pls1 (pls1,LOC107722705,LOC107656864,LOC107565818,LOC107709028,LOC107681752,LOC108437523)


Basic Information

Item Value
gene id pls1
gene name pls1,LOC107722705,LOC107656864,LOC107565818,LOC107709028,LOC107681752,LOC108437523
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1248218 ~ 1263078 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218071.1
tttctgttcttcTCTCGTGGCGCTGTCCTCACCAGTactacattcattcattcagcatGAGCAGTGTgtgattttaatgtgatttcCAGATACAtctgagtattttttttttagctgtttagATCTGCATTAGAAGAAAAACATGGCACTAATCACAAGAGGACTCCACAGGGTATTCATCTGGACCAAGAGAccaaataacacatttacagGTCTTTTGCATGGTGAGAACTGCTGCAGGGAGAAAAGCATGGAGAGCAAAGTGACGCAGATCTCCCGAGAAGATCTGGAGGACCTGAGAGAGGCTTTCAACAAAATCGATATCGATAACAGTGGCTATGTGAGCGATTTTGAACTTCAAGAGCTCTTTCGAGAGGCCAGCTTTCACATTCCGGGATACAAGGTACGAGAGATTGTGGAAAAGTTCATGGCAGGTGACACCAACAAAGACGAGAAGATCAGTTTTGAAGAGTTCGTTGCGATATACCAAGAAATGAGAAGCAAAGAGGTGAGAGAAACTTTCCGCAAGTGCATCTCCAGGAGGGATGGGATTCGTTCGTTTGGAGGAACATCAAAGATCTCAAGTGAAGGAACTCAGCATTCTTACTCAGACGAAGAAAAAGTGGCCTTCGTGAACTGGGTCAATAAGGCTTTGGCGGAAGATCCCGACTGCAAGCATCTGATCCCGATGGACCCAGAGACTGACAGCTTATTCAAATCTGTGAAAGACGGAATATTGCTGTGCAAAATGATCAACCTCTCGCAGCCGGACACCATTGATGAGCGGGTCATCAACACGAAGAAATGCACTCCATTTACAATGACGGAGAATTTGGTGCTGGCTCTAAACTCTGCATCGGCTATCGGATGCACGGTGGTCAACATCGATGCTCAGGACATGAAAGCAGGAACCCCTCACCTCGTGCTTGGCCTCCTCTGGCAAATCATAAAAATCGGCCTCTTCGCTGACATTGAAATTTCACGCAACGAAGCTCTAATTGCTTTGCTGGATGAGTCAGAGGAGCTCGACCACCTGATGTCTATGTCCCCCGAGGACCTTTTGCTGCGATGGGTCAACTATCACCTCAAAGCCGCCGGCTGGGAACCAATCAGAAATTTCAGTGATGATATTAAGGACTCCAGGGCATATTTCCACCTGCTTAATCAGATCTCGCCTAAAGGAGACGGGGATGACGAGATGAGGATCGACATTGACATGTCTGGTTTCAATGAGAGTGATGATGAAAGGCGAGCAGAGCTGATGCTGAAGCAGGCAGATCGTCTGGACTGCAGACAGTTTGTCACTCCCAAAGACGTGGTGGCAGGAAACCAGAAGCTCAACATGGCCTTTGTAGCCAATCTTTTCAACATGTACCCGGCCTTGAACAGACCCGCCAGTAATGGCATTGATTATGCAATTGAGGGGGAAACGAGAGAGGACAGGACGTTCAGAAACTGGATGAATTCTCTGGGAGTTACTCCACATGTCAACCACCTGTACAGCGATCTGCACGACGGTCTCATCATTCTTCAGCTGTATGAGAGAACCCAGGTTCATGTTGACTGGACTAGAGTCAATAAACCTCCCTATCCAGTACTGGGATCCAACATGAAGAAGcTTGAGAATTGTAATTATGCGGTCGCACTGGGCAAAAAGGAAGCAAAGTTTTCCTTAGTAGGAATCGGTGGTGAGAATATCAATGAAGGAAGCTCCATGCACACTCTTGCATTGGTCTGGCAGCTAATGAGAAgGTACACACTAAAGGTTCTGTCTGACATCGGTGACGGGGAAAAAGTCAGTGACCAAGTAATTATCGACTGGGTTAACAACACCTTGAAACAAGGCCAGAAAGACTCGCATATTAACAGCTTCAAGGACAAATCAATCAGTACTAGCCTTCCGGTGATTGATCTGATCGACACCATCATGCCCAAAGCCATCAAATACGAGATGGTGAAGACCGGCGATCTGACGGCAGAGGACAAGCTAAACAATGCAAAATATGCGATCTCAGTGGCGCGTAAAATCGGAGTCAGGGTGTACGCCCTGCCCGATGACCTTGTGGAGGTCAACCCCAAGATGGTGATGACGGTGTTTGCATGCCTTATGGGGAGAAGCTTGAAGAAAGTAGATGGCTGACCTTTCTTGAAGGACGCCGTCAGAAAGCACAACCCTCACTTTGCACTTTTTCTTCTCTCGACTTCCCTTCTGCCTCATTCACCAATACTTTCAcgcattagtttttttttttaaacatttctttacgGATACTtcatctttgattaatagacCTCCTGTTAATTACGTTTCACTAATCGTTTCATTTCTCCCAGCTCATGCGCTACAAGTAGATTATTAAAAGTTGACGTTattttcttaaaggaacagtttacccaaaaatgaaagcgtGCGTTGCGTcactgcggtgaatgggtgccgtcagaatgagagtcctgACAGCTAATCCAGgcgaaaagctgcatgtttctaagaaac
>XM_043218080.1
AGGTTTTACTTTGGTTTCTTTACGTCGCGCCATGTGCTGTATTGTTTAGGGTCATGCTTAAAACATGAAGGTCTGCTGTCAAACATCTGTCAGCTGAGGTTTCTTGTTCGGTCTCCAGTGAGCTCAACGGTGCCGAAGGGACGCTGAAGCGGTAGAACACTATTTTCCAGCTCATTCTCATGTTTTATTGGCGATTCCTTCCTTACCATCATCGGGTCAACCGATAAGGTCCGATCATAATACAGGAGACTATCGTGAGATAAAGCTTGCCTCCCGTGCTTTCGTTCTGCTTCTTTATCTAATCACTCAGTTAAACAGCTCTTTTCCCCGTTAATCTaggctgtgtttgtgtctgcgTATTACGCATTGAGCGTCGAGCTAGTAACAAAACCAGCCAAAGTTATGCAAAGCCGTTTTGTCAGGTCGCAAAGTTATTGGCAAGCCTCAAGTGAACGAACCGTGGTGTACTCACAAATACCAAGTGTCATGACAGCTTCAGCTGACGCAGCGTTCGGCTGGGCGTTAAACGTTAACTCCGGACCTGTGCTAGTACGAAGCCATCGCCTTTAACAGACGTTACGGGCCAAAGGTCTCTTCCCTTACCTAACACATCCTCACGAGCTCCACGAACGCTGTGGGAGAGGACAGACGGCGCTGTCAAGGTCTCGACTGGAATATTAGCATCTTTTTGCCAGGTTAATCTCAAGTTCAGTCTCGAGACTTTTAGGAGAAAGGTCTTTTGCATGGTGAGAACTGCTGCAGGGAGAAAAGCATGGAGAGCAAAGTGACGCAGATCTCCCGAGAAGATCTGGAGGACCTGAGAGAGGCTTTCAACAAAATCGATATCGATAACAGTGGCTATGTGAGCGATTTTGAACTTCAAGAGCTCTTTCGAGAGGCCAGCTTTCACATTCCGGGATACAAGGTACGAGAGATTGTGGAAAAGTTCATGGCAGGTGACACCAACAAAGACGAGAAGATCAGTTTTGAAGAGTTCGTTGCGATATACCAAGAAATGAGAAGCAAAGAGGTGAGAGAAACTTTCCGCAAGTGCATCTCCAGGAGGGATGGGATTCGTTCGTTTGGAGGAACATCAAAGATCTCAAGTGAAGGAACTCAGCATTCTTACTCAGACGAAGAAAAAGTGGCCTTCGTGAACTGGGTCAATAAGGCTTTGGCGGAAGATCCCGACTGCAAGCATCTGATCCCGATGGACCCAGAGACTGACAGCTTATTCAAATCTGTGAAAGACGGAATATTGCTGTGCAAAATGATCAACCTCTCGCAGCCGGACACCATTGATGAGCGGGTCATCAACACGAAGAAATGCACTCCATTTACAATGACGGAGAATTTGGTGCTGGCTCTAAACTCTGCATCGGCTATCGGATGCACGGTGGTCAACATCGATGCTCAGGACATGAAAGCAGGAACCCCTCACCTCGTGCTTGGCCTCCTCTGGCAAATCATAAAAATCGGCCTCTTCGCTGACATTGAAATTTCACGCAACGAAGCTCTAATTGCTTTGCTGGATGAGTCAGAGGAGCTCGACCACCTGATGTCTATGTCCCCCGAGGACCTTTTGCTGCGATGGGTCAACTATCACCTCAAAGCCGCCGGCTGGGAACCAATCAGAAATTTCAGTGATGATATTAAGGACTCCAGGGCATATTTCCACCTGCTTAATCAGATCTCGCCTAAAGGAGACGGGGATGACGAGATGAGGATCGACATTGACATGTCTGGTTTCAATGAGAGTGATGATGAAAGGCGAGCAGAGCTGATGCTGAAGCAGGCAGATCGTCTGGACTGCAGACAGTTTGTCACTCCCAAAGACGTGGTGGCAGGAAACCAGAAGCTCAACATGGCCTTTGTAGCCAATCTTTTCAACATGTACCCGGCCTTGAACAGACCCGCCAGTAATGGCATTGATTATGCAATTGAGGGGGAAACGAGAGAGGACAGGACGTTCAGAAACTGGATGAATTCTCTGGGAGTTACTCCACATGTCAACCACCTGTACAGCGATCTGCACGACGGTCTCATCATTCTTCAGCTGTATGAGAGAACCCAGGTTCATGTTGACTGGACTAGAGTCAATAAACCTCCCTATCCAGTACTGGGATCCAACATGAAGAAGcTTGAGAATTGTAATTATGCGGTCGCACTGGGCAAAAAGGAAGCAAAGTTTTCCTTAGTAGGAATCGGTGGTGAGAATATCAATGAAGGAAGCTCCATGCACACTCTTGCATTGGTCTGGCAGCTAATGAGAAgGTACACACTAAAGGTTCTGTCTGACATCGGTGACGGGGAAAAAGTCAGTGACCAAGTAATTATCGACTGGGTTAACAACACCTTGAAACAAGGCCAGAAAGACTCGCATATTAACAGCTTCAAGGACAAATCAATCAGTACTAGCCTTCCGGTGATTGATCTGATCGACACCATCATGCCCAAAGCCATCAAATACGAGATGGTGAAGACCGGCGATCTGACGGCAGAGGACAAGCTAAACAATGCAAAATATGCGATCTCAGTGGCGCGTAAAATCGGAGTCAGGGTGTACGCCCTGCCCGATGACCTTGTGGAGGTCAACCCCAAGATGGTGATGACGGTGTTTGCATGCCTTATGGGGAGAAGCTTGAAGAAAGTAGATGGCTGACCTTTCTTGAAGGACGCCGTCAGAAAGCACAACCCTCACTTTGCACTTTTTCTTCTCTCGACTTCCCTTCTGCCTCATTCACCAATACTTTCAcgcattagtttttttttttaaacatttctttacgGATACTtcatctttgattaatagacCTCCTGTTAATTACGTTTCACTAATCGTTTCATTTCTCCCAGCTCATGCGCTACAAGTAGATTATTAAAAGTTGACGTTattttcttaaaggaacagtttacccaaaaatgaaagcgtGCGTTGCGTcactgcggtgaatgggtgccgtcagaatgagagtcctgACAGCTAATCCAGgcgaaaagctgcatgtttctaagaaac
>XM_043218085.1
TGAAACGGCTGCTTCTCCATCCGTTCATTCATCcgaaatagtttttaaaagacCTTGTTTTAACTAAGGAGAGCAGAATATGCTTTGCCTCTTTATTATGGACTGTTCAAAGCTCTTTTAGTGCCTGTGAACTGTTGCCTGGATCTCTtaaaaacaggaagtgaggagcTTTGCAAGTGGTCTTTTGCATGGTGAGAACTGCTGCAGGGAGAAAAGCATGGAGAGCAAAGTGACGCAGATCTCCCGAGAAGATCTGGAGGACCTGAGAGAGGCTTTCAACAAAATCGATATCGATAACAGTGGCTATGTGAGCGATTTTGAACTTCAAGAGCTCTTTCGAGAGGCCAGCTTTCACATTCCGGGATACAAGGTACGAGAGATTGTGGAAAAGTTCATGGCAGGTGACACCAACAAAGACGAGAAGATCAGTTTTGAAGAGTTCGTTGCGATATACCAAGAAATGAGAAGCAAAGAGGTGAGAGAAACTTTCCGCAAGTGCATCTCCAGGAGGGATGGGATTCGTTCGTTTGGAGGAACATCAAAGATCTCAAGTGAAGGAACTCAGCATTCTTACTCAGACGAAGAAAAAGTGGCCTTCGTGAACTGGGTCAATAAGGCTTTGGCGGAAGATCCCGACTGCAAGCATCTGATCCCGATGGACCCAGAGACTGACAGCTTATTCAAATCTGTGAAAGACGGAATATTGCTGTGCAAAATGATCAACCTCTCGCAGCCGGACACCATTGATGAGCGGGTCATCAACACGAAGAAATGCACTCCATTTACAATGACGGAGAATTTGGTGCTGGCTCTAAACTCTGCATCGGCTATCGGATGCACGGTGGTCAACATCGATGCTCAGGACATGAAAGCAGGAACCCCTCACCTCGTGCTTGGCCTCCTCTGGCAAATCATAAAAATCGGCCTCTTCGCTGACATTGAAATTTCACGCAACGAAGCTCTAATTGCTTTGCTGGATGAGTCAGAGGAGCTCGACCACCTGATGTCTATGTCCCCCGAGGACCTTTTGCTGCGATGGGTCAACTATCACCTCAAAGCCGCCGGCTGGGAACCAATCAGAAATTTCAGTGATGATATTAAGGACTCCAGGGCATATTTCCACCTGCTTAATCAGATCTCGCCTAAAGGAGACGGGGATGACGAGATGAGGATCGACATTGACATGTCTGGTTTCAATGAGAGTGATGATGAAAGGCGAGCAGAGCTGATGCTGAAGCAGGCAGATCGTCTGGACTGCAGACAGTTTGTCACTCCCAAAGACGTGGTGGCAGGAAACCAGAAGCTCAACATGGCCTTTGTAGCCAATCTTTTCAACATGTACCCGGCCTTGAACAGACCCGCCAGTAATGGCATTGATTATGCAATTGAGGGGGAAACGAGAGAGGACAGGACGTTCAGAAACTGGATGAATTCTCTGGGAGTTACTCCACATGTCAACCACCTGTACAGCGATCTGCACGACGGTCTCATCATTCTTCAGCTGTATGAGAGAACCCAGGTTCATGTTGACTGGACTAGAGTCAATAAACCTCCCTATCCAGTACTGGGATCCAACATGAAGAAGcTTGAGAATTGTAATTATGCGGTCGCACTGGGCAAAAAGGAAGCAAAGTTTTCCTTAGTAGGAATCGGTGGTGAGAATATCAATGAAGGAAGCTCCATGCACACTCTTGCATTGGTCTGGCAGCTAATGAGAAgGTACACACTAAAGGTTCTGTCTGACATCGGTGACGGGGAAAAAGTCAGTGACCAAGTAATTATCGACTGGGTTAACAACACCTTGAAACAAGGCCAGAAAGACTCGCATATTAACAGCTTCAAGGACAAATCAATCAGTACTAGCCTTCCGGTGATTGATCTGATCGACACCATCATGCCCAAAGCCATCAAATACGAGATGGTGAAGACCGGCGATCTGACGGCAGAGGACAAGCTAAACAATGCAAAATATGCGATCTCAGTGGCGCGTAAAATCGGAGTCAGGGTGTACGCCCTGCCCGATGACCTTGTGGAGGTCAACCCCAAGATGGTGATGACGGTGTTTGCATGCCTTATGGGGAGAAGCTTGAAGAAAGTAGATGGCTGACCTTTCTTGAAGGACGCCGTCAGAAAGCACAACCCTCACTTTGCACTTTTTCTTCTCTCGACTTCCCTTCTGCCTCATTCACCAATACTTTCAcgcattagtttttttttttaaacatttctttacgGATACTtcatctttgattaatagacCTCCTGTTAATTACGTTTCACTAATCGTTTCATTTCTCCCAGCTCATGCGCTACAAGTAGATTATTAAAAGTTGACGTTattttcttaaaggaacagtttacccaaaaatgaaagcgtGCGTTGCGTcactgcggtgaatgggtgccgtcagaatgagagtcctgACAGCTAATCCAGgcgaaaagctgcatgtttctaagaaac

