arf1 (arf1,LOC103038497,LOC107671731,LOC107727518)


Basic Information

Item Value
gene id arf1
gene name arf1,LOC103038497,LOC107671731,LOC107727518
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3499580 ~ 3504255 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217502.1
CGGCTTTGGTTAAAGTTTTTGATGCGTTCCAAAACGGTAACAAACGATAACAACGTGCGGTATGCTATCCTCGGCGGGGAAAAAAGATTAGAATAGGAATGTCGGAGTTAAACGGATTGAAATCGGTTCAGATTGAAGTGAGAAAGGCGTCTGTCAAACATGGGCAACATATTCGCAAACCTCTTTAAAGTCTTCggtaagaaagagatgaggATCCTCATGGTGGGCCTTGACGCCGCCGGAAAGACGACGATTCTGTACAAGCTGAAGCTGGGGGAAATTGTTACCACCATCCCAACCATCGGTTTTAATGTTGAAACCGTGGAGTACAAGAATATAAGTTTCACAGTTTGGGACGTCGGCGGTCAAGATAAGATTCGACCGTTGTGGCGCCATTATTTCCAGAACACACAAGGTCTGATCTTTGTGGTGGACAGCAACGACCGAGAGCGAGTGAACGAGGCACGAGAGGAGCTGATGAGGATGCTGGCCGAGGATGAGCTCAGGGAAGCAGTTCTTCTCGTGTTTGCCAACAAGCAGGACCTACCGAACGCCATGAACGCTGCAGAAATCACGGACAAGCTGGGGCTGCATTCGCTCAGGCACAGGAACTGGTACATTCAGGCCACGTGCGCCACGAGCGGCGACGGCCTCTACGAAGGACTCGACTGGTTGTCCAATCAACTCAAAAACCAGAAATAACCACCTCGCTGTACTGATGATCTTCCTTAGCTTGGTATTCTCAACacttgctttactttttttgtttttaatcaacgGTGCTGGAAGCTGCGCTCATTTCAAACCCCATTAACACAGAAGAACAGTTCCCTGCGGTCGAAGCGTCGCTCTCTCGTTTAATgtaaataggtttttttttttccctcgttGTTGTGAGGCAGCTTTTCGAGCACCATTATGCAAAATAGATTTAGTCTTTCGTCGTTTATTCCTGACTTTTtcgtagtttttgttttttctggcCACGTCTGTAAACTCGGCCGGGTCTCATTTGAATCTCGcacatgtattattttattgtgcttATAAGACTCTTTCTTAGACGTACTGTAAACAAAGCTGTCGTGTTTGTCTTGAGCGGAGGACAGGAAATCAAACATTACAGACACTACCTGCACACGCAACGGTTCGAGTTTgaggaaaagaaaccaaaaaaccATTACACTGTCTTCTCGGCAAAGGCTGAAGTGACCTCTAGCTTTACCGTCATGATGCTTTAGGAGCCGTGGAGTTGAGAAGTCAGCTACACAACCGTGTGTCTGTTGAGATTCCCAGTACACAGCAGATGATTTGTGGGAGAAATGTTGGCTCAGGTTAATCAAGGTTTGTAGTAGAGTGAAGTAATACTTTCAGACACGTTTTTtttggggttgtttttttttatagaactgGAGGTTGTTTAGTTAAAACAATGTGACGAGTCGTTTCGCAAAAATAGGTTTCATTTtctatatgcaaaaatattgtttattttatttatgagtgTTGAAATGTGACCCGAACACTTTTTACCCAGAAAGAGAAACTGAAAGATTGGTTTTATGCGCCTAGCATTAAATTTCGTGTTTTGACACTCTTGTGTTAAAGTGTTACTTTCTGTTTCTTATTTTGGTCTCGATTCTAACCACCCTTTGAAACGCTTTCATCTAACCACACGCTCTAAATCGatatctaaaaaagaaaaatgcatttttattaatttaggaCATAACCTGAAAGGCATGTTAATATCAAGCGTTTGAGCTTTCtgttgtgtgtttggatgtcatTTTTCCCCCAGACTAGCCGTGGTGCCTTTatgacagacagagactcctGTTTCAGATTAAGCTTCGTGTTCAATGTTAAACAATGTTAGGACTAATGGGTTTTAAAGTTACtttatttctgtctctctttttcttttcccattTAACCTATAATTTGATAGACACTGATTACTTTGGGTCAAAATTATGTGAACCTCTTAGCAAAATATGTATAGTGACATGGTtaacctttgttttttttttttaattattattattttgacagaAATGCACTGTAATTAAAGATACTTGTATAACTGGA
