gjc2 (LOC107661908,LOC107727543,LOC107711690,LOC107671673,LOC107558016,LOC107593878)


Basic Information

Item Value
gene id gjc2
gene name LOC107661908,LOC107727543,LOC107711690,LOC107671673,LOC107558016,LOC107593878
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3313001 ~ 3333005 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218239.1
AAAATAAGACATCGAGTCTGTCCTCTTTTACAAGTTCttatatattaaacagattGGGACTAGTTGTCACATGAACAAGAGCTACATCTTAACTGTAATAGAGTTAATGTTTAGAGTTATACACGTGTATATTGATTTCCAAtacttaaaatgcatgcaagaCATTTTCCCCAATTCTTTTCATCTAAAATTCCAGAAATAAAGAATCTGATGTGCTTTTTGGCCGTTGAACatgaacagatttattttttttaatgcaatgtcCAAGTCTGCTAGGATTGGAATGTGCGCAAATCTCCTCAAAAATTGATAAAATACCTCAGCAAATGAAAATACATCTAAATGATCAGTCAAACCTGTTGTCACAACCTAATTTCTTGCTAAACATGTTTGACGTACTTCAAATGCAATGTTATTGGagttcaaatagttttttttaccaCAATAAGTTCTatatcataatatttaaaatgtaaataattaaaacagttaaaaatgatATGCCAGAATATGTTTGTAATGACATGCGGGTGATTAATTgagattattttcatatttgggtggAGTGTCAAACTCTGCTAGATATCTAATGgtgtttaaattaaactatttttgtgAATTGCCCCACAAActaaaaactgatttatttccagaaaaaatacaatgataaagtgatttttaaaagtgtctTTACAATAACTGGCTTAATTTACCAATCCAGAGAAATAGTATGGAGCTtctaatttcttttctttctgtcttctgcTACAAATTTTATAAAGATTAGtagaatgacaaaataatttcAAAGTACTCAACTGCAGGTGAGGTATGTCTCGCAGTGGTTTTCACgtgttgtgtttatatttttttctgccttttaTGGGATTGGAAGGTCTGGAGCTTCCGTCAAACAGGAAGGAGACAGCTCAGTTTATATAGGCAGGAAGTTCACTGGTAATGAAAAATCAGCAGTAACGCCCAGTACTTCCTTTGTTAGAAACTGGTGATCCAGCATACTCTTTTTGGTGAAAGGCCAATGTAAGATGGGCTCTATTTTTCCCTAATCTTAACTCTGGACTCTTAGTGAACGGAAATAGAAATAGCACCCATCTAACAAAGACTTTCTAGACCACACCAATTGTAAAACGTCTCACTACGCCATCCCGGAAAGTGTGTTACCAAACAGTGGCAAAGAGATTCAGTCATAAGtactaaataataaactttattgACACTCGCAACAACGAGTTTAGAACAGAGCTGTAGTAGTATTCCTCCTTTATTGCTTTGAATAAGCTTTTAgtaatgaaatacattaaatttttttttttggaaagcagCATTCCACTGTCACTGGTGGAAAACCTTTTTCCATTTTGGTATCCTAGAGGTGCATATTATTacctaaagtgtacatattagaATCGAAAgtttaccttttgaaaaggtaccgccacagtgacagcttttgtacctttatttctgagagcgcATCACTGCAAACAAGAATAGAGTTGTGCAATTTACAATAATCAGTTCTCCATTTTAGgacttttacaaaaaatgcattgaaagaGCTGACGAATGTAACCGAGATGAGAGCTCTCTGACTGAATCACGCCGGAAAGCACAATAAAAGAGACATACAAACAGAAGGGAGAACAATGGCTCTTTTGGCCTGTGGTGTTGCTCCTGAGTGTCACTGCCTGTACTTGGTGGTGAATGGTTTTGAGGGAAAATGATCCATTGTGTGCGTCTCTTTACTTCTCACTGGTGTGATAGTGTCAATGGTTGCGGGTTCATGGTCAATTCCTGCTAATTCTACAAAGACTTGGTGAAGAGGTCTGCCATCGCTATGGAGAGAACATAAGTGAAGGGTCTCTGTCACCAACATGAGCTGGAGCTTTCTCACTCGACTATTGGAGGAAATCCACAACCACTCCACGTTTGTGGGGAAAGTTTGGCTGACTGTGCTAATTATTTTCCGCATCGTTCTGACCGCAGTGGGAGGTGAGTCAATCTACTCCGATGAGCAGACTAAGTTCACCTGCAACACTAAGCAGCCCGGCTGCGACAACGTATGCTACGACTCCTTCGCCCCGCTGTCACACGTCCGGTTCTGGGTGTTCCAGATCATCATGATATCCACCCCCTCCGTCATGTATCTGGGTTACGCCATCCATAAGATCGCCCGTACCTCGGAGGAGGAGCGGTGCAAGAACCAGATTTACCACAAGAGGAACCGCCACAGTCGGTGGAGAAACGGACACCACCTAGAAGAGGTCTTGGAGGAAGATGATGCCGAGCCCATGATCTACGAAGAAGACACTTTGGATGAGCAGGAGGTCAAACCAGAGACAGACAAGGGAAAAAACCAAGACCCATTGAAGCATGATGGCCGCCGTAAGATCATGCAAGAAGGCTTGATGAGGATGTATGTGCTTCAGCTTTTATCCCGTGCGGTCTTTGAGGTCGGGTTCCTCACGGGTCAATATCTCCTTTATGGCTTCCGGGTTAATCCTTCGTACGTCTGCAACAAGATCCCATGCCCGCACAGAGTAGACTGCTTCGTCTCACGGCCCACCGAGAAGACCATCTTTTTACTCATCATGTACGTGGTGAGCTGTCTTTGTCTGCTGCTCAATGTTTGTGAGATGTTCCACTTGGGGATCGGTGCCTTCCGTGACACTCTTCGCAAACGTCGAAGCCACGGCCAGCAACCTCCATACGGCTACCCTTACTCCAGGAACATTTCCAGCTCTCCTCCAGGGTACAACCTGGTGGTTAAATCTGACAAACCGGGTCGCATTCCCAACAGCATCATCCTGCAGGACCAGAACATGCCCAGAGTGCTGCCTGAGCAGCACTGCACAAGCCCTGATGAGAATATTCCCTCTGACCTGGCTACGCTGCACCACCATTTACGAGTAGCTCAGGAACAACTTGACATGGCGTTTCAGACATATAACACAAAAAACTCTCAGATCTCCAGAGCTAGCAGCCCTGTTTCTGGTGGCACAATGACAGAGCAGAACCGGGTCAACACAGCTCAGGAGAAACAGGGCGCACGACCTAAAGCTAGCACTGAGAGGGCCGGGACTATAGCAAAAAATGGAAAGACTTCTGTGTGGATTTAACTCTTATCTGACTATTCATGAGCCGATATTTAGTTAGTGAGGGCATGACTGAACATTATGTACCCGAATTCTGTTGaacattaaacaaaactgaaaaataaa
>XM_043218248.1
GTCGCGGCAGTCGTGCAGGAACACGCCATCGGTCAGTCTAGGAGTTTAAACCCTCGATTCGGGGCCATTAGCCCGAGGAACTCTTTCTCTCGcggtttttttctttctctttatactTCCTCTCTTGCGTGCGCAAAACAAGAGTCAGAGATGAGAGCGAGGCGTCAATGAGACCGACGGTGTACGATGGGCGCGCGGGACGCGGAGCGATCTCTGCGGCTGTTAGATGCTGATGGATCGCGATTCTTTCGACCGTGGACCCGCTTTACCGAGCGCACCTGAGACGGAAAGCTGAGGGTCGCCGCAGTTTGGCGGAAAGTTATGACCGGATGGAGCGCGCGTCTTCTGGAGGGGTCTCCTCGGCGCAACTTCCCAAGAACATAAGTGAAGGGTCTCTGTCACCAACATGAGCTGGAGCTTTCTCACTCGACTATTGGAGGAAATCCACAACCACTCCACGTTTGTGGGGAAAGTTTGGCTGACTGTGCTAATTATTTTCCGCATCGTTCTGACCGCAGTGGGAGGTGAGTCAATCTACTCCGATGAGCAGACTAAGTTCACCTGCAACACTAAGCAGCCCGGCTGCGACAACGTATGCTACGACTCCTTCGCCCCGCTGTCACACGTCCGGTTCTGGGTGTTCCAGATCATCATGATATCCACCCCCTCCGTCATGTATCTGGGTTACGCCATCCATAAGATCGCCCGTACCTCGGAGGAGGAGCGGTGCAAGAACCAGATTTACCACAAGAGGAACCGCCACAGTCGGTGGAGAAACGGACACCACCTAGAAGAGGTCTTGGAGGAAGATGATGCCGAGCCCATGATCTACGAAGAAGACACTTTGGATGAGCAGGAGGTCAAACCAGAGACAGACAAGGGAAAAAACCAAGACCCATTGAAGCATGATGGCCGCCGTAAGATCATGCAAGAAGGCTTGATGAGGATGTATGTGCTTCAGCTTTTATCCCGTGCGGTCTTTGAGGTCGGGTTCCTCACGGGTCAATATCTCCTTTATGGCTTCCGGGTTAATCCTTCGTACGTCTGCAACAAGATCCCATGCCCGCACAGAGTAGACTGCTTCGTCTCACGGCCCACCGAGAAGACCATCTTTTTACTCATCATGTACGTGGTGAGCTGTCTTTGTCTGCTGCTCAATGTTTGTGAGATGTTCCACTTGGGGATCGGTGCCTTCCGTGACACTCTTCGCAAACGTCGAAGCCACGGCCAGCAACCTCCATACGGCTACCCTTACTCCAGGAACATTTCCAGCTCTCCTCCAGGGTACAACCTGGTGGTTAAATCTGACAAACCGGGTCGCATTCCCAACAGCATCATCCTGCAGGACCAGAACATGCCCAGAGTGCTGCCTGAGCAGCACTGCACAAGCCCTGATGAGAATATTCCCTCTGACCTGGCTACGCTGCACCACCATTTACGAGTAGCTCAGGAACAACTTGACATGGCGTTTCAGACATATAACACAAAAAACTCTCAGATCTCCAGAGCTAGCAGCCCTGTTTCTGGTGGCACAATGACAGAGCAGAACCGGGTCAACACAGCTCAGGAGAAACAGGGCGCACGACCTAAAGCTAGCACTGAGAGGGCCGGGACTATAGCAAAAAATGGAAAGACTTCTGTGTGGATTTAACTCTTATCTGACTATTCATGAGCCGATATTTAGTTAGTGAGGGCATGACTGAACATTATGTACCCGAATTCTGTTGaacattaaacaaaactgaaaaataaa

