gng12a (gng12a,LOC107700509,LOC107716954,LOC107551713)


Basic Information

Item Value
gene id gng12a
gene name gng12a,LOC107700509,LOC107716954,LOC107551713
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7285670 ~ 7300101 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU14967
CGCCGATTGTGATTGGTCAGCGTAGGTGGAAGTGTTACAAACGGTGTCATTCACAAAGTAACAAGAATACATTACAATAGTGATAAAGAATgcaattaactttaaaatagcGTTTAGATTACTTTTTCAGGCAATTCTACACGCGGACCTTTTTGAAGTTCACGTAAAACCAGTTTTGGGGCGTATTTTCCGTTTCTTCACTGATTTATCAGCAGATCACACTTGAGAGATTGATTTAAAGttatATGGTTTCAAAAATGTCCTCTAAAATGGCGGGCTCAAACAACCTGGCACACGCTAGGAGGATGGTACAGCAACTGAGAGTCGAGGCCAGTATCGAAAGGATAAAGGTATCCAAGGCCTCAGCTGACCTCATGCGTTACTGTGGAGAAAACGCCAAATACGACCCCCTGCTCATGGGCATCCCTGCCTCAGAAAACCCCTTCAAGGACAAAAAGCCCTGCACTATATTGTAGTGCAATAAGCATTCATCTTATTTAATTACTTCTACTCAACTTTCCCTTAAGTCCAGCTCTAGCTCCTTAGTATAACTTTGTGTCGTGTCTTAACTGTATTTAGCtcttacagtatttattactgtaaataaactCCAATCAGTACTAATTAATTGCCTTTTTGGTAATTATTAGAATTGAATCTCATCTTCACCGGCGTGACTCGTCTTCTGTTTGGTTGTTTGGGCCAAACTGAAATTATTCCACGAAATGATCCTATAAATCGAGccatttagatgttttaaaatggcCTTAAGTTCCACTCTCCACCAAACAATgcctttttatttacacttttagtTTGAAATAGGGAAGTAGCACATCACATTATGATACGAGGAGCTTGCAACTACATTAACTGATTAAATCTCACTTAACGTGTGTTATGTGTTCCTCTAGCAACGCACATGAATAATGTCATAGCAAAGGGACTGACTGAAATAAATGGAATTTAAAGATCcatatttttatgaatctgATGTGACTTCTGCAAATCATCACTTTTTaagtgcatgctgggtaaaTACAACAATACAGTGAATCTCACACAAATACCGATTTGTTCTCTATGAAAGGCGGTACCACTATGTGCAAAACCATAAGAGACGAGTTTCTGTTGTGGTTTTCGTGAACTACCCTGCACTTTCAAACCATTGTGCCTTAGATTGAGCAAAGCGGTTCTTGCTTATTACAGATACACACGAATGAAAAGAggacatgttttattttttttgatgacaCTGAGCACATTTTCTGTTCCGTTTTAAGTGCCTTTTCATTCTGATTTAATGACTTTTGTAACACAACCACTGTTGTTTGATCTTGTCtatgaattgaattgaatggaTTTTTCCCAAAAAGGGCAGTTGTGAAACATTCACCTTTAATGGGCCAAGCATCCATATGTTGATGCTGCAGCGTCTGTGTTATTGTGGAGGCATCAGAGAAGTTACGCAGCGTTTGAGATTCACGACCAAATTCCTGTGACCTCAGTATCTCTGTGAAGAAACGAGTTTCCTTTTGTTCGTTTTGGTGTTTCTTTCTATTccaatttctgtatttttgcaaGCCTTCATAACATGTGCTATACGTACTGTACCTTGAAagaaagatttta
>XM_043216746.1
GTCttgtgcattcatttttgtactttttttaattgggaAAATGCATTTGACTCTGTTTGTGCTGTAAGGGTGTCGGGTTTGTGAATGCAGCGTCATGATCTACTGCCACTGCGTTCTGTTCTCTGATGCTGACGCACAGttatATGGTTTCAAAAATGTCCTCTAAAATGGCGGGCTCAAACAACCTGGCACACGCTAGGAGGATGGTACAGCAACTGAGAGTCGAGGCCAGTATCGAAAGGATAAAGGTATCCAAGGCCTCAGCTGACCTCATGCGTTACTGTGGAGAAAACGCCAAATACGACCCCCTGCTCATGGGCATCCCTGCCTCAGAAAACCCCTTCAAGGACAAAAAGCCCTGCACTATATTGTAGTGCAATAAGCATTCATCTTATTTAATTACTTCTACTCAACTTTCCCTTAAGTCCAGCTCTAGCTCCTTAGTATAACTTTGTGTCGTGTCTTAACTGTATTTAGCtcttacagtatttattactgtaaataaactCCAATCAGTACTAATTAATTGCCTTTTTGGTAATTATTAGAATTGAATCTCATCTTCACCGGCGTGACTCGTCTTCTGTTTGGTTGTTTGGGCCAAACTGAAATTATTCCACGAAATGATCCTATAAATCGAGccatttagatgttttaaaatggcCTTAAGTTCCACTCTCCACCAAACAATgcctttttatttacacttttagtTTGAAATAGGGAAGTAGCACATCACATTATGATACGAGGAGCTTGCAACTACATTAACTGATTAAATCTCACTTAACGTGTGTTATGTGTTCCTCTAGCAACGCACATGAATAATGTCATAGCAAAGGGACTGACTGAAATAAATGGAATTTAAAGATCcatatttttatgaatctgATGTGACTTCTGCAAATCATCACTTTTTaagtgcatgctgggtaaaTACAACAATACAGTGAATCTCACACAAATACCGATTTGTTCTCTATGAAAGGCGGTACCACTATGTGCAAAACCATAAGAGACGAGTTTCTGTTGTGGTTTTCGTGAACTACCCTGCACTTTCAAACCATTGTGCCTTAGATTGAGCAAAGCGGTTCTTGCTTATTACAGATACACACGAATGAAAAGAggacatgttttattttttttgatgacaCTGAGCACATTTTCTGTTCCGTTTTAAGTGCCTTTTCATTCTGATTTAATGACTTTTGTAACACAACCACTGTTGTTTGATCTTGTCtatgaattgaattgaatggaTTTTTCCCAAAAAGGGCAGTTGTGAAACATTCACCTTTAATGGGCCAAGCATCCATATGTTGATGCTGCAGCGTCTGTGTTATTGTGGAGGCATCAGAGAAGTTACGCAGCGTTTGAGATTCACGACCAAATTCCTGTGACCTCAGTATCTCTGTGAAGAAACGAGTTTCCTTTTGTTCGTTTTGGTGTTTCTTTCTATTccaatttctgtatttttgcaaGCCTTCATAACATGTGCTATACGTACTGTACCTTGAAagaaagattttattaaaattttgaaATAGTAAAA
>XM_043216752.1
ATGTCGTGCGCCGATTGTGATTGGTCAGCGTAGGTGGAAGTGTTACAAACGGTGTCATTCACAAAGTAACAAGAATACATTACAATAGTGATAAAGAATgcaattaactttaaaatagcGTTTAGATTACTTTTTCAGGCAATTCTACACGCGGACCTTTTTGAAGTTCACGTAAAACCAGTTTTGGGGCGTATTTTCCGTTTCTTCACTGATTTATCAGCAGATCACACTTGAGAGATTGATTTAAAGttatATGGTTTCAAAAATGTCCTCTAAAATGGCGGGCTCAAACAACCTGGCACACGCTAGGAGGATGGTACAGCAACTGAGAGTCGAGGCCAGTATCGAAAGGATAAAGGTATCCAAGGCCTCAGCTGACCTCATGCGTTACTGTGGAGAAAACGCCAAATACGACCCCCTGCTCATGGGCATCCCTGCCTCAGAAAACCCCTTCAAGGACAAAAAGCCCTGCACTATATTGTAGTGCAATAAGCATTCATCTTATTTAATTACTTCTACTCAACTTTCCCTTAAGTCCAGCTCTAGCTCCTTAGTATAACTTTGTGTCGTGTCTTAACTGTATTTAGCtcttacagtatttattactgtaaataaactCCAATCAGTACTAATTAATTGCCTTTTTGGTAATTATTAGAATTGAATCTCATCTTCACCGGCGTGACTCGTCTTCTGTTTGGTTGTTTGGGCCAAACTGAAATTATTCCACGAAATGATCCTATAAATCGAGccatttagatgttttaaaatggcCTTAAGTTCCACTCTCCACCAAACAATgcctttttatttacacttttagtTTGAAATAGGGAAGTAGCACATCACATTATGATACGAGGAGCTTGCAACTACATTAACTGATTAAATCTCACTTAACGTGTGTTATGTGTTCCTCTAGCAACGCACATGAATAATGTCATAGCAAAGGGACTGACTGAAATAAATGGAATTTAAAGATCcatatttttatgaatctgATGTGACTTCTGCAAATCATCACTTTTTaagtgcatgctgggtaaaTACAACAATACAGTGAATCTCACACAAATACCGATTTGTTCTCTATGAAAGGCGGTACCACTATGTGCAAAACCATAAGAGACGAGTTTCTGTTGTGGTTTTCGTGAACTACCCTGCACTTTCAAACCATTGTGCCTTAGATTGAGCAAAGCGGTTCTTGCTTATTACAGATACACACGAATGAAAAGAggacatgttttattttttttgatgacaCTGAGCACATTTTCTGTTCCGTTTTAAGTGCCTTTTCATTCTGATTTAATGACTTTTGTAACACAACCACTGTTGTTTGATCTTGTCtatgaattgaattgaatggaTTTTTCCCAAAAAGGGCAGTTGTGAAACATTCACCTTTAATGGGCCAAGCATCCATATGTTGATGCTGCAGCGTCTGTGTTATTGTGGAGGCATCAGAGAAGTTACGCAGCGTTTGAGATTCACGACCAAATTCCTGTGACCTCAGTATCTCTGTGAAGAAACGAGTTTCCTTTTGTTCGTTTTGGTGTTTCTTTCTATTccaatttctgtatttttgcaaGCCTTCATAACATGTGCTATACGTACTGTACCTTGAAagaaagattttattaaaattttgaaATAGTAAAA

