGAGGATCAAAGAGATAATTGGACAAAGACACAATGAGAGCGGAACAGGCCTTCCAAACAGCTATCTGAGCAGTCAGAGTACTTCTTCCCAACATCGTGGGGGTTCAAACGACATCTCAGCTGTCAGAATACAGCAGCTGGCCCTCAGTAATCATTTCTCAGCCCTCCAGAGAGGCGCATTCAGACCCCCAGACCAAATCCACAATGAAATAACTGAAGGAAATCACTCACTGTTAAAGCACAAGGCTGAAGACGTTGGTGAACAACCGATTTGCCAAACCATCAGCTGTCTGCACTGTCATCAGACTTATGAATACAGACAAGCTGGAAGTAATAACCAGAACATGTTTACAACTCACTCACAGAACACAGTTCAAAACGGAGCAGAATTGTACAATGCCATGCTATACAAAGACAACTTAGGTTATGACAAGTCAAACACTGGGAGACATGGTGCAAGTCAAGATACTAAGTTGGGTTTTAAGTTAGATCCTCAAAGAAGTGTTACTTTTGATCTAGCTGGGACAGAGGAACATGTCCTCACCTTAATGGCTGATAGATACAAAAAGGAAAGCCGGATGAAGAACTTTAAAACATCTGCACAGAAAACCACACGAAAGACTAAAAGCAACACACAAGGACACTTAAATGCCCAGAAAACTAGAGGACAGGCAAAGAGGACACtgaaagttaaattaaatttaaacccCCTTCGAAAAAGCAGAGTTCATCCAAAGTCCATTGACAAAGGAGATATTGAAAAAGACAAGATGTACAAAAAgagtaagaaagaaaaactgaaaagcaaaaaggacaaaaaagatcaacttaaaatgaatagaaCTAGTGAAAAATCTAAAGATAACATTGAATGTTCAGGAAGTGAGGAAGAGAAAAATGATACTATGCAAGATTTCTCTAAAAAGAAGCATACTAAAAAAGGAAACAAGGAATCAAAGTCCCTGTCTAAGGATACAGATGATGTTACTACAGAAAAAggtcaaaattatatttctgttcAGGGAGAAACCGAAATGGCATCAACACTCCCACTAGCGGTCGGTTTAGCTCTTCCAAATGATCACAGCAGTCTTACAGATCCAAATATTGCACTTCCTGTGGGTGAATCCACAGCTCCACAGGATGTATTGGATCAGTCCAGCAGTTCAGACCTGATTAGCTCTGGTGCACCTGTCATCCAAGAATATGTATCTTCAGCTGAGGGTTCACCAAAGAGGAAGTTAAGACTCATTTTACCTGAAAAAACCAACAGGCCACAAACAGCACTTGATAAGAAAATCAGATAATGTTATTTC
>XM_043258743.1
CTCCACAGGAGGAATCGGGTGAAAgatcatgcatgttttataacTTTACCTTCCTCATCTGTCTTGCAGTCAGCATCTCCTGGCAACAGAGGTCACATGAGTGCAGCATCAGGGGAATTTATATAATTGTTGTTGCAAAGCAGATCCAAGGCCATGGACCACTTAAGCCATTTTTGGAAGTCAAACACTATCTGACATCAGTGTCAAATCATGAGAAGTGTCTGCCTGCTACTGATGGTGATCTCTCAAGTTCAGCGGTCGTTACTCTGCCCTTCTTCTTGTGtggtgtgttctgaagatgTCATCATCTGTCATAAACTGTTAAACATTATTGATGCACCAGGCTCTACTAAAGCTTTGATGCTCACCGATGGGTTCATTGATTCTGTGGACAACATGGTTCTCTCTGAATTATCCAACATGAATGTTCTGGCACTCAGCAACAACGCCATTTCTAGCATCATGGAGAATGCCTTTCAAAACCTCTCTTTTCTAACAACGCTGTTGCTGGACCATAACCGCATCTCCAGCCAATCCCTGGACAGCTCCACATTTTCCTGGCTTCACAGATTGGAGACTCTCCAGCTTAGTAACAACAATTTGAATGACATTGATGGCTCCTGGTTCCAAAGCTCTCAAACTTTAAAGACACTTCAGCTAGAGGGAAACGTCATCAACTACTTGAACTCCACAACCTTTGCCCATGCTGATCTAAGGAACCTGGAAACGCTGGACTTGTCTAACAACCTCATTGTGTACTTAGGACGTGATAGCTTCAGAAGGCTTCCTCGTCTCCACACGCTCGATCTGTCCCGTAATCATCTACACAGTGCTCCGGATGCCTTCTCGTATCTGTCATGGCTTTCATTGCTGAACCTTGATTTGAACCTCTGGAATTGTACATGCGAGATGAGAGAGCTGGCCTCATTTCTCAACAGTTACATTCAGGCTCCTGAAAAAGTATTGTCCAATGGGCAGAGGATGATTTGTGTGAATACAGATAATGCAGCTGTGCAAACTGTGCTGGAATTGACTGACACTAACTGTGTCCCACCAAACAGGAATATAACAGTGGCTAAAAGATATAAACCTTCTGAGCAATATATTAGAAATGTTGCTATTGccattgtattttcatttttggGTGGTATTGGGATCACCCTGGGAATAATTGCCATTGCATACCAAAAACTCAGTAAGAAATTTGAACTGGTGCAGGAGAAAAACAGAGATGGGGAGTCTGGCCTGGAATCAACTCAGTTGAATTTCTGTGAAGCCAAGGACACTCTAACTAAGTGCCATGCACTGTACAACAGCAACTACAAATCTCATCAGCCCTGGGACAGAGAAGACTCTTCTTATCTGGGATCGCACATGCTGGATAGTCATTTCACCTGTCACAAGTGCAGCTCTACAGCACAAGCAGTAGGAAAGCACAAAAGAGAAATAGTCCTGCAGAAAGCAACTCATGTAGGTGAACAGCTGGCTAATCGCCAACATGAATTGAATGATCAACATTCTGTGTTACAACAGAGGATCAAAGAGATAATTGGACAAAGACACAATGAGAGCGGAACAGGCCTTCCAAACAGCTATCTGAGCAGTCAGAGTACTTCTTCCCAACATCGTGGGGGTTCAAACGACATCTCAGCTGTCAGAATACAGCAGCTGGCCCTCAGTAATCATTTCTCAGCCCTCCAGAGAGGCGCATTCAGACCCCCAGACCAAATCCACAATGAAATAACTGAAGGAAATCACTCACTGTTAAAGCACAAGGCTGAAGACGTTGGTGAACAACCGATTTGCCAAACCATCAGCTGTCTGCACTGTCATCAGACTTATGAATACAGACAAGCTGGAAGTAATAACCAGAACATGTTTACAACTCACTCACAGAACACAGTTCAAAACGGAGCAGAATTGTACAATGCCATGCTATACAAAGACAACTTAGGTTATGACAAGTCAAACACTGGGAGACATGGTGCAAGTCAAGATACTAAGTTGGGTTTTAAGTTAGATCCTCAAAGAAGTGTTACTTTTGATCTAGCTGGGACAGAGGAACATGTCCTCACCTTAATGGCTGATAGATACAAAAAGGAAAGCCGGATGAAGAACTTTAAAACATCTGCACAGAAAACCACACGAAAGACTAAAAGCAACACACAAGGACACTTAAATGCCCAGAAAACTAGAGGACAGGCAAAGAGGACACtgaaagttaaattaaatttaaacccCCTTCGAAAAAGCAGAGTTCATCCAAAGTCCATTGACAAAGGAGATATTGAAAAAGACAAGATGTACAAAAAgagtaagaaagaaaaactgaaaagcaaaaaggacaaaaaagatcaacttaaaatgaatagaaCTAGTGAAAAATCTAAAGATAACATTGAATGTTCAGGAAGTGAGGAAGAGAAAAATGATACTATGCAAGATTTCTCTAAAAAGAAGCATACTAAAAAAGGAAACAAGGAATCAAAGTCCCTGTCTAAGGATACAGATGATGTTACTACAGAAAAAggtcaaaattatatttctgttcAGGGAGAAACCGAAATGGCATCAACACTCCCACTAGCGGTCGGTTTAGCTCTTCCAAATGATCACAGCAGTCTTACAGATCCAAATATTGCACTTCCTGTGGGTGAATCCACAGCTCCACAGGATGTATTGGATCAGTCCAGCAGTTCAGACCTGATTAGCTCTGGTGCACCTGTCATCCAAGAATATGTATCTTCAGCTGAGGGTTCACCAAAGAGGAAGTTAAGACTCATTTTACCTGAAAAAACCAACAGGCCACAAACAGCACTTGATAAGAAAATCAGATAATGTTATTTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107700485