Function

NR:

description
gap junction gamma-1 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07616 GJC1, GJA7, CX45; gap junction gamma-1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218239.1 True 3242 mRNA 0.42 2 3313001 3333005
XM_043218248.1 False 1753 mRNA 0.52 2 3326191 3333005

Neighbor

gene id symbol gene type direction distance location
LOC122324044 cyp8b1,cyp8b3,LOC107727542,LOC107661909,LOC107558014,LOC107593879,LOC107711691,LOC107671665 coding upstream 150 3310936 ~ 3312851 (+)
LOC122355375 LOC107727511,LOC107593880,LOC107711692,LOC107671684,LOC107661913 coding upstream 4703 3306262 ~ 3308298 (+)
abhd3 abhd3,LOC107727531,LOC107671728,LOC107711708,LOC107661904 coding upstream 59877 3235234 ~ 3253124 (+)
LOC122362414 LOC107727480 coding upstream 99335 3209152 ~ 3213666 (+)
LOC122355741 LOC107661905,LOC107711709,LOC107671722,LOC107727480,LOC107558019 coding upstream 115554 3194012 ~ 3197447 (+)
iba57 iba57,LOC107727502,LOC107593877 coding downstream 3394 3336399 ~ 3339974 (+)
snap47 snap47,LOC107661893,LOC107727535,LOC107671760,LOC107711707,LOC107558015 coding downstream 10653 3343658 ~ 3351584 (+)
wnt3a wnt3a,LOC107727506,LOC107558010,LOC107661901 coding downstream 127722 3460727 ~ 3481179 (+)
arf1 arf1,LOC103038497,LOC107671731,LOC107727518 coding downstream 166575 3499580 ~ 3504255 (+)
guk1a LOC107727516,LOC107711703,LOC107593754,LOC107661890,LOC107574785 coding downstream 179884 3512889 ~ 3522776 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding upstream 191948 3116848 ~ 3121053 (+)
G8816 NA non-coding upstream 400214 2912291 ~ 2912787 (+)
G8794 NA non-coding upstream 440252 2819072 ~ 2872749 (+)
G8764 NA non-coding upstream 699897 2612522 ~ 2613104 (+)
G8724 NA non-coding upstream 703482 2511622 ~ 2609519 (+)
G9130 ipp non-coding downstream 190265 3523270 ~ 3524571 (+)
G9141 NA non-coding downstream 230703 3563708 ~ 3564239 (+)
G9142 LOC107579015,LOC107671680,LOC107711685 non-coding downstream 239432 3572437 ~ 3573075 (+)
G9232 NA non-coding downstream 447535 3780540 ~ 3780778 (+)
G9234 NA non-coding downstream 451334 3784339 ~ 3784667 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 148178 3123124 ~ 3164823 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other upstream 573094 2729636 ~ 2739907 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other upstream 623374 2675370 ~ 2689627 (+)
G8768 zbtb41,LOC107671738,LOC107559347,LOC107709336,LOC107681803 other upstream 676415 2635241 ~ 2636586 (+)
LOC122329004 NA other upstream 694552 2618316 ~ 2618449 (+)
G9154 rock1,LOC107671690 other downstream 282477 3615482 ~ 3617043 (+)
G9173 NA other downstream 343420 3676425 ~ 3678934 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other downstream 423166 3756171 ~ 3790339 (+)
G9361 NA other downstream 889234 4222239 ~ 4223112 (+)
G9416 wrnip1 other downstream 1230892 4563897 ~ 4570094 (+)

Expression


Co-expression Network