Function

symbol description
gng12a Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be part of heterotrimeric G-protein complex. Orthologous to human GNG12 (G protein subunit gamma 12).

NR:

description
guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12-like isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K04347 GNG12; guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12

RNA

RNA id representative length rna type GC content exon number start site end site
TU14967 False 1632 lncRNA 0.47 3 7285678 7300079
XM_043216746.1 False 1552 mRNA 0.38 3 7297986 7300101
XM_043216752.1 True 1662 mRNA 0.38 3 7285670 7300101

Neighbor

gene id symbol gene type direction distance location
wls wls,LOC107684934 coding upstream 1860 7269715 ~ 7283810 (+)
scinlb LOC107588891,LOC107700536,LOC107658127,LOC107568091,LOC107743367,LOC108280481,LOC106568976 coding upstream 17265 7257164 ~ 7268405 (+)
ccdc18 ccdc18,LOC107716953,LOC107658134,LOC107568077 coding upstream 31099 7236939 ~ 7254571 (+)
mtf2 mtf2,LOC107743365,LOC107568093 coding upstream 49557 7225090 ~ 7236113 (+)
rpl5a rpl5,LOC107568084,LOC107694375,LOC107743362,LOC107716952,LOC103368809 coding upstream 79268 7203301 ~ 7206402 (+)
dmbx1a dmbx1a,LOC107588924,LOC107743378,LOC107700538,LOC107551711,LOC107684938,LOC108442545 coding downstream 40170 7340271 ~ 7346655 (+)
ptger4c ptger4c,LOC107716941,LOC107700513,LOC107743379,LOC107684935,LOC107564388,LOC107551710 coding downstream 88317 7388418 ~ 7391035 (+)
glula LOC107563291,LOC107710552,LOC107700548,LOC107732203,LOC107553252 coding downstream 1015030 8315131 ~ 8318467 (+)
elovl1a elovl1a,LOC107553254,LOC107732201,LOC107700551,LOC107710545,LOC108438881,LOC103047025 coding downstream 1073137 8373238 ~ 8382443 (+)
cc2d1b LOC107563292,LOC107710553,LOC107700553,LOC107677533 coding downstream 1086776 8386877 ~ 8403214 (+)
G10021 NA non-coding upstream 74732 7210738 ~ 7210938 (+)
G10020 fam69a,fam69aa,LOC107716951,LOC107568082,LOC107694372,LOC108436064 non-coding upstream 75736 7206507 ~ 7209934 (+)
G10013 NA non-coding upstream 86133 7197090 ~ 7199537 (+)
G10012 NA non-coding upstream 89270 7189655 ~ 7196400 (+)
G9940 NA non-coding upstream 234676 7050725 ~ 7050994 (+)
G10094 NA non-coding downstream 120341 7420442 ~ 7421878 (+)
G10112 NA non-coding downstream 181529 7481630 ~ 7555541 (+)
G10127 LOC107551707,LOC107564386,LOC107743377,LOC107684933,LOC107710549 non-coding downstream 267209 7567310 ~ 7670458 (+)
G10145 LOC107564386,LOC107743377,LOC107684933,LOC107700544 non-coding downstream 311167 7611268 ~ 7612187 (+)
G10179 NA non-coding downstream 485377 7785478 ~ 7785832 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 179878 7098303 ~ 7105792 (+)
G9925 LOC107563058,LOC107549254 other upstream 298551 6986298 ~ 6987119 (+)
G9889 NA other upstream 593295 6691668 ~ 6692375 (+)
G9887 NA other upstream 594891 6690372 ~ 6690779 (+)
sst2 LOC107549725,LOC107710806 other upstream 917716 6367177 ~ 6367954 (+)
G10108 NA other downstream 204521 7504622 ~ 7582385 (+)
G10212 NA other downstream 806764 8106865 ~ 8107777 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 1862510 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 2446469 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 2611527 9911628 ~ 9916861 (+)

Expression


Co-expression Network