G243


Basic Information

Item Value
gene id G243
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 646725 ~ 691607 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU306
CATGTTTATATATATATATATATATATATATATATATATATATATATACACACACACACACTCAAGTCCATTACAATACTCCAGAGGAGAAGACAGGAGGTCCATTTTCCTTTAACTGCTATGATTTTAAAAGAATTCCTTAGATAGATTTTATACAAAAGACAGCCAACATACCCCTCCCTTCACTGCAGTAAAGAAATCAAAAAAGAAAGGAAAAATCTTCCTGATCCAATGAACAGTTGGAAGCCCAGGAAATGGAAATGAAAAAGTAAACTGTAAAAAACACATCCCTCTATGTCCAGACTATCACAAATTGCAGGGAGAAAACAAAAATAACAATATAGCCCTCCCTTCCCAGTTCTCAAAAACAACAAGGAATGCTTTTAGAGCCATAAACATCTTCTACAGCAAAATTGATACGGACTGATCCTAAGCAGCGGGTACGTTGCTATAGCAACGATGAAGGTAAAGCAGGAGCTGTGGAGTGGAGGTTTGAATTTGGGGAGGAAAAGGGGCTACAGTTGAAATTTCAGTATGTACACCATGGCTGCCAGAGGGCTAAGAGTGGGGGGAGGTGCTCTGGTGAGGGGAGGCGTGGCTTAAAGAAAGCACTCCAATGGAAACCAACAAGATCTGTTTTTTTTTCTTAAGCTTTTTTCTTTTTTTAATCTTTTGAACGTTCAAAATCTCCCCTAACCTTAAGATGGAGAGGTGTAATTTTCTCCCATCATGATTCTAACTCCAAAACTACATTGCATACTTTTGTGTCCATTCCCGAGCTATTCTGTTGTACCTGTGAGGGAAGACAAATAAAGATATCAGCATCACA
>TU307
CATGTTTATATATATATATATATATATATATATATATATATATATATACACACACACACACACTCAAGTCCATTACAATACTCCAGAGGAGAAGACAGGAGGTCCATTTTCCTTTAACTGCTATGATTTTAAAAGAATTCCTTAGATAGATTTTATACAAAAGACAGCCAACATACCCCTCCCTTCACTGCAGTAAAGAAATCAAAAAAGAAAGGAAAAATCTTCCTGATCCAATGAACAGTTGGAAGCCCAGGAAATGGAAATGAAAAAGTAAACTGTAAAAAACACATCCCTCTATGTCCAGACTATCACAAATTGCAGGGAGAAAACAAAAATAACAATATAGCCCTCCCTTCCCAGTTCTCAAAAACAACAAGGAATGCTTTTAGAGCCATAAACATCTTCTACAGCAAAATTGATACGGACTGATCCTAAGCAGCGGGTACGTTGCTATAGCAACGATGAAGGTAAAGCAGGAGCTGTGGAGTGGAGGTTTGAATTTGGGGAGGAAAAGGGGCTACAGTTGAAATTTCAGTATGTACACCATGGCTGCCAGAGGGCTAAGAGTGGGGGGAGGTGCTCTGGTGAGGGGAGGCGTGGCTTAAAGAAAGCACTCCAATGGAAACCAACAAGATCTGTTTTTTTTTCTTAAGCTTTTTTCTTTTTTTAATCTTTTGAACGTTCAAAATCTCCCCTAACCTTAAGATGGAGAGGTGTAATTTTCTCCCATCATGATTCTAACTCCAAAACTACATTGCATACTTTTGTGTCCATTCCCGAGCTATTCTGTTGTACCTGTGAGGGAAGACAAATAAAGATATCAGCATCACA
>TU312
CATGTTTATATATATATATATATATATATACACACACACACTCAAGTCCATTACAATACTCCAGAGGAGAAGACAGGAGGTCCATTTTCCTTTAACTGCTATGATTTTAAAAGAATTCCTTAGATAGATTTTATACAAAAGACAGCCAACATACCCCTCCCTTCACTGCAGTAAAGAAATCAAAAAAGAAAGGAAAAATCTTCCTGATCCAATGAACAGTTGGAAGCCCAGGAAATGGAAATGAAAAAGTAAACTGTAAAAAACACATCCCTCTATGTCCAGACTATCACAAATTGCAGGGAGAAAACAAAAATAACAATATAGCCCTCCCTTCCCAGTTCTCAAAAACAACAAGGAATGCTTTTAGAGCCATAAACATCTTCTACAGCAAAATTGATACGGACTGATCCTAAGCAGCGGGTACGTTGCTATAGCAACGATGAAGGTAAAGCAGGAGCTGTGGAGTGGAGGTTTGAATTTGGGGAGGAAAAGGGGCTACAGTTGAAATTTCAGTATGTACACCATGGCTGCCAGAGGGCTAAGAGTGGGGGGAGGTGCTCTGGTGAGGGGAGGCGTGGCTTAAAGAAAGCACTCCAATGGAAACCAACAAGATCTGTTTTTTTTTCTTAAGCTTTTTTCTTTTTTTAATCTTTTGAACGTTCAAAATCTCCCCTAACCTTAAGATGGAGAGGTGTAATTTTCTCCCATCATGATTCTAACTCCAAAACTACATTGCATACTTTTGTGTCCATTCCCGAGCTATTCTGTTGTACCTGTGAGGGAAGACAAATAAAGATATCAGCATCACA
>TU313
CATGTTTATATATATATATATATATATATACACACACACACACACTCAAGTCCATTACAATACTCCAGAGGAGAAGACAGGAGGTCCATTTTCCTTTAACTGCTATGATTTTAAAAGAATTCCTTAGATAGATTTTATACAAAAGACAGCCAACATACCCCTCCCTTCACTGCAGTAAAGAAATCAAAAAAGAAAGGAAAAATCTTCCTGATCCAATGAACAGTTGGAAGCCCAGGAAATGGAAATGAAAAAGTAAACTGTAAAAAACACATCCCTCTATGTCCAGACTATCACAAATTGCAGGGAGAAAACAAAAATAACAATATAGCCCTCCCTTCCCAGTTCTCAAAAACAACAAGGAATGCTTTTAGAGCCATAAACATCTTCTACAGCAAAATTGATACGGACTGATCCTAAGCAGCGGGTACGTTGCTATAGCAACGATGAAGGTAAAGCAGGAGCTGTGGAGTGGAGGTTTGAATTTGGGGAGGAAAAGGGGCTACAGTTGAAATTTCAGTATGTACACCATGGCTGCCAGAGGGCTAAGAGTGGGGGGAGGTGCTCTGGTGAGGGGAGGCGTGGCTTAAAGAAAGCACTCCAATGGAAACCAACAAGATCTGTTTTTTTTTCTTAAGCTTTTTTCTTTTTTTAATCTTTTGAACGTTCAAAATCTCCCCTAACCTTAAGATGGAGAGGTGTAATTTTCTCCCATCATGATTCTAACTCCAAAACTACATTGCATACTTTTGTGTCCATTCCCGAGCTATTCTGTTGTACCTGTGAGGGAAGACAAATAAAGATATCAGCATCACA
>TU314
CATGTTTATATATATATATACACACACACACACTCAAGTCCATTACAATACTCCAGAGGAGAAGACAGGAGGTCCATTTTCCTTTAACTGCTATGATTTTAAAAGAATTCCTTAGATAGATTTTATACAAAAGACAGCCAACATACCCCTCCCTTCACTGCAGTAAAGAAATCAAAAAAGAAAGGAAAAATCTTCCTGATCCAATGAACAGTTGGAAGCCCAGGAAATGGAAATGAAAAAGTAAACTGTAAAAAACACATCCCTCTATGTCCAGACTATCACAAATTGCAGGGAGAAAACAAAAATAACAATATAGCCCTCCCTTCCCAGTTCTCAAAAACAACAAGGAATGCTTTTAGAGCCATAAACATCTTCTACAGCAAAATTGATACGGACTGATCCTAAGCAGCGGGTACGTTGCTATAGCAACGATGAAGGTAAAGCAGGAGCTGTGGAGTGGAGGTTTGAATTTGGGGAGGAAAAGGGGCTACAGTTGAAATTTCAGTATGTACACCATGGCTGCCAGAGGGCTAAGAGTGGGGGGAGGTGCTCTGGTGAGGGGAGGCGTGGCTTAAAGAAAGCACTCCAATGGAAACCAACAAGATCTGTTTTTTTTTCTTAAGCTTTTTTCTTTTTTTAATCTTTTGAACGTTCAAAATCTCCCCTAACCTTAAGATGGAGAGGTGTAATTTTCTCCCATCATGATTCTAACTCCAAAACTACATTGCATACTTTTGTGTCCATTCCCGAGCTATTCTGTTGTACCTGTGAGGGAAGACAAATAAAGATATCAGCATCACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU306 False 829 lncRNA 0.41 2 646725 691607