>XM_043217511.1
CACAGAGTTCTCTGTTATTTATCACCTTCTCGGCGGAAGTGATGCGCGACGCACTGACGTGGCCGGAAACCCGCCATCTTGAGGGAGGAAACGCCTTGAAGTTGAGGAGGAAACTTGAACTTGAAGTGAGAAAGGCGTCTGTCAAACATGGGCAACATATTCGCAAACCTCTTTAAAGTCTTCggtaagaaagagatgaggATCCTCATGGTGGGCCTTGACGCCGCCGGAAAGACGACGATTCTGTACAAGCTGAAGCTGGGGGAAATTGTTACCACCATCCCAACCATCGGTTTTAATGTTGAAACCGTGGAGTACAAGAATATAAGTTTCACAGTTTGGGACGTCGGCGGTCAAGATAAGATTCGACCGTTGTGGCGCCATTATTTCCAGAACACACAAGGTCTGATCTTTGTGGTGGACAGCAACGACCGAGAGCGAGTGAACGAGGCACGAGAGGAGCTGATGAGGATGCTGGCCGAGGATGAGCTCAGGGAAGCAGTTCTTCTCGTGTTTGCCAACAAGCAGGACCTACCGAACGCCATGAACGCTGCAGAAATCACGGACAAGCTGGGGCTGCATTCGCTCAGGCACAGGAACTGGTACATTCAGGCCACGTGCGCCACGAGCGGCGACGGCCTCTACGAAGGACTCGACTGGTTGTCCAATCAACTCAAAAACCAGAAATAACCACCTCGCTGTACTGATGATCTTCCTTAGCTTGGTATTCTCAACacttgctttactttttttgtttttaatcaacgGTGCTGGAAGCTGCGCTCATTTCAAACCCCATTAACACAGAAGAACAGTTCCCTGCGGTCGAAGCGTCGCTCTCTCGTTTAATgtaaataggtttttttttttccctcgttGTTGTGAGGCAGCTTTTCGAGCACCATTATGCAAAATAGATTTAGTCTTTCGTCGTTTATTCCTGACTTTTtcgtagtttttgttttttctggcCACGTCTGTAAACTCGGCCGGGTCTCATTTGAATCTCGcacatgtattattttattgtgcttATAAGACTCTTTCTTAGACGTACTGTAAACAAAGCTGTCGTGTTTGTCTTGAGCGGAGGACAGGAAATCAAACATTACAGACACTACCTGCACACGCAACGGTTCGAGTTTgaggaaaagaaaccaaaaaaccATTACACTGTCTTCTCGGCAAAGGCTGAAGTGACCTCTAGCTTTACCGTCATGATGCTTTAGGAGCCGTGGAGTTGAGAAGTCAGCTACACAACCGTGTGTCTGTTGAGATTCCCAGTACACAGCAGATGATTTGTGGGAGAAATGTTGGCTCAGGTTAATCAAGGTTTGTAGTAGAGTGAAGTAATACTTTCAGACACGTTTTTtttggggttgtttttttttatagaactgGAGGTTGTTTAGTTAAAACAATGTGACGAGTCGTTTCGCAAAAATAGGTTTCATTTtctatatgcaaaaatattgtttattttatttatgagtgTTGAAATGTGACCCGAACACTTTTTACCCAGAAAGAGAAACTGAAAGATTGGTTTTATGCGCCTAGCATTAAATTTCGTGTTTTGACACTCTTGTGTTAAAGTGTTACTTTCTGTTTCTTATTTTGGTCTCGATTCTAACCACCCTTTGAAACGCTTTCATCTAACCACACGCTCTAAATCGatatctaaaaaagaaaaatgcatttttattaatttaggaCATAACCTGAAAGGCATGTTAATATCAAGCGTTTGAGCTTTCtgttgtgtgtttggatgtcatTTTTCCCCCAGACTAGCCGTGGTGCCTTTatgacagacagagactcctGTTTCAGATTAAGCTTCGTGTTCAATGTTAAACAATGTTAGGACTAATGGGTTTTAAAGTTACtttatttctgtctctctttttcttttcccattTAACCTATAATTTGATAGACACTGATTACTTTGGGTCAAAATTATGTGAACCTCTTAGCAAAATATGTATAGTGACATGGTtaacctttgttttttttttttaattattattattttgacagaAATGCACTGTAATTAAAGATACTTGTATAACTGGA

