LOC122323799 (LOC107681838,LOC107709342,LOC107593839,LOC108430687,LOC103043726,LOC105899208)


Basic Information

Item Value
gene id LOC122323799
gene name LOC107681838,LOC107709342,LOC107593839,LOC108430687,LOC103043726,LOC105899208
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2695421 ~ 2701972 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217897.1
GCAGGGGAGTAAGCCCCGCCCCCAGCAGTCATTGGTCAATGAGCGGTGTTACAAAACGGACAGCTGCACGTGAGAAAAATGTGCAGAATTATCATAAGTGCCTTCGATTTCATGTGCTCGGATTCGGAAGCGCATGCTACTTATTAGGTTGCGCAACATCAGAGGAAATAGAAGAGCGCTGCTCCTCCGTGCTCCACCAGCGACCCAGACGCTCCCACGTTATTTCAGCATGTCCGCAAACAAGCGCAAGCCGAAGCGCCAGAAGGAGGCAGCGGACGGCCCCGCGGGGAAAGAGCCGAGGCTGACGGGAGCGAGCGCGAGAGAGAGCGGCTGGCTGCCGAAGGAAGTGACGGAGCTCCGCAGAGCGGCGCGAGGATGCGACTTCAATAAAAAGCGCCTCCGCTGTCTGTCAGACGCACAGAAAATCAAACAGGGCTCCGGTGGGGTCCTCTACTGGATGTCCCGCGACCAAAGAGTCCAAGATAACTGGGCATTGATCTACGCTCAGCAGCTGGCTCTGGCTGAGAAGCTTCCTCTGCACGTCTGCTTCTGCTTGGTGCCTCGGTATCTGGATGCGGCCTACAGACAGTACGCTTTTATGTTGAAAGGACTGCGAGAAGTGGAGAAGGAATGCAAAAGCCTGGATATTCAGTTCCATCTGCTGCCAGGAGAACCTGGACAGAAGCTGCCAAGCTTTGTTAAAAACTGGAAGTTCGGAGCCGTCGTCGCGGACTTCAGCCCTCTCAGGATCCCTCTCCAGTGGATTGAGACCGTAAAGAAACACCTTCCGCCCGATGTCCCTTTCATTCAGGTCGATGCACATAACGTTGTGCCCTGCTGGGAAGCGTCTGAGAAGCTGGAATACGGAGCCAGAACGATACGAGGAAAAATCACCAAACTTCTGCCAGAATTCCTCACAGAGATTCCTCCTGTGGACGCTCATCCGTACTCCGCTGCTCGTACGGCAAAGGTTGTGGACTGGGAGGAGGTGCTGTCGTCTCTGGAGGTGGAGCGCAGTGTTGGAGAGGTAGACTGGGCTCAGCCTGGCTCCTCCGGAGGCATGGCCATGCTGGAGTCCTTCATTGATCAACGCTTGCGTCTCTTTGCCACTCACAGAAACAATCCCAACTGTGACGCCCTCAGCCATCTCTCCCCCTGGATCCACACCGGTCAGTTGTCTGCTCAGCGCGTGGCGAAGCAGGTCAAGCGAGAGAAGAACGCCAGCGAGTCCGTGGCGTCTTTCGTTGAGGAGCTGGTGGTGCGCCGGGAGCTCGCCGACAACTTCTGCTTCTACAACCCCGACTACGACAGCGTCTCGGGAGCCTATGATTGGGCGAAGAAGACCTTGCAGGATCACGCCAAGGACCCCAGACAGTACCTTTACACAAGAGAGCAGCTGGAGGACGCTAAGACCCACGACCAGCTGTGGAACGCTGCACAGCGTCAGCTGGTGTTAGAAGGGAAGATGCACGGGTTTCTGCGCATGTACTGGGCAAAGAAGATCCTGGAATGGACCGCGTCTCCTGAAGAGGCTCTCTCTATTGCTATATATCTGAATGATCATTTTGCTTTGGACGGCTGTGATCCCAACGGATACGTCGGCTGCATGTGGTCCATCTGTGGCATCCACGACCAGGGCTGGGCGGAGAGGCCCGTCTTCGGCAAAATCCGTTATATGAATTATGCTGGCTGCAAGCGGAAGTTCGATGTGGCACAGTTCGAGAGGAAGTACGCTGCTCTAAAGGAGACCTCCAAAAAAGATACCAAGAAACCTGTCTAGtttcaatatttctattttcacTTCTCGTTGTTTGTACTTGTTTAAGGGGGATGTTTTTCTGGCAGACCTTTTTCTGTAGTAAGGGAGGTTTATTAATAAGGTGCTATATttgttatgttgttttgttcGTATAAAGGCTACAAAAAAGCTACAtaaaaggcaattttttttatataaatgttcatAGGTTTGGTCTGATGTTACGAAGTTCTCGACGGTCATGCATTGTAGACTTCAGAAATGCAATGTATACTAGTTGTACTGGTGTTGTTTTTTCACTGCACAACGGTGGAagaatcttttttaaaataaaattttaatacaca

