LOC122323886 (LOC107671547,LOC107565518)


Basic Information

Item Value
gene id LOC122323886
gene name LOC107671547,LOC107565518
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4415924 ~ 4422167 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217998.1
GTAAAATCTGACCGGGAAGAAGTCATAAAACAGCAGGACTGGCGAGCGGGACAGTTTGATCACATGAAAATATGGATGATCTGATCCAGGATCAGTCCAGATGTGGATCTTGTGAGCAGGTACTAAGTGATTCAGTCTCTATCACATGTGGACACAGTTTCTGCAGTCAATGCATCAGTTTCTACTGGGATCAGTCAAGACTACCAGAGGAGTTTGACTGTCCTCTATGCATAAAGAGATCTAGACCACATCTACAGATGCACAGAGTCTGTTACACACCAGCAGGCCTGCAGGTGGAGTCTAGAGACCTGAAAAGAGTCAAAGAAAAGCATAAAACCAGCATGAAGGACAGGTATGAGAGTTTATTTGAGGGAATCAAACACAAAGAGAATGAAACCCTCCTCAACAGGATCTACACACAGCTTTACATCATAGAAGGAGAGAGTGATGGagtgaatgaagaacatgaggttttacagatggagaaaacTGCCAGAACCCAACCTGCAGAAGACACTTCCATCTACTGCAATGACATCTTTAAAGCCTCACCTGAACCAAAATGTGAGGAGAAAGACAAACTCAGGGTtgttcttactaaaggcattgctggaattggaaaaaccatctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggaagtagatttcatgtttttgcTTCCTTTTCGAGAGTTGAACTTGATTCAAGATCATAAGTATAGTCTTCAGAAACTTCTGATGGACTTTCACCCTGAACTTCAAGATCTGGACTCAAAGATTTATGAGGAATGCAAAattgtgttcatctttgatggtctggatgaaagcagGATTCCACTGATGTTTACAGACACTCATAAAGTTTGTGACGTTACAGAGACTTCATCAGTGGGTGTGTTGATGTCAAACCTCATGAAAGGAGAgctgcttccctctgctctcatctggatcacctctagaccagcagcagccaatcagatcccctCTGAGTACATCAACCGTCTGACAGAAATTCAGGGATTCAATGAGTCTCAGAAGGAAGAATATTTTAGGAAGAGAATCAGTGACCAACATCAAGCCAATAAGATCATCTCGCACATCAGAAGAGCAAGAAGTctccacatcatgtgccacatccccGTCTTTTGCTGGATCTCATCCAGTGTGCTTCAGAAACTCCTGGAAAAAGATCAGAGTGCAGAAATTCCTCAAACtttgactgaaatgtacatccacTTCCTGCTGATTCAGATCAGCACAAGGAACCAGAAGTATGAAGAGAGAGATCCAGAGAAACTCATGGAATCCAACAAAGAAGTGATTGTGAAACTTGCTCAAGTGGCTTTCAGACAGCTGATGAAGGGCAATGTGATGTTCTATGAGGAGGACCTGAGGGAGAGTGGCATAGAAGTAATCGATGCCTCAGTGAATTCTGGGATTTGCACTGAGATCTTTAAGGAGGAATCTGTGATTCATCAGAGGAAAGTCTACACCTTCATTCATCTGAGCATTCAGGAGTTTCTAGCTGCCTTTCATGTGTTTTACTGCTATCTATGCAGTACAACAGAGACACTTATGGTTTTTGATTCAATGCATAATCTGCATCAAGGAGCAATAGATAAAGCCATTGGTAGTGAGAATGGACAGCTGGATCTGTTCCTTCGGTTCCTTCTGGGCATCTCAATGGAGTCCAATCAGAAACTCTTGCAGTAtttactgacacacacagagaacagctCAGAGAGCATCAGGAGAACTTCACAGTACATTAAAGAGAAGATCAAAGATGGAAGTGAACTCTCCGCTGAAAGGTCCATCAATCTGTTCCTCTGCCTGCTGGAAGTAAAAGATCAGACTCTGTCCAGAGAAATTCAGGAGTTTGTGAAATCAGACTCAGAGAAGAAGCTTTCTCCTGCTCAATGCTCAACAATTGCCTACATGCTTCAGATGTCAGAGAAGGCGCTGGATGAGTTTTATCTGAAGAGATACAACACATCAGATGAGGGTAGAAGAAGACTATTACCTGCTGTGATAAACTGCACAAAAGCTTTACTCTCTGGCTGTAATCTTACTGATCGGTGCTGTGAGAATTTATCATCAGCtctacaatcctcaaactctgtcCTAAAAGAGTTGGACCTGACTAACAATGATCTGTGGGATTCTGGTGTGAAGCTACTCTGTGATGGACTGAAGAATCCAAACTGTCAGTTAGAAACATTAAGgttGTCTGGCTGCATGGTGACAGAGCAAGGCTGTGGTTTTGTGTgttcagctctgagttcaaacccTTCACACCTAAGAGAGCTTGATCTGAGCTATAATCACCCAGGACCATCAGGAGTCCAGCGACTTAGTGACAAACTGAACGATCCAAACTGCTCACTGGAGAAACTCAAtgTGGATCATGGAGGAGATTTTAGGATCCGAGCAGGGCTGCAAAAATATGCCTGTAGCCTCACACTAGATCCAAACACAGTAAACACCCATTTGATTCTGTCTGAGGGATACAGAAAAGCGACATACGTTGAAGAGCTGCAGTCATATCCTGATCATTCAGAGAGATTTGAGCACCATCCTCAGGTTCTGTGTGGACAGGGTCTGAccggacgctgttactgggaagCTGAATGGAACGGGAGAGGGACAGAGATATCGATGACATACAAAGATATCAGCAGGAAAGGAGGAAGTGACTGTAGATTTGGATTCAATCAAAAGTCTTGGAATCTGAGCATTTTTTATAACAGACTCACTGTCTGTCACAATAATGACAGCACTGAGATATCAGCCCCTTCATCTTCTAACCGAGTAGGTGTGTATCTGGACTCGTCTGCTGGTACTCTGTCTTTCTACGGTGtctccgacacacacacactcacacacatacacacattcaacacCACGTTCACTGAACCCGTCTATGCTGGGTTTGGGGTTTATTATGGTTCCCCAGTTTCTCTGTGCTAGACTGAACAACAGACTGCAATTATGACTCGGACGGACTTAGATTTTGCACAGAACataaaattatgataaaaagaTATCCTTAGACATCTCTCACTGAAACTCTGTCAATTAATGACTgcattgtaaaaacaaatggcTGATTTTAATGGTAAAGACTATAAAaattctacagtaaaaacctgttaaatggttaatggtaaattcctgtaaaatctACAGGGAAAACCCATAAAgagacattcccagaattccctgctttgcatttaaaatgtttaaatgttttttctttctcactaTGTTTCTTAGTTTTTCTCATCAGTTATGCTTATTAGCgttgtatgttacatgtaatgttgttaaattaaagttattgCATATTTCTGTTTAATGGTGGTGTTTACTGTTTGTGTGACGGAGGAAAGC