Function

symbol description
arf1 Predicted to enable GTP binding activity. Acts upstream of or within semicircular canal development. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; head; pharyngeal arch 3-7; and semicircular canal. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARF1 (ADP ribosylation factor 1).

NR:

description
ADP-ribosylation factor 1 isoform X3

GO:

id name namespace
GO:0060872 semicircular canal development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07937 ARF1_2; ADP-ribosylation factor 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217502.1 True 2091 mRNA 0.41 5 3499735 3504255
XM_043217511.1 False 2079 mRNA 0.42 5 3499580 3504255

Neighbor

gene id symbol gene type direction distance location
wnt3a wnt3a,LOC107727506,LOC107558010,LOC107661901 coding upstream 18401 3460727 ~ 3481179 (+)
snap47 snap47,LOC107661893,LOC107727535,LOC107671760,LOC107711707,LOC107558015 coding upstream 147996 3343658 ~ 3351584 (+)
iba57 iba57,LOC107727502,LOC107593877 coding upstream 159606 3336399 ~ 3339974 (+)
gjc2 LOC107661908,LOC107727543,LOC107711690,LOC107671673,LOC107558016,LOC107593878 coding upstream 166575 3313001 ~ 3333005 (+)
LOC122324044 cyp8b1,cyp8b3,LOC107727542,LOC107661909,LOC107558014,LOC107593879,LOC107711691,LOC107671665 coding upstream 186729 3310936 ~ 3312851 (+)
guk1a LOC107727516,LOC107711703,LOC107593754,LOC107661890,LOC107574785 coding downstream 8634 3512889 ~ 3522776 (+)
zyg11l LOC107671664,LOC107574786,LOC107711672 coding downstream 45980 3550235 ~ 3562870 (+)
serbp1b serbp1b,LOC107660393,LOC107567863,LOC107671652 coding downstream 71401 3575656 ~ 3584040 (+)
LOC122362766 LOC107660396,LOC107727523,LOC402879,LOC107593822 coding downstream 81086 3585341 ~ 3590132 (+)
usp14 usp14,LOC107660400,LOC107711695,LOC107671702,LOC107727520,LOC102778130 coding downstream 153760 3658015 ~ 3664392 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding upstream 378527 3116848 ~ 3121053 (+)
G8816 NA non-coding upstream 586793 2912291 ~ 2912787 (+)
G8794 NA non-coding upstream 626831 2819072 ~ 2872749 (+)
G8764 NA non-coding upstream 886476 2612522 ~ 2613104 (+)
G8724 NA non-coding upstream 890061 2511622 ~ 2609519 (+)
G9130 ipp non-coding downstream 19015 3523270 ~ 3524571 (+)
G9141 NA non-coding downstream 59453 3563708 ~ 3564239 (+)
G9142 LOC107579015,LOC107671680,LOC107711685 non-coding downstream 68182 3572437 ~ 3573075 (+)
G9232 NA non-coding downstream 276285 3780540 ~ 3780778 (+)
G9234 NA non-coding downstream 280084 3784339 ~ 3784667 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 334757 3123124 ~ 3164823 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other upstream 759673 2729636 ~ 2739907 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other upstream 809953 2675370 ~ 2689627 (+)
G8768 zbtb41,LOC107671738,LOC107559347,LOC107709336,LOC107681803 other upstream 862994 2635241 ~ 2636586 (+)
LOC122329004 NA other upstream 881131 2618316 ~ 2618449 (+)
G9154 rock1,LOC107671690 other downstream 111227 3615482 ~ 3617043 (+)
G9173 NA other downstream 172170 3676425 ~ 3678934 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other downstream 251916 3756171 ~ 3790339 (+)
G9361 NA other downstream 717984 4222239 ~ 4223112 (+)
G9416 wrnip1 other downstream 1059642 4563897 ~ 4570094 (+)

Expression


Co-expression Network