chst2a (chst2a,LOC107681814,LOC107599839,LOC107656863,LOC107722292)


Basic Information

Item Value
gene id chst2a
gene name chst2a,LOC107681814,LOC107599839,LOC107656863,LOC107722292
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1245074 ~ 1247262 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218097.1
GCGGTACAATTAGTTATAGCGTACGCCCGGACAACAGAGCAGAGGCTGGGTACCACTCTAACGGGAGATGGCTATTCTTTTGAATCGGTGCTTTTAAAAGGAACTTTCTGATGACGGCTCTCCCTCTCTTTTGAGCGCTAATGATCGCGCGCGCACGTATATCGCCATTTTCCACCAGCGCGAGCCCTGGAAGCAAAATGTTATCGGGATGAATCCCCCTCCGCTTTCCGTCGGTAAGCAAAACGAGATGTGCTCGACTTAGCTTTGCGTACCGCGAAATAACATGACCGGCATCCTTAGTCTGGCATCCGAATGAAAGCCTGCGCATTGCAGTGCGGTTTGTTTTCGTTTCGTCTCTATTTTGGAGTGTCGGGCTTCCCCTCGTCTCCCACGCATCACCTAATCGATAATCGATTGCGTGGACTTGGGGCAGATGTCACGCTTTCTTCTGTGCCATCGTCGCTGCATGTGAGACACTGCAGCTCTATTCGGGACATCACCGGCTCTCTTGTgtcataaatgaaaaacaaaccctACCCTCTAAAATTCACACCACCATGGGAGAAGAATGCTGGCTTTGGAAGGAAACACAAGTCTTGCGCTCGAAACCACACCAAAATAATCGCCAACCCTGGAATTGTGATGAAAGTGCTACGGCGGAAGAAAATAATCATGTTTCTGGCCTACTTTCTGCTGGTGGCCTTGACCATGCTGAACCTGGCTAATTACAAATGGACCAAAGAGCCACAGCAATGCAACCAGCCCATGCAGGGAGTGAACTTCCAAAGCAGATCAGACATCCGCTACCTTTACAAAGCCCCGCAGGTCAAGAAAAGGCAGCTGGTGTACGTCCTGACCACTTGGAGGTCCGGCTCGTCGTTTTTCGGGGAGCTCTTCAACCAAAACCCCGATGTGTTCTTTTTGTACGAGCCCATGTGGCACATTTGGCAGAAGCTGTACCCGGGGGACGCCGTGTCCCTCCAAGGAGCAGCCAGGGACATGCTAAGCTCTCTTTACAGGTGCGACTTCTCTGTTTTTCAGCTCTACAACAGCCCAGGGGGCAAGAACATAACCACTCTCGGACTGTTTGGGGCCGCTATAAACAAGGTCATCTGCTCCTACCCCTTCTGCACGTCCTACAGGAAGGATGTGGTGGGAATGGTGGACGAAAAAGTGTGTAGAAAGTGCCCTCCGCAGAGCCTTCAGATGCTGGAAGAGGAGTGTCTGAAGTACAACACTATCGTGATCAAGGGGGTTCGCATTCTGGACGTCAACGTGCTTGCGCCCCTAATGGAGGACCCGTCTTTGAATCTGAAAGTGATCCATTTGGTGCGAGACCCCAGGGCGGTGGCCAACTCCAGGATCAAATCCCGGCACGGACTCATACGGGAGAATTTGCAGGTCGTGCGCAGCAGAGACCCCAAGCTTCGCCGCGTGCCATTCGTGGACCCCAaccacaaaatgaacaaaaaagacGGCTCGGATTACCACTCCATCGGAGCCATGGAGGTGATCTGCGAGCAAATGTCTAGAACTCTGAAAACCGCTCTTCACCCTCCCACCTGGTTCAAAGGCAAATACATGACGGTGCGCTACGAGGACCTGGTGGAGAACCCCGTTAAAACTGTTCGGAATGTTTACCGCTTCGTTAATCTTTCGGCCAATCACGACATTGAAATCTTTGCTATGAACATGACCACGGGACCCAACGCCTCCACCAAACCGTTCATCGTGTCATCCAGGAACGCCACGCAAGCAGCCAGCGCGTGGAGAACTGTTTTGAACTACCAGCAGATCAGACAGGTGGAGGAGTACTGTCAGCATGCCATGTCTCTGCTGGGATACCTGCGCGTCCGCACGGCCGGGGAGGCTAAGGATTTGAGCAGACCCTTATTGACAGTGCCCAAAATATGAACCGCCGTCGCCGCCAAAGACGTttgatgttttgcatttgtgctGAGGACAGCCTGATACTCGTTCTGTACAAACTGTTATTTATGTTCGATGCTTAATGGCTCAGTGGAATGTATCTGTTTGCATCATACTGTGCACAGCCACTTATTGTATGTCGGGACCAGAATATCGTCTGTGCATCACCACATGTTTGACcaaataacagaaaaagaaatactttGTGTACGATGTGTCTTTGATCATTAAAGCTACGccaagatatttatttaatcaaa

