G350


Basic Information

Item Value
gene id G350
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 671842 ~ 676937 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU431
CGCCAGCAGGTTTCTTTTTGAGCTCTTCGCACTTGCGGAACTTGCAGATCTGATGGCCGGTTTTCCGGTTGCGGCAGCTGCTGCACTGTTCGCAGTTAATCCTGCGCCGGCAGGGTGGACACAGGCCACAGCGCTTTCGCTTTTTCTTCCCGTTGGCGCTGATGGCCGATGAAATCTCACTCTGCGTCTGCTGGTGTTCCGATGCGCCGGTCACATGAGAAAGCGCCCCATCTGCGAGGAACACTCCTGCCGGTGTCATTATGAAGAGCCCCGGGTGATATGGAAAGCTGCCACCCACTCCACCGTTGCTGAGCAATGGGAAGTCCATCACACTGCCCAGCGAATCAGAAGCCGAGACCGCCTCTATGTCCCCTCCCACACTGACATTGGAAGGGTCGCTGACCGGAAGCAGCATTCCCGCCCGCCGCAGGAGCTCGGCGGCCTGGGCGAGATGCAAGCCGCTCGGAGAGTCCAGAAGACCGGACACTAATGCGCCCCGGTCCAGTTTGGCATACCCGACTTGTGACCTGTGCTGGCTGGCCGTAGGGTGAGCTTTGACACCCGTCGCCACCATGGAGCTCTGGGCGAGTCTGTTAGCGTTTGCGACACTGGCGACAGCAGCGGCCGAGCAGGTCGCGATGTACTGTGAGAGAGCTCGTGAGCGCTTCAGGCTTTTGCTGAGTGGAGCGCTGATGATGCCGCTACGGTTTCTCCGTTCCACCACCGGGGATGAGTCTTCATCCCCGCAGCAGCTGTCCTGTGCCTCCTCATCCTCTACGGCTCGACTTCCCTCCATGGACCCTCCGCTGGCAGACATGGGCCACAGCGTGAGGGGGAGGGAGAGGGAGATGAGGGAGCTTAGGATGAAGGGGGGATAGAGTTGCAACGTTCCTCTGAAGACCGAAGCCAAAACGAGATTGACGCGTTCACAGCTGGAGAATCAGCGGTCCACACTAGGCGAGCCTCATGAACATCTTACACATCCATTCGCTAAGGCCTGGGAATCCCAGACTGAAATATTCTCGCTGATTTCTTCAATAAGCCCCAAACACCGGCAGATAAACGCAGAACGCACTTTGTCCGAGAGCGAGCGCGTGCGCTCCTCCAGCCTCTCGCGTCTCTCTATCCCACCTCCACATCCTCGCGACCGGAGAAGAACATGCAAACACATTTCATAGATTTTTGGAGCTTCACACAAAAACCGAAGTGGACTTTCCGTCGGGGACAAAATAAATAAACCTTAAAGAGGTGTGGATGAGCGCGAGGGGCTGTCTGCGGTGATGCCGTCTGTCTCTCAGTACATATGAGAGTGGAATAATGAATGAAGTATAGTTTTGAGAGGGCTGGACACTCAGCCCATTGTTGACTCCATTCTTAATGGCTGTTGGCTGCGCTCGTGATTGATTTATTATATCCGAACTTTTGCACATTCATGCTTTCCAGGAACTTGGTGCTGATTGATATTTTAATATGCAAAGCACGGTTCCCAAGCAACCATTCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU431 True 1502 TUCP 0.42 2 671842 676937

Neighbor

gene id symbol gene type direction distance location
CI01000000_00639336_00658655 NA coding upstream 12794 639152 ~ 659048 (+)
CI01000000_00588173_00605818 NA coding upstream 65646 587868 ~ 606196 (+)
CI01000000_00264365_00265448 NA coding upstream 406336 264365 ~ 265506 (+)
CI01000000_00260299_00262433 NA coding upstream 408318 260299 ~ 263524 (+)
CI01000000_00252240_00259416 SPON2B, SPON2 coding upstream 411994 252240 ~ 259848 (+)
CI01000000_00678887_00679319 NA coding downstream 1775 678712 ~ 680447 (+)
CI01000000_00753279_00782484 PPP3CA, PPP3CB coding downstream 76342 753279 ~ 782484 (+)
CI01000000_00814932_00820795 NA coding downstream 137995 814932 ~ 820875 (+)
CI01000000_00825374_00827067 NA coding downstream 148308 825245 ~ 827766 (+)
CI01000000_00948279_00956688 NA coding downstream 271342 948279 ~ 957335 (+)
G344 NA non-coding upstream 26068 645544 ~ 645774 (+)
G339 NA non-coding upstream 31657 639895 ~ 640185 (+)
G336 NA non-coding upstream 43969 627609 ~ 627873 (+)
G334 NA non-coding upstream 54050 617513 ~ 617792 (+)
G396 NA non-coding downstream 174822 851759 ~ 852279 (+)
G399 NA non-coding downstream 180378 857315 ~ 857515 (+)
G408 NA non-coding downstream 201541 878478 ~ 878769 (+)
G412 NA non-coding downstream 215464 892401 ~ 892633 (+)
G454 NA non-coding downstream 247549 924486 ~ 924704 (+)
G252 NA other upstream 164770 503209 ~ 507072 (+)
G435 NA other downstream 748184 1425121 ~ 1432854 (+)
G579 NA other downstream 1138516 1767917 ~ 1908808 (+)
G2774 NA other downstream 3776841 4453778 ~ 4454232 (+)
G2850 NA other downstream 4049049 4725986 ~ 4726482 (+)
G6811 NA other downstream 9527894 10204831 ~ 10321679 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location