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: deoxyribodipyrimidine photo-lyase-like

GO:

id name namespace
GO:0018298 protein-chromophore linkage biological_process
GO:0006281 DNA repair biological_process
GO:0003904 deoxyribodipyrimidine photo-lyase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K01669 phrB; deoxyribodipyrimidine photo-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217897.1 True 2106 mRNA 0.52 10 2695421 2701972

Neighbor

gene id symbol gene type direction distance location
ahsg2 LOC107727545,LOC107681805,LOC107577584,LOC107559377 coding upstream 34392 2658403 ~ 2661029 (+)
LOC122328513 LOC107727546,LOC107671763,LOC107559376,LOC107709337 coding upstream 37636 2644995 ~ 2657785 (+)
dvl3a dvl3a,LOC107681796,LOC107671749,LOC107559372,LOC108430757 coding upstream 62865 2620842 ~ 2632556 (+)
ap2m1a ap2m1a,ap2m1b,ap2m1,LOC107671693,LOC107593770,LOC107709357,LOC107602122 coding upstream 88565 2598768 ~ 2606856 (+)
abi1b abi1b,LOC107671751,LOC107559371,LOC107681778 coding upstream 114156 2563177 ~ 2581265 (+)
vps4b vps4b,LOC107710065,LOC107681797,LOC107727524,LOC107671729 coding downstream 15601 2717573 ~ 2729493 (+)
bcl2b bcl2b,LOC107727540,LOC107593762,LOC107671740,LOC107711715,LOC107559382 coding downstream 40743 2742715 ~ 2780678 (+)
dpp6b dpp6b,LOC107658692,LOC107711712,LOC107671710,LOC107727490,LOC107558008 coding downstream 253737 2955709 ~ 3064602 (+)
kcnt2 LOC107661911,LOC107727504,LOC107593757 coding downstream 468479 3170451 ~ 3190588 (+)
LOC122355741 LOC107661905,LOC107711709,LOC107671722,LOC107727480,LOC107558019 coding downstream 492040 3194012 ~ 3197447 (+)
G8764 NA non-coding upstream 82317 2612522 ~ 2613104 (+)
G8724 NA non-coding upstream 85902 2511622 ~ 2609519 (+)
G8737 NA non-coding upstream 250221 2443588 ~ 2445200 (+)
G8716 NA non-coding upstream 374234 2288286 ~ 2321187 (+)
G8794 NA non-coding downstream 117100 2819072 ~ 2872749 (+)
G8816 NA non-coding downstream 210319 2912291 ~ 2912787 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding downstream 414876 3116848 ~ 3121053 (+)
G9130 ipp non-coding downstream 821298 3523270 ~ 3524571 (+)
G9141 NA non-coding downstream 861736 3563708 ~ 3564239 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other upstream 5794 2675370 ~ 2689627 (+)
LOC122355548 NA other upstream 25478 2617207 ~ 2669943 (+)
G8768 zbtb41,LOC107671738,LOC107559347,LOC107709336,LOC107681803 other upstream 58835 2635241 ~ 2636586 (+)
LOC122329004 NA other upstream 76972 2618316 ~ 2618449 (+)
LOC122328998 NA other upstream 77287 2618002 ~ 2618134 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other downstream 27664 2729636 ~ 2739907 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other downstream 421152 3123124 ~ 3164823 (+)
G9154 rock1,LOC107671690 other downstream 913510 3615482 ~ 3617043 (+)
G9173 NA other downstream 974453 3676425 ~ 3678934 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other downstream 1054199 3756171 ~ 3790339 (+)

Expression


Co-expression Network