Function

symbol description
chst2a Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process and sulfur compound metabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Orthologous to human CHST2 (carbohydrate sulfotransferase 2).

NR:

description
PREDICTED: carbohydrate sulfotransferase 2-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K04745 CHST2; carbohydrate 6-sulfotransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218097.1 True 2189 mRNA 0.51 1 1245074 1247262

Neighbor

gene id symbol gene type direction distance location
fubp1 fubp1,LOC107681766,LOC107703234 coding downstream 229688 1006589 ~ 1015386 (-)
usp33 usp33,LOC107708728,LOC107751869,LOC107681685 coding downstream 249326 974125 ~ 995748 (-)
zzz3 zzz3,LOC107681788,LOC107599843,LOC107703198,LOC107708932,LOC107703238 coding downstream 271731 953716 ~ 973343 (-)
pigk LOC106594017,LOC104946057 coding downstream 369847 843215 ~ 875227 (-)
dnajb4 dnajb4,LOC107681825,LOC107599850,LOC107751861,LOC107690981,LOC107566472,LOC108430719 coding downstream 560061 680675 ~ 685013 (-)
pcolce2a pcolce2a,LOC107681764,LOC107599838,LOC107709043,LOC107565816 coding upstream 17382 1264644 ~ 1273155 (-)
kcnmb2 kcnmb2,LOC107656859,LOC107568625 coding upstream 97880 1345142 ~ 1347767 (-)
eif4a2 eif4a2,LOC107568626,LOC107593804,LOC108267852,LOC105889495 coding upstream 135315 1382577 ~ 1388864 (-)
LOC122328985 NA coding upstream 136446 1383708 ~ 1383784 (-)
LOC122328960 NA coding upstream 136828 1384090 ~ 1384275 (-)
G8386 NA non-coding downstream 198167 1046590 ~ 1046907 (-)
G8385 NA non-coding downstream 202124 1042745 ~ 1042950 (-)
G8375 NA non-coding downstream 245385 998369 ~ 999689 (-)
G8309 NA non-coding downstream 468116 774259 ~ 776958 (-)
G8296 NA non-coding downstream 550704 693580 ~ 694370 (-)
G8415 NA non-coding upstream 914 1248176 ~ 1248590 (-)
G8439 LOC107722542 non-coding upstream 62683 1309945 ~ 1310291 (-)
G8443 NA non-coding upstream 85583 1332845 ~ 1333104 (-)
G8479 NA non-coding upstream 152146 1399408 ~ 1399728 (-)
G8489 LOC107696015,LOC107710542,LOC107721879 non-coding upstream 214798 1462060 ~ 1462514 (-)
dipk2aa dia1a,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108437525,LOC108268022 other downstream 42087 1179945 ~ 1202987 (-)
LOC122325167 NA other downstream 641130 119350 ~ 603944 (-)
mfsd8l2 si:ch211-38m6.6,LOC107681768,LOC107656858,LOC107565819,LOC107722537,LOC107599859,LOC108437504,LOC105026921 other upstream 84168 1331430 ~ 1337998 (-)
colgalt2a LOC107593860,LOC107681694,LOC107715500 other upstream 278486 1525748 ~ 1532557 (-)
gng5 NA other upstream 675033 1922295 ~ 1940721 (-)
slc1a7a slc1a7a,slc1a7,LOC107722044,LOC107671767,LOC107681716,LOC107593788 other upstream 769146 2016408 ~ 2038705 (-)
tmem125b tmem125b,LOC107719275,LOC107681700,LOC107681734,LOC107719290,LOC107593887 other upstream 803168 2050430 ~ 2055709 (-)

Expression


Co-expression Network