Function

symbol description
pls1 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly and actin filament network formation. Predicted to be active in actin filament; actin filament bundle; and cytoplasm. Is expressed in macrophage; otic vesicle; pronephros; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 76. Orthologous to human PLS1 (plastin 1).

NR:

description
PREDICTED: plastin-1-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K17275 PLS1; plastin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218071.1 False 2497 mRNA 0.46 16 1248218 1263078
XM_043218080.1 True 3019 mRNA 0.47 16 1249591 1263078
XM_043218085.1 False 2464 mRNA 0.46 16 1249030 1263078

Neighbor

gene id symbol gene type direction distance location
si:ch211-71m22.1 si:ch211-71m22.1,LOC107722310,LOC107703220,LOC107599861,LOC107558181,LOC107681688 coding upstream 180776 1062189 ~ 1067442 (+)
LOC122357578 LOC107681832,LOC107709017,LOC108437507,LOC103030036,LOC107599862 coding upstream 186944 1052080 ~ 1061274 (+)
LOC122324991 NA coding upstream 208614 1035675 ~ 1039604 (+)
LOC122357034 LOC107599864,LOC107681686,LOC107708940 coding upstream 215229 1027293 ~ 1032989 (+)
si:ch211-71m22.3 NA coding upstream 223455 1019747 ~ 1024763 (+)
ephb3a ephb3a,LOC107681809,LOC107599837,LOC107722542,LOC107708817,LOC107656865,LOC108437521,LOC108267069,LOC105889460,LOC102226142 coding downstream 16759 1279837 ~ 1308819 (+)
kcnmb3 LOC107708981,LOC107599858,LOC107681773 coding downstream 77665 1340743 ~ 1345013 (+)
tbl1xr1b tbl1xr1b,LOC107656866,LOC108437519,LOC107568629,LOC103032574,LOC108267995,LOC107722285,LOC106530177,LOC105889501 coding downstream 93162 1356240 ~ 1371916 (+)
b3gnt5b LOC107593805,LOC107709072,LOC107656860,LOC107681747,LOC107568627,LOC107722519 coding downstream 111980 1375058 ~ 1381470 (+)
dcun1d1 dcun1d1,LOC107681826,LOC107568628,LOC107722250,LOC107708830,LOC105889496 coding downstream 127634 1390712 ~ 1396178 (+)
G8393 dia1a,LOC107599840,LOC107681802,LOC107722302,LOC107565821,LOC107679841 non-coding upstream 45204 1197427 ~ 1203014 (+)
G8394 NA non-coding upstream 62186 1180130 ~ 1186032 (+)
G8222 dnajb4,LOC107681825,LOC107599850,LOC107708915,LOC107566472,LOC107751861,LOC107690981 non-coding upstream 465473 680687 ~ 782745 (+)
G8173 NA non-coding upstream 576655 668304 ~ 671563 (+)
LOC122328698 NA non-coding upstream 603292 643034 ~ 644926 (+)
G8451 NA non-coding downstream 119041 1382119 ~ 1382323 (+)
G8449 NA non-coding downstream 120814 1383892 ~ 1385986 (+)
G8469 LOC107715522,LOC107681815,LOC108437516,LOC108267691 non-coding downstream 144573 1407651 ~ 1425295 (+)
G8508 NA non-coding downstream 335968 1599046 ~ 1673755 (+)
G8519 nos1apb,LOC107715504,LOC107593855,LOC107681742,LOC107560777,LOC107701337 non-coding downstream 369238 1632316 ~ 1636622 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other upstream 419813 799932 ~ 828405 (+)
LOC122360757 fam73b,miga2,miga1,LOC107599369,LOC107705989,LOC107675762,LOC107737175,LOC107661559,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 other upstream 790473 447162 ~ 457745 (+)
LOC122325097 fuz,LOC107708997,LOC107691039 other upstream 1002854 241451 ~ 245364 (+)
G8167 NA other upstream 1024851 200092 ~ 223367 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other downstream 134446 1397524 ~ 1408721 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other downstream 281695 1544773 ~ 1559774 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other downstream 639989 1903067 ~ 1910679 (+)
arl14 arl14,LOC107722413,LOC107719289 other downstream 670434 1933512 ~ 1936759 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other downstream 915688 2178766 ~ 2191448 (+)

Expression


Co-expression Network