TU307 False 831 lncRNA 0.56 2 646725 691607
TU312 False 809 lncRNA 0.44 2 646725 691607
TU313 False 813 lncRNA 0.38 2 646725 691607
TU314 True 801 lncRNA 0.43 2 646725 691607

Neighbor

gene id symbol gene type direction distance location
CI01000000_00588173_00605818 NA coding upstream 40529 587868 ~ 606196 (+)
CI01000000_00264365_00265448 NA coding upstream 381219 264365 ~ 265506 (+)
CI01000000_00260299_00262433 NA coding upstream 383201 260299 ~ 263524 (+)
CI01000000_00252240_00259416 SPON2B, SPON2 coding upstream 386877 252240 ~ 259848 (+)
CI01000000_00127682_00128077 NA coding upstream 518648 123554 ~ 128077 (+)
CI01000000_00753279_00782484 PPP3CA, PPP3CB coding downstream 61672 753279 ~ 782484 (+)
CI01000000_00814932_00820795 NA coding downstream 123325 814932 ~ 820875 (+)
CI01000000_00825374_00827067 NA coding downstream 133638 825245 ~ 827766 (+)
CI01000000_00948279_00956688 NA coding downstream 256672 948279 ~ 957335 (+)
CI01000000_00977418_00984766 TRAPPC11, TRAPPC11.S coding downstream 285811 977418 ~ 984766 (+)
G344 NA non-coding upstream 951 645544 ~ 645774 (+)
G339 NA non-coding upstream 6540 639895 ~ 640185 (+)
CI01000000_00639336_00658655 NA non-coding upstream 7226 639152 ~ 659048 (+)
G336 NA non-coding upstream 18852 627609 ~ 627873 (+)
G334 NA non-coding upstream 28933 617513 ~ 617792 (+)
G396 NA non-coding downstream 160152 851759 ~ 852279 (+)
G399 NA non-coding downstream 165708 857315 ~ 857515 (+)
G408 NA non-coding downstream 186871 878478 ~ 878769 (+)
G412 NA non-coding downstream 200794 892401 ~ 892633 (+)
G454 NA non-coding downstream 232879 924486 ~ 924704 (+)
G252 NA other upstream 139653 503209 ~ 507072 (+)
G435 NA other downstream 733514 1425121 ~ 1432854 (+)
G579 NA other downstream 1123846 1767917 ~ 1908808 (+)
G2774 NA other downstream 3762171 4453778 ~ 4454232 (+)
G2850 NA other downstream 4034379 4725986 ~ 4726482 (+)
G6811 NA other downstream 9513224 10204831 ~ 10321679 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007120 ube2d2 coding NC_007125.7 CM002898.2 7892021 ~ 7901635 (+)
eurasian perch (Perca fluviatilis) G103085 NA non-coding NC_053121.1 CM020918.1 3167652 ~ 3246583 (-)