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217998.1 True 3413 mRNA 0.42 6 4415924 4422167

Neighbor

gene id symbol gene type direction distance location
LOC122323876 LOC107565530 coding upstream 124 4403781 ~ 4415800 (+)
LOC122360677 znf521,LOC107562851,LOC107705137,LOC107708595,LOC107573008 coding upstream 38927 4305601 ~ 4376997 (+)
ss18 ss18,LOC107671692,LOC107671559 coding upstream 120891 4288018 ~ 4295033 (+)
rpe65a rpe65a,rpe65,LOC107705134,LOC107708597,LOC107693590,LOC108436856 coding upstream 166923 4243108 ~ 4249001 (+)
gpaa1 gpaa1,LOC107671733,LOC107693589 coding upstream 174848 4232659 ~ 4241076 (+)
LOC122323895 LOC107565531,LOC107708594,LOC107671745,LOC100331149,LOC108436854 coding downstream 1210 4423377 ~ 4432719 (+)
si:ch211-241e1.3 LOC107671555,LOC107705144,LOC107708592,LOC107565521,LOC107671659 coding downstream 117885 4540052 ~ 4549603 (+)
LOC122328338 foxq1,LOC107685281,LOC107745888,LOC107563088,LOC107671726,LOC107724052 coding downstream 462443 4884610 ~ 4885965 (+)
foxf2a LOC107671725,LOC107745889,LOC107563086,LOC107685282,LOC107724048 coding downstream 465956 4888123 ~ 4891761 (+)
pex5lb pex5lb,LOC107564246,LOC107653517,LOC107660316,LOC107550448,LOC107724753 coding downstream 1308438 5730605 ~ 5763859 (+)
G9382 LOC107671550,LOC107705116,LOC107671683,LOC107562856,LOC107708586,LOC107565517 non-coding upstream 28480 4386927 ~ 4387444 (+)
G9379 NA non-coding upstream 36092 4379576 ~ 4379832 (+)
G9356 LOC107600323,LOC107671560,LOC107705133 non-coding upstream 149908 4260768 ~ 4266016 (+)
G9362 NA non-coding upstream 191813 4223591 ~ 4224111 (+)
G9305 NA non-coding upstream 396209 4019339 ~ 4019715 (+)
G9391 rpb4,polr2d,LOC106612892 non-coding downstream 36926 4459093 ~ 4462842 (+)
G9397 NA non-coding downstream 56142 4478309 ~ 4520645 (+)
G9398 NA non-coding downstream 57310 4479477 ~ 4482624 (+)
G9516 NA non-coding downstream 202595 4624762 ~ 4627170 (+)
G9536 NA non-coding downstream 231789 4653956 ~ 4654170 (+)
G9361 NA other upstream 192812 4222239 ~ 4223112 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other upstream 625585 3756171 ~ 3790339 (+)
G9173 NA other upstream 736990 3676425 ~ 3678934 (+)
G9154 rock1,LOC107671690 other upstream 798881 3615482 ~ 3617043 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 1251101 3123124 ~ 3164823 (+)
G9416 wrnip1 other downstream 141730 4563897 ~ 4570094 (+)
mylk4a mylk4,LOC107671735,LOC107562868,LOC107708588 other downstream 150778 4572945 ~ 4589827 (+)
LOC122361055 LOC107565287,LOC107667819 other downstream 476205 4898372 ~ 4899380 (+)
LOC122355892 foxc1,foxc1a,LOC107745890,LOC107576425,LOC107726170,LOC107563085,LOC105019236 other downstream 486962 4909129 ~ 4911176 (+)
G9630 LOC107705308,LOC107564255,LOC107728403 other downstream 1186160 5608327 ~ 5609276 (+)

Expression


Co-expression Network