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14819 False 350 lncRNA 0.36 4 7099628 7100661
XM_043258735.1 True 4244 mRNA 0.40 7 7098303 7105792
XM_043258743.1 False 2847 mRNA 0.42 6 7100182 7105792

Neighbor

gene id symbol gene type direction distance location
cryz cryz,LOC107553670 coding upstream 127 7084134 ~ 7098176 (+)
penka LOC107748924,LOC107675675,LOC107573453 coding upstream 125132 6970493 ~ 6973171 (+)
bpnt2 impad1,LOC107663252,LOC107741594 coding upstream 218654 6856244 ~ 6879649 (+)
LOC122361319 NA coding upstream 256210 6840626 ~ 6842093 (+)
slc35d1b slc35d1b,LOC107690965,LOC107573325,LOC107745697,LOC108415103 coding upstream 609603 6474022 ~ 6488700 (+)
fam151a fam151a coding downstream 419 7106211 ~ 7111272 (+)
ssbp3a ssbp3,ssbp3a coding downstream 20479 7126271 ~ 7151771 (+)
cdcp2 cdcp2 coding downstream 52142 7157934 ~ 7161192 (+)
cdc7 cdc7,LOC107579524 coding downstream 58913 7164705 ~ 7170115 (+)
rpap2 rpap2,LOC107716948,LOC107716950 coding downstream 71143 7176935 ~ 7185014 (+)
G9940 NA non-coding upstream 47309 7050725 ~ 7050994 (+)
LOC122325829 NA non-coding upstream 55215 7042831 ~ 7043088 (+)
LOC122324999 NA non-coding upstream 61805 7036056 ~ 7036498 (+)
G9930 NA non-coding upstream 87709 7009360 ~ 7010594 (+)
G9928 NA non-coding upstream 96824 7001060 ~ 7001479 (+)
G10012 NA non-coding downstream 83863 7189655 ~ 7196400 (+)
G10013 NA non-coding downstream 91298 7197090 ~ 7199537 (+)
G10020 fam69a,fam69aa,LOC107716951,LOC107568082,LOC107694372,LOC108436064 non-coding downstream 100715 7206507 ~ 7209934 (+)
G10021 NA non-coding downstream 104946 7210738 ~ 7210938 (+)
G10094 NA non-coding downstream 314650 7420442 ~ 7421878 (+)
G9925 LOC107563058,LOC107549254 other upstream 111184 6986298 ~ 6987119 (+)
G9889 NA other upstream 405928 6691668 ~ 6692375 (+)
G9887 NA other upstream 407524 6690372 ~ 6690779 (+)
sst2 LOC107549725,LOC107710806 other upstream 730349 6367177 ~ 6367954 (+)
trnag-gcc_21 NA other upstream 875784 6222445 ~ 6222519 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other downstream 179878 7285670 ~ 7300101 (+)
G10108 NA other downstream 398830 7504622 ~ 7582385 (+)
G10212 NA other downstream 1001073 8106865 ~ 8107777 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 2056819 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 2640778 9746570 ~ 9751212 (+)

Expression


Co-expression Network